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IVF0014649 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0014649
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr02:6871942..6873151
RNA-Seq ExpressionIVF0014649
SyntenyIVF0014649
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0055987.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.63e-8762.65Show/hide
Query:  MDTFLQIGNACRGSFEVDKATMNMENLLEAKIKVRYNYCGFIPATIRIKDKNGHSFVVHSVTICSGKWLAERDVKIHGSFKRQTTIEFDNFNPKFKIPKN
        MDTFLQIGNACRGSFEVDKATMNMENLLEAKIKVRYNYCGFIPATIRIKDKNGHSFVVHSVTICSGKWLAERDVKIH                       
Subjt:  MDTFLQIGNACRGSFEVDKATMNMENLLEAKIKVRYNYCGFIPATIRIKDKNGHSFVVHSVTICSGKWLAERDVKIHGSFKRQTTIEFDNFNPKFKIPKN

Query:  KSSMAELTMEGNPTHSSRKINSSKEPKLRKKPGKKKGIQAKASYSCIPSLIVKPTQSNLHDDQHKRGDLTTDLSYPDIIKETQDTDPQKDEAQIANTNGP
                                                                         + D     S PDIIKETQDTDPQKDEAQIANTNGP
Subjt:  KSSMAELTMEGNPTHSSRKINSSKEPKLRKKPGKKKGIQAKASYSCIPSLIVKPTQSNLHDDQHKRGDLTTDLSYPDIIKETQDTDPQKDEAQIANTNGP

Query:  QEKVLPIASSEDDMMNKEEEDDFKVKLIQWLKDNNLKLATTMIYFPQQMAAKTASDQ
        QEKVLPIASSEDDMMNKEEEDDFKVKLIQWLKDNNLKLATTMIYFPQQMAAKTASDQ
Subjt:  QEKVLPIASSEDDMMNKEEEDDFKVKLIQWLKDNNLKLATTMIYFPQQMAAKTASDQ

KAA0058459.1 hypothetical protein E6C27_scaffold132G00460 [Cucumis melo var. makuwa]2.03e-6945.16Show/hide
Query:  ICSGKWLAERDVKIHGSFKRQTTIEFDNFNPK----------------FKIPKNKSSMAELTMEGNPTH-------------------------------
        + SGKWLAERDV+IH SFKRQ  IEFDNFNPK                F+IPKNKS M +LT+EGNPT+                               
Subjt:  ICSGKWLAERDVKIHGSFKRQTTIEFDNFNPK----------------FKIPKNKSSMAELTMEGNPTH-------------------------------

Query:  --------------------------------------------------------------SSRKINSSKEPKLRKKPGKKKGIQAKASYSCIPSLIVK
                                                                      SSRKINS  E K RKKPGK K  + K   S IPSLIVK
Subjt:  --------------------------------------------------------------SSRKINSSKEPKLRKKPGKKKGIQAKASYSCIPSLIVK

Query:  PTQSNLHDDQHKRGDLTTDLSY-------------------PDIIKETQDTDPQKDEAQIANTNGPQEKVLPIASSEDDMMNKEEEDDFKVKLIQWLKDN
        PTQS L  DQ+K GDLT ++ +                   PD + ETQD DP+KDEAQIANT G QE  L IAS E DM NKE ED FKVKLIQWL+DN
Subjt:  PTQSNLHDDQHKRGDLTTDLSY-------------------PDIIKETQDTDPQKDEAQIANTNGPQEKVLPIASSEDDMMNKEEEDDFKVKLIQWLKDN

Query:  NLKLATTMIYFPQQMAAKTASDQVGIGDERVKENGGNNFFK
        NLKLATT+I  PQQMAA+TASDQVGIGDER ++NG NNFFK
Subjt:  NLKLATTMIYFPQQMAAKTASDQVGIGDERVKENGGNNFFK

TYK01568.1 hypothetical protein E5676_scaffold451G001460 [Cucumis melo var. makuwa]3.16e-11756.83Show/hide
Query:  MDTFLQIGNACRGSFEVDKATMNMENLLEAKIKVRYNYCGFIPATIRIKDKNGHSFVVHSVTICSGKWLAERDVKIHGSFKRQTTIEFDNFNPK------
        MDTFLQ GNAC    EVDKA MN+ENLLEAKI VRYNYC FIPATI+IKDKNGHSF+VH VTICSGKWLAERDVKI+ SFKRQ  IEFDNFN +      
Subjt:  MDTFLQIGNACRGSFEVDKATMNMENLLEAKIKVRYNYCGFIPATIRIKDKNGHSFVVHSVTICSGKWLAERDVKIHGSFKRQTTIEFDNFNPK------

Query:  ----------FKIPKNKSSMAELTMEGNPTH--------------------------------------------------------SSRKINSSKEPKL
                  F+IPKNKS MAELT+EGNPTH                                                        SSRK NS+ EPK 
Subjt:  ----------FKIPKNKSSMAELTMEGNPTH--------------------------------------------------------SSRKINSSKEPKL

Query:  RKKPGKKKGIQAKASYSCIPSLIVKPTQSNLHDDQHKRGDLTTDLSY-------------------PDIIKETQDTDPQKDEAQIANTNGPQEKVLPIAS
        RKKPGKK+    K +   IPSLIVKPTQSN  DDQHK GDLT DL +                   PDI+K TQDTD QK +AQIAN   PQE VLP  S
Subjt:  RKKPGKKKGIQAKASYSCIPSLIVKPTQSNLHDDQHKRGDLTTDLSY-------------------PDIIKETQDTDPQKDEAQIANTNGPQEKVLPIAS

Query:  SEDDMMNKEEEDDFKVKLIQWLKDNNLKLATTMIYFPQQMAAKTASDQVGIGDERVKENGGNNFFK
         EDD+M KEEEDDFKVKLIQWLK+NNLKLATT+    QQ  AKTASDQVGI DERVKEN GN  FK
Subjt:  SEDDMMNKEEEDDFKVKLIQWLKDNNLKLATTMIYFPQQMAAKTASDQVGIGDERVKENGGNNFFK

TYK27679.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.63e-8762.65Show/hide
Query:  MDTFLQIGNACRGSFEVDKATMNMENLLEAKIKVRYNYCGFIPATIRIKDKNGHSFVVHSVTICSGKWLAERDVKIHGSFKRQTTIEFDNFNPKFKIPKN
        MDTFLQIGNACRGSFEVDKATMNMENLLEAKIKVRYNYCGFIPATIRIKDKNGHSFVVHSVTICSGKWLAERDVKIH                       
Subjt:  MDTFLQIGNACRGSFEVDKATMNMENLLEAKIKVRYNYCGFIPATIRIKDKNGHSFVVHSVTICSGKWLAERDVKIHGSFKRQTTIEFDNFNPKFKIPKN

Query:  KSSMAELTMEGNPTHSSRKINSSKEPKLRKKPGKKKGIQAKASYSCIPSLIVKPTQSNLHDDQHKRGDLTTDLSYPDIIKETQDTDPQKDEAQIANTNGP
                                                                         + D     S PDIIKETQDTDPQKDEAQIANTNGP
Subjt:  KSSMAELTMEGNPTHSSRKINSSKEPKLRKKPGKKKGIQAKASYSCIPSLIVKPTQSNLHDDQHKRGDLTTDLSYPDIIKETQDTDPQKDEAQIANTNGP

Query:  QEKVLPIASSEDDMMNKEEEDDFKVKLIQWLKDNNLKLATTMIYFPQQMAAKTASDQ
        QEKVLPIASSEDDMMNKEEEDDFKVKLIQWLKDNNLKLATTMIYFPQQMAAKTASDQ
Subjt:  QEKVLPIASSEDDMMNKEEEDDFKVKLIQWLKDNNLKLATTMIYFPQQMAAKTASDQ

TYK29852.1 hypothetical protein E5676_scaffold208G00930 [Cucumis melo var. makuwa]3.09e-5745.61Show/hide
Query:  MDTFLQIGNACRGSFEVDKATMNMENLLEAKIKVRYNYCGFIPATIRIKDKNGHSFVVHSVTICSGKWLAERDVKIHGSFKRQTTIEFDNFNPK------
        +DTFLQIGN+  G  EV+KATMNM+NL+EAKIKVRYNY GFI ATIRIKDK+GH FVVH+VTICSGKWLAERDVKIHGSFKRQ  IEFD FN K      
Subjt:  MDTFLQIGNACRGSFEVDKATMNMENLLEAKIKVRYNYCGFIPATIRIKDKNGHSFVVHSVTICSGKWLAERDVKIHGSFKRQTTIEFDNFNPK------

Query:  ----------FKIPKNKSSMAELTMEGNPTHSSRKINSSKEPKLRKKPGKKKGIQAKASYSCIPSLIVKPTQSNLHDDQH------------------KR
                  FKI +N   M ELT E +PT + +KI     PK  KK  K+  ++    +    ++I         + +H                  ++
Subjt:  ----------FKIPKNKSSMAELTMEGNPTHSSRKINSSKEPKLRKKPGKKKGIQAKASYSCIPSLIVKPTQSNLHDDQH------------------KR

Query:  GDLTTDLSYPDIIKETQDTDPQKDEAQIANTNGPQEKVLPIASSEDDMMNKEEEDDFKVKLIQWLKDNNLKLATTMIYFPQQMAA
         +  TD S  D++KETQD+  +K   Q  N+   + + +    +E  M+ KEEED FK KLIQ LK+NNLKL  +++   QQ  +
Subjt:  GDLTTDLSYPDIIKETQDTDPQKDEAQIANTNGPQEKVLPIASSEDDMMNKEEEDDFKVKLIQWLKDNNLKLATTMIYFPQQMAA

TrEMBL top hitse value%identityAlignment
A0A5A7UN08 LINE-1 retrotransposable element ORF2 protein4.2e-7363.04Show/hide
Query:  MDTFLQIGNACRGSFEVDKATMNMENLLEAKIKVRYNYCGFIPATIRIKDKNGHSFVVHSVTICSGKWLAERDVKIHGSFKRQTTIEFDNFNPKFKIPKN
        MDTFLQIGNACRGSFEVDKATMNMENLLEAKIKVRYNYCGFIPATIRIKDKNGHSFVVHSVTICSGKWLAERDVKIH                      +
Subjt:  MDTFLQIGNACRGSFEVDKATMNMENLLEAKIKVRYNYCGFIPATIRIKDKNGHSFVVHSVTICSGKWLAERDVKIHGSFKRQTTIEFDNFNPKFKIPKN

Query:  KSSMAELTMEGNPTHSSRKINSSKEPKLRKKPGKKKGIQAKASYSCIPSLIVKPTQSNLHDDQHKRGDLTTDLSYPDIIKETQDTDPQKDEAQIANTNGP
        KS                                                                       S PDIIKETQDTDPQKDEAQIANTNGP
Subjt:  KSSMAELTMEGNPTHSSRKINSSKEPKLRKKPGKKKGIQAKASYSCIPSLIVKPTQSNLHDDQHKRGDLTTDLSYPDIIKETQDTDPQKDEAQIANTNGP

Query:  QEKVLPIASSEDDMMNKEEEDDFKVKLIQWLKDNNLKLATTMIYFPQQMAAKTASDQ
        QEKVLPIASSEDDMMNKEEEDDFKVKLIQWLKDNNLKLATTMIYFPQQMAAKTASDQ
Subjt:  QEKVLPIASSEDDMMNKEEEDDFKVKLIQWLKDNNLKLATTMIYFPQQMAAKTASDQ

A0A5D3BRD1 Uncharacterized protein1.7e-9357.1Show/hide
Query:  MDTFLQIGNACRGSFEVDKATMNMENLLEAKIKVRYNYCGFIPATIRIKDKNGHSFVVHSVTICSGKWLAERDVKIHGSFKRQTTIEFDNFN--------
        MDTFLQ GNAC    EVDKA MN+ENLLEAKI VRYNYC FIPATI+IKDKNGHSF+VH VTICSGKWLAERDVKI+ SFKRQ  IEFDNFN        
Subjt:  MDTFLQIGNACRGSFEVDKATMNMENLLEAKIKVRYNYCGFIPATIRIKDKNGHSFVVHSVTICSGKWLAERDVKIHGSFKRQTTIEFDNFN--------

Query:  --------PKFKIPKNKSSMAELTMEGNPTH--------------------------------------------------------SSRKINSSKEPKL
                 +F+IPKNKS MAELT+EGNPTH                                                        SSRK NS+ EPK 
Subjt:  --------PKFKIPKNKSSMAELTMEGNPTH--------------------------------------------------------SSRKINSSKEPKL

Query:  RKKPGKKKGIQAKASYSCIPSLIVKPTQSNLHDDQHKRGDLTTDL-------------------SYPDIIKETQDTDPQKDEAQIANTNGPQEKVLPIAS
        RKKPGKK+    K +   IPSLIVKPTQSN  DDQHK GDLT DL                   S PDI+K TQDTD QK +AQIAN   PQE VLP  S
Subjt:  RKKPGKKKGIQAKASYSCIPSLIVKPTQSNLHDDQHKRGDLTTDL-------------------SYPDIIKETQDTDPQKDEAQIANTNGPQEKVLPIAS

Query:  SEDDMMNKEEEDDFKVKLIQWLKDNNLKLATTMIYFPQQMAAKTASDQVGIGDERVKENGGNNFFK
         EDD+M KEEEDDFKVKLIQWLK+NNLKLATT+    QQ  AKTASDQVGI DERVKEN GN  FK
Subjt:  SEDDMMNKEEEDDFKVKLIQWLKDNNLKLATTMIYFPQQMAAKTASDQVGIGDERVKENGGNNFFK

A0A5D3C5Y8 Uncharacterized protein3.6e-5645.45Show/hide
Query:  ICSGKWLAERDVKIHGSFKRQTTIEFDNFNPK----------------FKIPKNKSSMAELTMEGNPTH-------------------------------
        + SGKWLAERDV+IH SFKRQ  IEFDNFNPK                F+IPKNKS M +LT+EGNPT+                               
Subjt:  ICSGKWLAERDVKIHGSFKRQTTIEFDNFNPK----------------FKIPKNKSSMAELTMEGNPTH-------------------------------

Query:  --------------------------------------------------------------SSRKINSSKEPKLRKKPGKKKGIQAKASYSCIPSLIVK
                                                                      SSRKINS  E K RKKPGK K  + K   S IPSLIVK
Subjt:  --------------------------------------------------------------SSRKINSSKEPKLRKKPGKKKGIQAKASYSCIPSLIVK

Query:  PTQSNLHDDQHKRGDLTTDL-------------------SYPDIIKETQDTDPQKDEAQIANTNGPQEKVLPIASSEDDMMNKEEEDDFKVKLIQWLKDN
        PTQS L  DQ+K GDLT ++                   S PD + ETQD DP+KDEAQIANT G QE  L IAS E DM NKE ED FKVKLIQWL+DN
Subjt:  PTQSNLHDDQHKRGDLTTDL-------------------SYPDIIKETQDTDPQKDEAQIANTNGPQEKVLPIASSEDDMMNKEEEDDFKVKLIQWLKDN

Query:  NLKLATTMIYFPQQMAAKTASDQVGIGDERVKENGGNNFFK
        NLKLATT+I  PQQMAA+TASDQVGIGDER ++NG NNFFK
Subjt:  NLKLATTMIYFPQQMAAKTASDQVGIGDERVKENGGNNFFK

A0A5D3DW73 LINE-1 retrotransposable element ORF2 protein4.2e-7363.04Show/hide
Query:  MDTFLQIGNACRGSFEVDKATMNMENLLEAKIKVRYNYCGFIPATIRIKDKNGHSFVVHSVTICSGKWLAERDVKIHGSFKRQTTIEFDNFNPKFKIPKN
        MDTFLQIGNACRGSFEVDKATMNMENLLEAKIKVRYNYCGFIPATIRIKDKNGHSFVVHSVTICSGKWLAERDVKIH                      +
Subjt:  MDTFLQIGNACRGSFEVDKATMNMENLLEAKIKVRYNYCGFIPATIRIKDKNGHSFVVHSVTICSGKWLAERDVKIHGSFKRQTTIEFDNFNPKFKIPKN

Query:  KSSMAELTMEGNPTHSSRKINSSKEPKLRKKPGKKKGIQAKASYSCIPSLIVKPTQSNLHDDQHKRGDLTTDLSYPDIIKETQDTDPQKDEAQIANTNGP
        KS                                                                       S PDIIKETQDTDPQKDEAQIANTNGP
Subjt:  KSSMAELTMEGNPTHSSRKINSSKEPKLRKKPGKKKGIQAKASYSCIPSLIVKPTQSNLHDDQHKRGDLTTDLSYPDIIKETQDTDPQKDEAQIANTNGP

Query:  QEKVLPIASSEDDMMNKEEEDDFKVKLIQWLKDNNLKLATTMIYFPQQMAAKTASDQ
        QEKVLPIASSEDDMMNKEEEDDFKVKLIQWLKDNNLKLATTMIYFPQQMAAKTASDQ
Subjt:  QEKVLPIASSEDDMMNKEEEDDFKVKLIQWLKDNNLKLATTMIYFPQQMAAKTASDQ

A0A5D3E1T4 DUF4283 domain-containing protein4.3e-4947Show/hide
Query:  MDTFLQIGNACRGSFEVDKATMNMENLLEAKIKVRYNYCGFIPATIRIKDKNGHSFVVHSVTICSGKWLAERDVKIHGSFKRQTTIEFDNFNP-------
        +DTFLQIGN+  G  EV+KATMNM+NL+EAKIKVRYNY GFI ATIRIKDK+GH FVVH+VTICSGKWLAERDVKIHGSFKRQ  IEFD FN        
Subjt:  MDTFLQIGNACRGSFEVDKATMNMENLLEAKIKVRYNYCGFIPATIRIKDKNGHSFVVHSVTICSGKWLAERDVKIHGSFKRQTTIEFDNFNP-------

Query:  ---------KFKIPKNKSSMAELTMEGNPTHSSRKINSSKEPKLRKKPGKK-----KGIQAKA---------SYSCIPSL--IVKPTQSNLHDDQHKRGD
                 KFKI +N   M ELT E +PT  ++KI     PK  KK  K+     + ++ +A         S++   S   I      +L     ++ +
Subjt:  ---------KFKIPKNKSSMAELTMEGNPTHSSRKINSSKEPKLRKKPGKK-----KGIQAKA---------SYSCIPSL--IVKPTQSNLHDDQHKRGD

Query:  LTTDLSYPDIIKETQDTDPQKDEAQIANTNGPQEKVLPIASSEDDMMNKEEEDDFKVKLIQWLKDNNLKLATTMIYFPQQMAA
          TD S  D++KETQD+  +K   Q  N+   + + +    +E  M+ KEEED FK KLIQ LK+NNLKL  +++   QQ  +
Subjt:  LTTDLSYPDIIKETQDTDPQKDEAQIANTNGPQEKVLPIASSEDDMMNKEEEDDFKVKLIQWLKDNNLKLATTMIYFPQQMAA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACACTTTCCTTCAAATTGGAAATGCATGTAGAGGTTCGTTCGAAGTAGACAAAGCTACAATGAATATGGAAAATCTCCTTGAAGCCAAAATTAAGGTAAGGTACAA
CTATTGTGGTTTCATTCCAGCCACCATTAGAATCAAAGATAAAAATGGTCATTCTTTCGTTGTTCACTCAGTTACAATATGCTCGGGCAAGTGGTTAGCTGAACGCGATG
TTAAAATACACGGTTCTTTCAAGAGACAGACAACCATTGAATTTGACAACTTCAACCCAAAATTTAAAATCCCAAAAAACAAATCATCAATGGCAGAGTTGACAATGGAA
GGAAATCCCACACATTCATCAAGAAAAATCAACAGCAGTAAGGAACCGAAGCTAAGAAAGAAACCAGGGAAAAAAAAAGGAATACAGGCCAAAGCCTCCTATTCCTGTAT
TCCTAGCCTAATTGTAAAACCAACCCAATCGAACCTTCACGATGACCAACACAAAAGAGGTGATCTCACTACTGATTTGAGCTACCCAGATATTATCAAGGAAACACAAG
ACACAGACCCTCAAAAGGATGAAGCTCAAATCGCAAATACAAATGGTCCTCAAGAAAAAGTTTTGCCGATAGCTTCATCTGAGGACGACATGATGAACAAAGAAGAAGAA
GATGATTTCAAGGTCAAACTAATCCAGTGGCTCAAAGACAACAACTTGAAATTGGCTACCACAATGATTTACTTTCCTCAACAAATGGCCGCAAAAACTGCTTCTGATCA
GGTTGGAATTGGGGACGAAAGGGTCAAAGAAAATGGGGGAAATAACTTCTTTAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGACACTTTCCTTCAAATTGGAAATGCATGTAGAGGTTCGTTCGAAGTAGACAAAGCTACAATGAATATGGAAAATCTCCTTGAAGCCAAAATTAAGGTAAGGTACAA
CTATTGTGGTTTCATTCCAGCCACCATTAGAATCAAAGATAAAAATGGTCATTCTTTCGTTGTTCACTCAGTTACAATATGCTCGGGCAAGTGGTTAGCTGAACGCGATG
TTAAAATACACGGTTCTTTCAAGAGACAGACAACCATTGAATTTGACAACTTCAACCCAAAATTTAAAATCCCAAAAAACAAATCATCAATGGCAGAGTTGACAATGGAA
GGAAATCCCACACATTCATCAAGAAAAATCAACAGCAGTAAGGAACCGAAGCTAAGAAAGAAACCAGGGAAAAAAAAAGGAATACAGGCCAAAGCCTCCTATTCCTGTAT
TCCTAGCCTAATTGTAAAACCAACCCAATCGAACCTTCACGATGACCAACACAAAAGAGGTGATCTCACTACTGATTTGAGCTACCCAGATATTATCAAGGAAACACAAG
ACACAGACCCTCAAAAGGATGAAGCTCAAATCGCAAATACAAATGGTCCTCAAGAAAAAGTTTTGCCGATAGCTTCATCTGAGGACGACATGATGAACAAAGAAGAAGAA
GATGATTTCAAGGTCAAACTAATCCAGTGGCTCAAAGACAACAACTTGAAATTGGCTACCACAATGATTTACTTTCCTCAACAAATGGCCGCAAAAACTGCTTCTGATCA
GGTTGGAATTGGGGACGAAAGGGTCAAAGAAAATGGGGGAAATAACTTCTTTAAATGA
Protein sequenceShow/hide protein sequence
MDTFLQIGNACRGSFEVDKATMNMENLLEAKIKVRYNYCGFIPATIRIKDKNGHSFVVHSVTICSGKWLAERDVKIHGSFKRQTTIEFDNFNPKFKIPKNKSSMAELTME
GNPTHSSRKINSSKEPKLRKKPGKKKGIQAKASYSCIPSLIVKPTQSNLHDDQHKRGDLTTDLSYPDIIKETQDTDPQKDEAQIANTNGPQEKVLPIASSEDDMMNKEEE
DDFKVKLIQWLKDNNLKLATTMIYFPQQMAAKTASDQVGIGDERVKENGGNNFFK