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IVF0014762 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0014762
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Descriptiontranscription factor PRE6-like
Genome locationchr03:20793207..20794363
RNA-Seq ExpressionIVF0014762
SyntenyIVF0014762
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0009416 - response to light stimulus (biological process)
GO:0040008 - regulation of growth (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR011598 - Myc-type, basic helix-loop-helix (bHLH) domain
IPR036638 - Helix-loop-helix DNA-binding domain superfamily
IPR044293 - Transcription factor PRE


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004146747.1 transcription factor PRE6 [Cucumis sativus]2.45e-5294.79Show/hide
Query:  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFL
        MSSRRSSRSRNS+A+SPLISDDQIADLVSKLQRLIPELRNPRASHK SASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEA IIRSLF+
Subjt:  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFL

XP_008465587.1 PREDICTED: transcription factor PRE6-like [Cucumis melo]8.88e-55100Show/hide
Query:  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFL
        MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFL
Subjt:  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFL

XP_022946595.1 transcription factor PRE6-like [Cucurbita moschata]2.71e-4488.54Show/hide
Query:  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFL
        MSSRRSSRSRNSS +   ISDDQI+DLVSKLQRLIPE+RN R SHKVSAS+VLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLF+
Subjt:  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFL

XP_023546056.1 transcription factor PRE6-like [Cucurbita pepo subsp. pepo]7.78e-4487.5Show/hide
Query:  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFL
        MSSRRSSRSRN+S +   ISDDQI+DLVSKLQRLIPE+RN R SHKVSAS+VLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLF+
Subjt:  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFL

XP_038886241.1 transcription factor PRE6-like [Benincasa hispida]9.32e-5092.71Show/hide
Query:  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFL
        MSSRRSSRSRNSS + PLISDDQI+DLVSKLQRLIPELRNPRASHKVSAS+VLQETCNYIRNLHREVDDLSERLSQLLA+TENDSAEAAIIRSLF+
Subjt:  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFL

TrEMBL top hitse value%identityAlignment
A0A0A0KDL6 BHLH domain-containing protein2.0e-3894.79Show/hide
Query:  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFL
        MSSRRSSRSRNS+A+SPLISDDQIADLVSKLQRLIPELRNPRASHK SASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEA IIRSLF+
Subjt:  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFL

A0A1S3CPL2 transcription factor PRE6-like2.8e-40100Show/hide
Query:  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFL
        MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFL
Subjt:  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFL

A0A5D3BPI2 Transcription factor PRE6-like2.8e-40100Show/hide
Query:  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFL
        MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFL
Subjt:  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFL

A0A6J1G4C0 transcription factor PRE6-like2.8e-3288.54Show/hide
Query:  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFL
        MSSRRSSRSRNSS +   ISDDQI+DLVSKLQRLIPE+RN R SHKVSAS+VLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLF+
Subjt:  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFL

A0A6J1KGK3 transcription factor PRE6-like2.8e-3288.54Show/hide
Query:  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFL
        MSSRRSSRSRNSS +   ISDDQI+DLVSKLQRLIPE+RN R SHKVSAS+VLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLF+
Subjt:  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFL

SwissProt top hitse value%identityAlignment
F4JCN9 Transcription factor PRE43.3e-2268.09Show/hide
Query:  SRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFL
        S R SRSR + AS  +I+D+QI DLV +L RL+PEL N R S KVSASRVLQETC+YIRNL +EVDDLSERLSQLL +T  DSA+AA+IRSL +
Subjt:  SRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFL

Q8GW32 Transcription factor PRE61.8e-2879.79Show/hide
Query:  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSL
        MSSRRSSRSR S +S   ISDDQI+DLVSKLQ LIPELR  R S KVSAS+VLQETCNYIRNLHREVDDLS+RLS+LLA+T+++SAEAAIIRSL
Subjt:  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSL

Q9CA64 Transcription factor PRE31.0e-2371.28Show/hide
Query:  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSL
        MS RR SRSR SS +S  IS+DQI DL+ KLQ+L+PELR+ R S KVSA+RVLQ+TCNYIRNLHREVDDLSERLS+LLA   +D+A+AA+IRSL
Subjt:  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSL

Q9FLE9 Transcription factor PRE18.8e-2362.5Show/hide
Query:  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFL
        MS+RRS      S+S+P ISD+Q+ DLVSKL++++PE+   R S K SAS+VLQETCNYIRNL+REVD+LSERLSQLL + + DS EAA+IRSL +
Subjt:  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFL

Q9LJX1 Transcription factor PRE58.8e-2362.5Show/hide
Query:  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFL
        MS+RRS ++ N+S     ISDDQ+ DLVSKL++ +PE+   R S KVSAS+VLQETCNYIR LHREVD+LS+RLSQLL + + DS EAA+IRSL +
Subjt:  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFL

Arabidopsis top hitse value%identityAlignment
AT1G26945.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein1.3e-2979.79Show/hide
Query:  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSL
        MSSRRSSRSR S +S   ISDDQI+DLVSKLQ LIPELR  R S KVSAS+VLQETCNYIRNLHREVDDLS+RLS+LLA+T+++SAEAAIIRSL
Subjt:  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSL

AT1G74500.1 activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 17.4e-2571.28Show/hide
Query:  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSL
        MS RR SRSR SS +S  IS+DQI DL+ KLQ+L+PELR+ R S KVSA+RVLQ+TCNYIRNLHREVDDLSERLS+LLA   +D+A+AA+IRSL
Subjt:  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSL

AT3G28857.1 basic helix-loop-helix (bHLH) DNA-binding family protein6.2e-2462.5Show/hide
Query:  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFL
        MS+RRS ++ N+S     ISDDQ+ DLVSKL++ +PE+   R S KVSAS+VLQETCNYIR LHREVD+LS+RLSQLL + + DS EAA+IRSL +
Subjt:  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFL

AT3G47710.1 BANQUO 32.4e-2368.09Show/hide
Query:  SRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFL
        S R SRSR + AS  +I+D+QI DLV +L RL+PEL N R S KVSASRVLQETC+YIRNL +EVDDLSERLSQLL +T  DSA+AA+IRSL +
Subjt:  SRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFL

AT5G39860.1 basic helix-loop-helix (bHLH) DNA-binding family protein6.2e-2462.5Show/hide
Query:  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFL
        MS+RRS      S+S+P ISD+Q+ DLVSKL++++PE+   R S K SAS+VLQETCNYIRNL+REVD+LSERLSQLL + + DS EAA+IRSL +
Subjt:  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTTCAAGAAGATCTTCTCGCTCCAGAAACTCCTCAGCTTCTTCTCCATTAATCTCCGACGATCAAATCGCTGATCTTGTTTCTAAGTTGCAACGTCTCATACCCGA
GCTTCGTAATCCCCGTGCCTCCCACAAGGTGTCGGCTTCAAGAGTGTTACAAGAAACATGCAACTACATAAGGAACTTACACAGAGAAGTGGATGATTTAAGTGAGCGAT
TGTCACAACTTTTGGCAGCAACTGAAAACGACAGCGCCGAGGCTGCCATTATTAGGAGTTTATTTCTGTAA
mRNA sequenceShow/hide mRNA sequence
GTCCTTTAATTTCTCTCAGCTCCCTAAAAACTTCTCTAATTGCCTTCATCACAACTATTTTTTTCATCATGTCTTCAAGAAGATCTTCTCGCTCCAGAAACTCCTCAGCT
TCTTCTCCATTAATCTCCGACGATCAAATCGCTGATCTTGTTTCTAAGTTGCAACGTCTCATACCCGAGCTTCGTAATCCCCGTGCCTCCCACAAGGTGTCGGCTTCAAG
AGTGTTACAAGAAACATGCAACTACATAAGGAACTTACACAGAGAAGTGGATGATTTAAGTGAGCGATTGTCACAACTTTTGGCAGCAACTGAAAACGACAGCGCCGAGG
CTGCCATTATTAGGAGTTTATTTCTGTAAAGAACCCATTTAAATAACCACAGTTTCCCTACCCATAAATTAATTACTACGACGTCGTTAATTTCCCTTTTTCATTC
Protein sequenceShow/hide protein sequence
MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFL