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IVF0014808 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0014808
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr02:20624854..20625204
RNA-Seq ExpressionIVF0014808
SyntenyIVF0014808
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037088.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]4.46e-5479.82Show/hide
Query:  GGSRCEHPFRRWTDSELQARKDKGLCYRCDKPFSKGHHYKNKKLRLCVVVDDLDDAEMEEIVNEGAMVEVSPVVELSLNSVVGLTMQGTFKIKGRVEDRE
        GG R EHP+RRWTDSELQARK+KGLCYRCD+PFSKGH  KNKKL L VV DDLDDAEM E+  E  MVEVSP+V+LSLNSVVGLT  GTFKIKG+VE+RE
Subjt:  GGSRCEHPFRRWTDSELQARKDKGLCYRCDKPFSKGHHYKNKKLRLCVVVDDLDDAEMEEIVNEGAMVEVSPVVELSLNSVVGLTMQGTFKIKGRVEDRE

Query:  IVVMIDCGATHNFI
        +VVMIDCGATHNFI
Subjt:  IVVMIDCGATHNFI

KAA0045702.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]9.18e-5173.68Show/hide
Query:  GGSRCEHPFRRWTDSELQARKDKGLCYRCDKPFSKGHHYKNKKLRLCVVVDDLDDAEMEEIVNEGAMVEVSPVVELSLNSVVGLTMQGTFKIKGRVEDRE
        GG R E  +RRW DS+LQARK+KGLCYRCDKPFSKGH  KN++L+LCVV DDL D EM E  N+G MVE+ P+VELSL+SVVGLT  GT KIKG+VEDRE
Subjt:  GGSRCEHPFRRWTDSELQARKDKGLCYRCDKPFSKGHHYKNKKLRLCVVVDDLDDAEMEEIVNEGAMVEVSPVVELSLNSVVGLTMQGTFKIKGRVEDRE

Query:  IVVMIDCGATHNFI
        +VVMIDCGATHNFI
Subjt:  IVVMIDCGATHNFI

KAA0058079.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.44e-7696.55Show/hide
Query:  MKGGSRCEHPFRRWTDSELQARKDKGLCYRCDKPFSKGHHYKNKKLRLCVVVDDLDDAEMEEIVNEGAMVEVSPVVELSLNSVVGLTMQGTFKIKGRVED
        M+GGSRCEHPFRRWTDSELQARKDKGLCYRCDKPFSKGHH KNKKLRLCVVVDDLDDAEMEEIVN+GAMVEVSPVVELSLNSVVGLT+QGTFKIKGRVED
Subjt:  MKGGSRCEHPFRRWTDSELQARKDKGLCYRCDKPFSKGHHYKNKKLRLCVVVDDLDDAEMEEIVNEGAMVEVSPVVELSLNSVVGLTMQGTFKIKGRVED

Query:  REIVVMIDCGATHNFI
        REIVVMIDCGATHNFI
Subjt:  REIVVMIDCGATHNFI

TYK05776.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]3.66e-6079.31Show/hide
Query:  MKGGSRCEHPFRRWTDSELQARKDKGLCYRCDKPFSKGHHYKNKKLRLCVVVDDLDDAEMEEIVNEGAMVEVSPVVELSLNSVVGLTMQGTFKIKGRVED
        + GGSR E PF+RWTDS+LQAR+DKGLCYRCD+PFSK H  KNK+LRLCVV D+LDDAEME+I+N+G MVEVSPVVELSLNSVVGLT  GTFK+KG VED
Subjt:  MKGGSRCEHPFRRWTDSELQARKDKGLCYRCDKPFSKGHHYKNKKLRLCVVVDDLDDAEMEEIVNEGAMVEVSPVVELSLNSVVGLTMQGTFKIKGRVED

Query:  REIVVMIDCGATHNFI
        REI++MIDCGATHNFI
Subjt:  REIVVMIDCGATHNFI

TYK28432.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]9.00e-80100Show/hide
Query:  MKGGSRCEHPFRRWTDSELQARKDKGLCYRCDKPFSKGHHYKNKKLRLCVVVDDLDDAEMEEIVNEGAMVEVSPVVELSLNSVVGLTMQGTFKIKGRVED
        MKGGSRCEHPFRRWTDSELQARKDKGLCYRCDKPFSKGHHYKNKKLRLCVVVDDLDDAEMEEIVNEGAMVEVSPVVELSLNSVVGLTMQGTFKIKGRVED
Subjt:  MKGGSRCEHPFRRWTDSELQARKDKGLCYRCDKPFSKGHHYKNKKLRLCVVVDDLDDAEMEEIVNEGAMVEVSPVVELSLNSVVGLTMQGTFKIKGRVED

Query:  REIVVMIDCGATHNFI
        REIVVMIDCGATHNFI
Subjt:  REIVVMIDCGATHNFI

TrEMBL top hitse value%identityAlignment
A0A5A7UX42 Ty3-gypsy retrotransposon protein2.1e-5896.55Show/hide
Query:  MKGGSRCEHPFRRWTDSELQARKDKGLCYRCDKPFSKGHHYKNKKLRLCVVVDDLDDAEMEEIVNEGAMVEVSPVVELSLNSVVGLTMQGTFKIKGRVED
        M+GGSRCEHPFRRWTDSELQARKDKGLCYRCDKPFSKGHH KNKKLRLCVVVDDLDDAEMEEIVN+GAMVEVSPVVELSLNSVVGLT+QGTFKIKGRVED
Subjt:  MKGGSRCEHPFRRWTDSELQARKDKGLCYRCDKPFSKGHHYKNKKLRLCVVVDDLDDAEMEEIVNEGAMVEVSPVVELSLNSVVGLTMQGTFKIKGRVED

Query:  REIVVMIDCGATHNFI
        REIVVMIDCGATHNFI
Subjt:  REIVVMIDCGATHNFI

A0A5D3BL18 Ty3/gypsy retrotransposon protein1.3e-4276.11Show/hide
Query:  GSRCEHPFRRWTDSELQARKDKGLCYRCDKPFSKGHHYKNKKLRLCVVVDDLDDAEMEEIVNEGAMVEVSPVVELSLNSVVGLTMQGTFKIKGRVEDREI
        G R E+ FRRWTDSELQAR+DKGLCYRCD+PFSKGH  KNK+L LCVV DDL D EME+  +EG MVEVSPVVELSLN VVGLT  GTFK+KG V+DRE 
Subjt:  GSRCEHPFRRWTDSELQARKDKGLCYRCDKPFSKGHHYKNKKLRLCVVVDDLDDAEMEEIVNEGAMVEVSPVVELSLNSVVGLTMQGTFKIKGRVEDREI

Query:  VVMIDCGATHNFI
        V+M+DCGATHNFI
Subjt:  VVMIDCGATHNFI

A0A5D3C600 Ty3-gypsy retrotransposon protein3.8e-4779.31Show/hide
Query:  MKGGSRCEHPFRRWTDSELQARKDKGLCYRCDKPFSKGHHYKNKKLRLCVVVDDLDDAEMEEIVNEGAMVEVSPVVELSLNSVVGLTMQGTFKIKGRVED
        + GGSR E PF+RWTDS+LQAR+DKGLCYRCD+PFSK H  KNK+LRLCVV D+LDDAEME+I+N+G MVEVSPVVELSLNSVVGLT  GTFK+KG VED
Subjt:  MKGGSRCEHPFRRWTDSELQARKDKGLCYRCDKPFSKGHHYKNKKLRLCVVVDDLDDAEMEEIVNEGAMVEVSPVVELSLNSVVGLTMQGTFKIKGRVED

Query:  REIVVMIDCGATHNFI
        REI++MIDCGATHNFI
Subjt:  REIVVMIDCGATHNFI

A0A5D3C895 Ty3-gypsy retrotransposon protein3.5e-4579.82Show/hide
Query:  GGSRCEHPFRRWTDSELQARKDKGLCYRCDKPFSKGHHYKNKKLRLCVVVDDLDDAEMEEIVNEGAMVEVSPVVELSLNSVVGLTMQGTFKIKGRVEDRE
        GG R EHP+RRWTDSELQARK+KGLCYRCD+PFSKGH  KNKKL L VV DDLDDAEM E+  E  MVEVSP+V+LSLNSVVGLT  GTFKIKG+VE+RE
Subjt:  GGSRCEHPFRRWTDSELQARKDKGLCYRCDKPFSKGHHYKNKKLRLCVVVDDLDDAEMEEIVNEGAMVEVSPVVELSLNSVVGLTMQGTFKIKGRVEDRE

Query:  IVVMIDCGATHNFI
        +VVMIDCGATHNFI
Subjt:  IVVMIDCGATHNFI

A0A5D3DY19 Ty3-gypsy retrotransposon protein7.8e-61100Show/hide
Query:  MKGGSRCEHPFRRWTDSELQARKDKGLCYRCDKPFSKGHHYKNKKLRLCVVVDDLDDAEMEEIVNEGAMVEVSPVVELSLNSVVGLTMQGTFKIKGRVED
        MKGGSRCEHPFRRWTDSELQARKDKGLCYRCDKPFSKGHHYKNKKLRLCVVVDDLDDAEMEEIVNEGAMVEVSPVVELSLNSVVGLTMQGTFKIKGRVED
Subjt:  MKGGSRCEHPFRRWTDSELQARKDKGLCYRCDKPFSKGHHYKNKKLRLCVVVDDLDDAEMEEIVNEGAMVEVSPVVELSLNSVVGLTMQGTFKIKGRVED

Query:  REIVVMIDCGATHNFI
        REIVVMIDCGATHNFI
Subjt:  REIVVMIDCGATHNFI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGGAGGAAGCCGATGTGAACACCCTTTTCGACGATGGACTGATTCAGAACTTCAAGCGAGGAAAGATAAAGGGTTATGTTATCGATGTGACAAACCGTTTAGTAA
GGGCCACCACTACAAAAATAAGAAGCTTCGACTGTGTGTAGTAGTCGATGATCTTGACGATGCGGAGATGGAAGAAATAGTGAACGAGGGAGCCATGGTAGAAGTTAGTC
CTGTCGTGGAGTTATCTCTAAATTCGGTGGTGGGTCTCACGATGCAGGGCACGTTTAAGATCAAAGGTAGGGTGGAAGATCGGGAGATTGTGGTCATGATAGACTGTGGA
GCCACCCATAATTTCATCTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAAGGAGGAAGCCGATGTGAACACCCTTTTCGACGATGGACTGATTCAGAACTTCAAGCGAGGAAAGATAAAGGGTTATGTTATCGATGTGACAAACCGTTTAGTAA
GGGCCACCACTACAAAAATAAGAAGCTTCGACTGTGTGTAGTAGTCGATGATCTTGACGATGCGGAGATGGAAGAAATAGTGAACGAGGGAGCCATGGTAGAAGTTAGTC
CTGTCGTGGAGTTATCTCTAAATTCGGTGGTGGGTCTCACGATGCAGGGCACGTTTAAGATCAAAGGTAGGGTGGAAGATCGGGAGATTGTGGTCATGATAGACTGTGGA
GCCACCCATAATTTCATCTAA
Protein sequenceShow/hide protein sequence
MKGGSRCEHPFRRWTDSELQARKDKGLCYRCDKPFSKGHHYKNKKLRLCVVVDDLDDAEMEEIVNEGAMVEVSPVVELSLNSVVGLTMQGTFKIKGRVEDREIVVMIDCG
ATHNFI