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IVF0014609 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0014609
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionPSII 6.1 kDa protein
Genome locationchr01:26645796..26647488
RNA-Seq ExpressionIVF0014609
SyntenyIVF0014609
Gene Ontology termsGO:0042549 - photosystem II stabilization (biological process)
GO:0009523 - photosystem II (cellular component)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR009806 - Photosystem II PsbW, class 2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0059706.1 photosystem II reaction center W protein [Cucumis melo var. makuwa]1.09e-86100Show/hide
Query:  MAAVTSAAAAAVRTSLVQNRPALPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLEMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG
        MAAVTSAAAAAVRTSLVQNRPALPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLEMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG
Subjt:  MAAVTSAAAAAVRTSLVQNRPALPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLEMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG

Query:  LSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL
        LSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL
Subjt:  LSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL

XP_004146953.1 photosystem II reaction center W protein, chloroplastic isoform X2 [Cucumis sativus]1.33e-8096.38Show/hide
Query:  MAAVTSAAAAAVRTSLVQNRPALPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLEMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG
        MAAVTSAAAA VRTSLVQNR  LPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNL MGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG
Subjt:  MAAVTSAAAAAVRTSLVQNRPALPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLEMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG

Query:  LSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL
        LSNNLLGWILLGVF LIWAFYIVYTSTLEEDEESGLSL
Subjt:  LSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL

XP_008451280.1 PREDICTED: photosystem II reaction center W protein, chloroplastic-like [Cucumis melo]1.28e-8599.28Show/hide
Query:  MAAVTSAAAAAVRTSLVQNRPALPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLEMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG
        MAAVTSAAAAAVRTSLVQNRPALPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNL MGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG
Subjt:  MAAVTSAAAAAVRTSLVQNRPALPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLEMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG

Query:  LSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL
        LSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL
Subjt:  LSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL

XP_031745255.1 photosystem II reaction center W protein, chloroplastic isoform X1 [Cucumis sativus]1.37e-7791.1Show/hide
Query:  MAAVTSAAAAAVRTSLVQNRPALPSASPAPFLL--------GLPALGKKGGVRCSMEGKGNGEVENKSSNLEMGASLIAAACAATMSSPAMALVDERLST
        MAAVTSAAAA VRTSLVQNR  LPSASPAPFLL        GLPALGKKGGVRCSMEGKGNGEVENKSSNL MGASLIAAACAATMSSPAMALVDERLST
Subjt:  MAAVTSAAAAAVRTSLVQNRPALPSASPAPFLL--------GLPALGKKGGVRCSMEGKGNGEVENKSSNLEMGASLIAAACAATMSSPAMALVDERLST

Query:  EGTGLPFGLSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL
        EGTGLPFGLSNNLLGWILLGVF LIWAFYIVYTSTLEEDEESGLSL
Subjt:  EGTGLPFGLSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL

XP_038900227.1 photosystem II reaction center W protein, chloroplastic-like [Benincasa hispida]1.89e-8094.93Show/hide
Query:  MAAVTSAAAAAVRTSLVQNRPALPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLEMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG
        MAAVTSAA A  RTSLVQNRP LP+ASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNL MGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG
Subjt:  MAAVTSAAAAAVRTSLVQNRPALPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLEMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG

Query:  LSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL
        LSNNLLGWIL GVFGLIWAFYIVYTSTLEEDEESGLSL
Subjt:  LSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL

TrEMBL top hitse value%identityAlignment
A0A0A0K4V6 PSII 6.1 kDa protein7.1e-6196.38Show/hide
Query:  MAAVTSAAAAAVRTSLVQNRPALPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLEMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG
        MAAVTSAAAA VRTSLVQNR  LPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNL MGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG
Subjt:  MAAVTSAAAAAVRTSLVQNRPALPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLEMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG

Query:  LSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL
        LSNNLLGWILLGVF LIWAFYIVYTSTLEEDEESGLSL
Subjt:  LSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL

A0A1S3BQI5 PSII 6.1 kDa protein1.1e-6499.28Show/hide
Query:  MAAVTSAAAAAVRTSLVQNRPALPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLEMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG
        MAAVTSAAAAAVRTSLVQNRPALPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNL MGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG
Subjt:  MAAVTSAAAAAVRTSLVQNRPALPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLEMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG

Query:  LSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL
        LSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL
Subjt:  LSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL

A0A5D3DRC0 PSII 6.1 kDa protein1.6e-65100Show/hide
Query:  MAAVTSAAAAAVRTSLVQNRPALPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLEMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG
        MAAVTSAAAAAVRTSLVQNRPALPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLEMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG
Subjt:  MAAVTSAAAAAVRTSLVQNRPALPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLEMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG

Query:  LSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL
        LSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL
Subjt:  LSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL

A0A6J1GQI7 PSII 6.1 kDa protein3.7e-5789.86Show/hide
Query:  MAAVTSAAAAAVRTSLVQNRPALPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLEMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG
        MAAVTSAAAA VR+SLVQNRP LP+ASP+PFLLGLPALGKKGGVRCSMEGK NG+VENKSS L MGASL+AAA AA+MSSPAMALVDERLSTEGTGLPFG
Subjt:  MAAVTSAAAAAVRTSLVQNRPALPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLEMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG

Query:  LSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL
        LSNNLLGWILLGVFG IWAFYI+YTSTLEEDEESGLSL
Subjt:  LSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL

A0A6J1H5C6 PSII 6.1 kDa protein6.9e-5688.41Show/hide
Query:  MAAVTSAAAAAVRTSLVQNRPALPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLEMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG
        MAAV SA+AAAVR+SLVQNRP LP+ASP  FLLGLPALGK+GGVRC ++GK NGEVENKS NL MGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG
Subjt:  MAAVTSAAAAAVRTSLVQNRPALPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLEMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG

Query:  LSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL
        LSNNLLGWILLGVFG IW FYIVYTSTLEEDEESGLSL
Subjt:  LSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL

SwissProt top hitse value%identityAlignment
Q39194 Photosystem II reaction center W protein, chloroplastic1.5e-3162.07Show/hide
Query:  MAAVTSAAA--AAVRTSLVQNRPALPSASPAPFLLGLPALG-KKGGVRCSMEGK-GNGEVENKSSNLEMGASLIAAACA---ATMSSPAMALVDERLSTE
        MA+ T++A+  +A R +L+  +P +  ++P   +LGLP +G KKGGVRCSME K GN  V        MGA + AAA A   A MS+PAMALVDER+STE
Subjt:  MAAVTSAAA--AAVRTSLVQNRPALPSASPAPFLLGLPALG-KKGGVRCSMEGK-GNGEVENKSSNLEMGASLIAAACA---ATMSSPAMALVDERLSTE

Query:  GTGLPFGLSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL
        GTGLPFGLSNNLLGWIL GVFGLIW F+ VYTS+LEEDEESGLSL
Subjt:  GTGLPFGLSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL

Q41387 Photosystem II reaction center W protein, chloroplastic5.8e-3662.14Show/hide
Query:  MAAVTSAAAAAV--RTSLVQNRPALPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLEMGASLIAAACAATMSSPAMALVDERLSTEGTGLP
        MA +T++++A++  R SLV N     S+SP   +LGLP++ K+  V CS+E K +      ++N  MGASL+AAA AAT+S+PAMALVDER+STEGTGLP
Subjt:  MAAVTSAAAAAV--RTSLVQNRPALPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLEMGASLIAAACAATMSSPAMALVDERLSTEGTGLP

Query:  FGLSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL
        FGLSNNLLGWIL GVFGLIWA Y VY S LEEDEESGLSL
Subjt:  FGLSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL

Q5ZBY9 Photosystem II reaction center W protein, chloroplastic4.1e-2151.45Show/hide
Query:  MAAVTSAAAAAVRTSLVQNRPALPSASPAPFLLGLPALGKKGG--VRCSMEGKGNGEVENKSSNLE-MGASLIAAACAATMSSPAMALVDERLSTEGTGL
        MA V++AAA +V    V   P           LGLP +  +    VRC+     + E    ++ ++  GASL+A A  A   +PAMALVDER+STEGTGL
Subjt:  MAAVTSAAAAAVRTSLVQNRPALPSASPAPFLLGLPALGKKGG--VRCSMEGKGNGEVENKSSNLE-MGASLIAAACAATMSSPAMALVDERLSTEGTGL

Query:  PFGLSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESG
          GLSNNLLGWILLGVFGLIW+ Y +YTS LEEDEESG
Subjt:  PFGLSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESG

Q9SPI9 Photosystem II reaction center W protein, chloroplastic4.2e-1041.25Show/hide
Query:  SNLEMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGLIWAFYIVYTSTLE--EDEESGLSL
        S +    ++++   A   + PA ALVDER++ +GTG PFG+++ +LGW+LLGVFG +WA + +    L   ED + GL L
Subjt:  SNLEMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGLIWAFYIVYTSTLE--EDEESGLSL

