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IVF0014830 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0014830
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr04:13279763..13280146
RNA-Seq ExpressionIVF0014830
SyntenyIVF0014830
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038045.1 uncharacterized protein E6C27_scaffold36G002470 [Cucumis melo var. makuwa]1.96e-85100Show/hide
Query:  MPPPQAPPMVINHNDNQDEGDGSDGLDDDQVTLLEESRREGHEVVRRKGRGRAYQNIQRRAQQEAPQFERNIEAIKFKISKFFGKTDPEEYIQWEKEVEN
        MPPPQAPPMVINHNDNQDEGDGSDGLDDDQVTLLEESRREGHEVVRRKGRGRAYQNIQRRAQQEAPQFERNIEAIKFKISKFFGKTDPEEYIQWEKEVEN
Subjt:  MPPPQAPPMVINHNDNQDEGDGSDGLDDDQVTLLEESRREGHEVVRRKGRGRAYQNIQRRAQQEAPQFERNIEAIKFKISKFFGKTDPEEYIQWEKEVEN

Query:  VFACHNFTNEQKVRFCVFKFKDYAQTR
        VFACHNFTNEQKVRFCVFKFKDYAQTR
Subjt:  VFACHNFTNEQKVRFCVFKFKDYAQTR

KAA0040916.1 uncharacterized protein E6C27_scaffold125G00290 [Cucumis melo var. makuwa]4.26e-4182.56Show/hide
Query:  GHEVVRRKGRGRAYQNIQRRAQQEAPQFERNIEAIKFKISKFFGKTDPEEYIQWEKEVENVFACHNFTNEQKVRFCVFKFKDYAQT
        G+ VVRR+GR RAYQNIQRRAQQEAP+FE N+ AIKFKI KFF KTDPEEYIQWEKEVENVF CHNF +EQKVRFCV KFKDYA T
Subjt:  GHEVVRRKGRGRAYQNIQRRAQQEAPQFERNIEAIKFKISKFFGKTDPEEYIQWEKEVENVFACHNFTNEQKVRFCVFKFKDYAQT

KAA0043652.1 uncharacterized protein E6C27_scaffold320G001000 [Cucumis melo var. makuwa]5.83e-6683.33Show/hide
Query:  MPPPQAPPMVINHNDNQDEGDGSDGLDDDQVTLLEESRREGHEVVRRKGRGRAYQNIQRRAQQEAPQFERNIEAIKFKISKFFGKTDPEEYIQWEKEVEN
        MPPP APPM+INHNDNQDEGDGSD LDDDQVTLL E RR GH VVRR+GRGRAYQNIQRRAQQEA QFE N+ AIKFKI KFF KTDP+EYI+WEKEVEN
Subjt:  MPPPQAPPMVINHNDNQDEGDGSDGLDDDQVTLLEESRREGHEVVRRKGRGRAYQNIQRRAQQEAPQFERNIEAIKFKISKFFGKTDPEEYIQWEKEVEN

Query:  VFACHNFTNEQKVRFCVFKFKDYAQT
        VF CHNFT+EQKVRF V K KDYAQT
Subjt:  VFACHNFTNEQKVRFCVFKFKDYAQT

KAA0047036.1 uncharacterized protein E6C27_scaffold829G00200 [Cucumis melo var. makuwa]3.21e-6681.75Show/hide
Query:  MPPPQAPPMVINHNDNQDEGDGSDGLDDDQVTLLEESRREGHEVVRRKGRGRAYQNIQRRAQQEAPQFERNIEAIKFKISKFFGKTDPEEYIQWEKEVEN
        MPPP AP M INHN+NQ EGDG D LDDDQVTLL E RR GH VVRR+G G+AYQNIQRR QQE PQ ERN+ AIKFKI KFFGKTDPEEYIQWEKEVEN
Subjt:  MPPPQAPPMVINHNDNQDEGDGSDGLDDDQVTLLEESRREGHEVVRRKGRGRAYQNIQRRAQQEAPQFERNIEAIKFKISKFFGKTDPEEYIQWEKEVEN

Query:  VFACHNFTNEQKVRFCVFKFKDYAQT
        VFACHNF+NEQKVRFCV KFKDY QT
Subjt:  VFACHNFTNEQKVRFCVFKFKDYAQT

TYK09709.1 uncharacterized protein E5676_scaffold447G001250 [Cucumis melo var. makuwa]3.09e-6683.33Show/hide
Query:  MPPPQAPPMVINHNDNQDEGDGSDGLDDDQVTLLEESRREGHEVVRRKGRGRAYQNIQRRAQQEAPQFERNIEAIKFKISKFFGKTDPEEYIQWEKEVEN
        MPPP APPM+INHNDNQDEGDGSD LDDDQVTLL E RR GH VVRR+GRGRAYQNIQRRAQQEA QFE N+ AIKFKI KFF KTDP+EYI+WEKEVEN
Subjt:  MPPPQAPPMVINHNDNQDEGDGSDGLDDDQVTLLEESRREGHEVVRRKGRGRAYQNIQRRAQQEAPQFERNIEAIKFKISKFFGKTDPEEYIQWEKEVEN

Query:  VFACHNFTNEQKVRFCVFKFKDYAQT
        VF CHNFT+EQKVRF V K KDYAQT
Subjt:  VFACHNFTNEQKVRFCVFKFKDYAQT

TrEMBL top hitse value%identityAlignment
A0A5A7T993 Retrotrans_gag domain-containing protein8.8e-66100Show/hide
Query:  MPPPQAPPMVINHNDNQDEGDGSDGLDDDQVTLLEESRREGHEVVRRKGRGRAYQNIQRRAQQEAPQFERNIEAIKFKISKFFGKTDPEEYIQWEKEVEN
        MPPPQAPPMVINHNDNQDEGDGSDGLDDDQVTLLEESRREGHEVVRRKGRGRAYQNIQRRAQQEAPQFERNIEAIKFKISKFFGKTDPEEYIQWEKEVEN
Subjt:  MPPPQAPPMVINHNDNQDEGDGSDGLDDDQVTLLEESRREGHEVVRRKGRGRAYQNIQRRAQQEAPQFERNIEAIKFKISKFFGKTDPEEYIQWEKEVEN

Query:  VFACHNFTNEQKVRFCVFKFKDYAQTR
        VFACHNFTNEQKVRFCVFKFKDYAQTR
Subjt:  VFACHNFTNEQKVRFCVFKFKDYAQTR

A0A5A7TK52 Retrotrans_gag domain-containing protein1.4e-5083.33Show/hide
Query:  MPPPQAPPMVINHNDNQDEGDGSDGLDDDQVTLLEESRREGHEVVRRKGRGRAYQNIQRRAQQEAPQFERNIEAIKFKISKFFGKTDPEEYIQWEKEVEN
        MPPP APPM+INHNDNQDEGDGSD LDDDQVTLL E RR GH VVRR+GRGRAYQNIQRRAQQEA QFE N+ AIKFKI KFF KTDP+EYI+WEKEVEN
Subjt:  MPPPQAPPMVINHNDNQDEGDGSDGLDDDQVTLLEESRREGHEVVRRKGRGRAYQNIQRRAQQEAPQFERNIEAIKFKISKFFGKTDPEEYIQWEKEVEN

Query:  VFACHNFTNEQKVRFCVFKFKDYAQT
        VF CHNFT+EQKVRF V K KDYAQT
Subjt:  VFACHNFTNEQKVRFCVFKFKDYAQT

A0A5A7TYI0 Uncharacterized protein5.2e-5081.75Show/hide
Query:  MPPPQAPPMVINHNDNQDEGDGSDGLDDDQVTLLEESRREGHEVVRRKGRGRAYQNIQRRAQQEAPQFERNIEAIKFKISKFFGKTDPEEYIQWEKEVEN
        MPPP AP M INHN+NQ EGDG D LDDDQVTLL E RR GH VVRR+G G+AYQNIQRR QQE PQ ERN+ AIKFKI KFFGKTDPEEYIQWEKEVEN
Subjt:  MPPPQAPPMVINHNDNQDEGDGSDGLDDDQVTLLEESRREGHEVVRRKGRGRAYQNIQRRAQQEAPQFERNIEAIKFKISKFFGKTDPEEYIQWEKEVEN