Arabidopsis top hitse value%identityAlignment
AT2G30570.1 photosystem II reaction center W1.1e-3262.07Show/hide
Query:  MAAVTSAAA--AAVRTSLVQNRPALPSASPAPFLLGLPALG-KKGGVRCSMEGK-GNGEVENKSSNLEMGASLIAAACA---ATMSSPAMALVDERLSTE
        MA+ T++A+  +A R +L+  +P +  ++P   +LGLP +G KKGGVRCSME K GN  V        MGA + AAA A   A MS+PAMALVDER+STE
Subjt:  MAAVTSAAA--AAVRTSLVQNRPALPSASPAPFLLGLPALG-KKGGVRCSMEGK-GNGEVENKSSNLEMGASLIAAACA---ATMSSPAMALVDERLSTE

Query:  GTGLPFGLSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL
        GTGLPFGLSNNLLGWIL GVFGLIW F+ VYTS+LEEDEESGLSL
Subjt:  GTGLPFGLSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGCCGTCACCTCCGCCGCCGCTGCCGCCGTCCGCACTTCTCTGGTCCAGAACCGCCCCGCTCTGCCGTCGGCTTCACCCGCCCCATTCCTTCTTGGGTTACCTGC
CTTGGGAAAGAAAGGAGGAGTGAGGTGTTCAATGGAAGGAAAAGGAAATGGAGAAGTAGAAAACAAATCAAGCAACTTGGAGATGGGGGCGTCGTTGATAGCTGCGGCGT
GTGCTGCAACGATGTCGAGCCCGGCCATGGCTTTGGTGGATGAGAGACTGAGCACTGAAGGGACTGGCCTTCCATTTGGTTTGAGCAACAATCTTCTTGGTTGGATTCTG
TTGGGAGTTTTTGGTCTCATTTGGGCATTTTACATTGTTTACACTTCTACTCTTGAAGAGGATGAAGAATCTGGCTTATCTCTTTAA
mRNA sequenceShow/hide mRNA sequence
CATCTTTGTAAGATATGAAGAAAGAATGAGAGTGAAGTATAAAGCAAAATCTGAAAATGGGACATTTGGGAAGTCCACGTAGGAGTAAACTATTGGATCCCAAAGGATGA
TAGAACACGTGTAAAAAGGTAATTGGCGGAAAGTAGATAAAGGATATGAAGGAAATGGTATGGTTGGCCACTCTCTCTCTATCTACCCTTTGTGTGGTGCCACTCAAAAC
CCAACAAATAATATTAATTCTTTCCAAACCCTCCCTTTGATCTCCACTCTCCAAATTCCCAATTCCTTGTTCCTTTTTTCCTTTCAAAATTTGAAGACCAAACAAATCTA
ATGGCCGCCGTCACCTCCGCCGCCGCTGCCGCCGTCCGCACTTCTCTGGTCCAGAACCGCCCCGCTCTGCCGTCGGCTTCACCCGCCCCATTCCTTCTTGGGTTACCTGC
CTTGGGAAAGAAAGGAGGAGTGAGGTGTTCAATGGAAGGAAAAGGAAATGGAGAAGTAGAAAACAAATCAAGCAACTTGGAGATGGGGGCGTCGTTGATAGCTGCGGCGT
GTGCTGCAACGATGTCGAGCCCGGCCATGGCTTTGGTGGATGAGAGACTGAGCACTGAAGGGACTGGCCTTCCATTTGGTTTGAGCAACAATCTTCTTGGTTGGATTCTG
TTGGGAGTTTTTGGTCTCATTTGGGCATTTTACATTGTTTACACTTCTACTCTTGAAGAGGATGAAGAATCTGGCTTATCTCTTTAAGCCAACATTTCCCCATCTTACTT
ACTATTATTAATTATTGCTACTTTTGTTATTGTTGTGGATATTTTGCCTTTGGCTTGAATTGTGTAGAAGCTTTTGAATTCATATCATTCAAGCCCTTTTGTTCGGGTAT
CAATGTAGAAAAAAGTAAATGTGGTTCATAACTCTTCATTTTATTTCTCTGAATTTTTTTTAATATCGTCAAAGGAATTTATATGTTGTTTGATATCTGTTAAGTTTTTA
AATCTAAGTTTATAAAACCCTTTTTTCGTCACTAAA
Protein sequenceShow/hide protein sequence
MAAVTSAAAAAVRTSLVQNRPALPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLEMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWIL
LGVFGLIWAFYIVYTSTLEEDEESGLSL