Query:  VFACHNFTNEQKVRFCVFKFKDYAQT
        VFACHNF+NEQKVRFCV KFKDY QT
Subjt:  VFACHNFTNEQKVRFCVFKFKDYAQT

A0A5D3CFQ1 CCHC-type domain-containing protein1.9e-3182.56Show/hide
Query:  GHEVVRRKGRGRAYQNIQRRAQQEAPQFERNIEAIKFKISKFFGKTDPEEYIQWEKEVENVFACHNFTNEQKVRFCVFKFKDYAQT
        G+ VVRR+GR RAYQNIQRRAQQEAP+FE N+ AIKFKI KFF KTDPEEYIQWEKEVENVF CHNF +EQKVRFCV KFKDYA T
Subjt:  GHEVVRRKGRGRAYQNIQRRAQQEAPQFERNIEAIKFKISKFFGKTDPEEYIQWEKEVENVFACHNFTNEQKVRFCVFKFKDYAQT

A0A5D3CHG3 Retrotrans_gag domain-containing protein1.4e-5083.33Show/hide
Query:  MPPPQAPPMVINHNDNQDEGDGSDGLDDDQVTLLEESRREGHEVVRRKGRGRAYQNIQRRAQQEAPQFERNIEAIKFKISKFFGKTDPEEYIQWEKEVEN
        MPPP APPM+INHNDNQDEGDGSD LDDDQVTLL E RR GH VVRR+GRGRAYQNIQRRAQQEA QFE N+ AIKFKI KFF KTDP+EYI+WEKEVEN
Subjt:  MPPPQAPPMVINHNDNQDEGDGSDGLDDDQVTLLEESRREGHEVVRRKGRGRAYQNIQRRAQQEAPQFERNIEAIKFKISKFFGKTDPEEYIQWEKEVEN

Query:  VFACHNFTNEQKVRFCVFKFKDYAQT
        VF CHNFT+EQKVRF V K KDYAQT
Subjt:  VFACHNFTNEQKVRFCVFKFKDYAQT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCACCTCCTCAAGCACCACCTATGGTAATTAACCACAATGATAACCAAGATGAGGGTGATGGTTCTGATGGCTTAGACGATGACCAAGTTACATTATTGGAGGAGTC
GAGACGTGAGGGACATGAAGTAGTTAGAAGAAAAGGTCGTGGGAGAGCTTATCAAAATATCCAAAGGAGAGCTCAACAAGAAGCACCTCAATTTGAGCGTAACATAGAAG
CCATCAAATTTAAAATTTCCAAGTTCTTCGGGAAAACTGATCCAGAGGAGTACATTCAGTGGGAAAAAGAGGTGGAGAATGTGTTTGCTTGCCATAATTTTACTAACGAG
CAGAAGGTTAGATTTTGTGTTTTCAAATTTAAGGATTATGCTCAAACTAGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCACCTCCTCAAGCACCACCTATGGTAATTAACCACAATGATAACCAAGATGAGGGTGATGGTTCTGATGGCTTAGACGATGACCAAGTTACATTATTGGAGGAGTC
GAGACGTGAGGGACATGAAGTAGTTAGAAGAAAAGGTCGTGGGAGAGCTTATCAAAATATCCAAAGGAGAGCTCAACAAGAAGCACCTCAATTTGAGCGTAACATAGAAG
CCATCAAATTTAAAATTTCCAAGTTCTTCGGGAAAACTGATCCAGAGGAGTACATTCAGTGGGAAAAAGAGGTGGAGAATGTGTTTGCTTGCCATAATTTTACTAACGAG
CAGAAGGTTAGATTTTGTGTTTTCAAATTTAAGGATTATGCTCAAACTAGGTGA
Protein sequenceShow/hide protein sequence
MPPPQAPPMVINHNDNQDEGDGSDGLDDDQVTLLEESRREGHEVVRRKGRGRAYQNIQRRAQQEAPQFERNIEAIKFKISKFFGKTDPEEYIQWEKEVENVFACHNFTNE
QKVRFCVFKFKDYAQTR