CuGenDBv2

Gene ID	IVF0014867
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	sigma factor binding protein 2, chloroplastic
Genome location	chr08:10265181..10266016
RNA-Seq Expression	IVF0014867
Synteny	IVF0014867
Gene Ontology terms	GO:0051091 - positive regulation of DNA-binding transcription factor activity (biological process)
InterPro domains	IPR008889 - VQ IPR039335 - Sigma factor binding protein 1/2

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0025974.1 sigma factor binding protein 2 [Cucumis melo var. makuwa]

1.10e-108

98.78

Show/hide

Query:  MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKLPPSAVCDDAASTDQLYNTVSGGGDD
        MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSK PPSAVCDDAASTDQLYNTVSGGGDD
Subjt:  MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKLPPSAVCDDAASTDQLYNTVSGGGDD

Query:  DGASNLIVNSNNPSLVDDVPAEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPVAAVVYESNAR
        DGASNLIVNSNNPSLVDDVPAEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGP+AAVVYESNAR
Subjt:  DGASNLIVNSNNPSLVDDVPAEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPVAAVVYESNAR

KAE8649682.1 hypothetical protein Csa_012221 [Cucumis sativus]

1.67e-92

86.59

Show/hide

Query:  MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKLPPSAVCDDAASTDQLYNTVSGGGDD
        MDAG ATG++ RTLDAVYRRKP KKTKQ   +LKKPIKVVYISNPMKVQTSAS FMALVQELTGQDADFPDPSK PPSAVCD AASTDQLYNT+S GG+D
Subjt:  MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKLPPSAVCDDAASTDQLYNTVSGGGDD

Query:  DGASNLIVNSNNPSLVDDVPAEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPVAAVVYESNAR
        DGA+NLIVNSNN SLVD+VPAEDDILGSFYDDFDDLIFP PV+GN SGLLP PVAAVVYESNAR
Subjt:  DGASNLIVNSNNPSLVDDVPAEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPVAAVVYESNAR

TYK04210.1 sigma factor binding protein 2 [Cucumis melo var. makuwa]

9.44e-110

100

Show/hide

Query:  MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKLPPSAVCDDAASTDQLYNTVSGGGDD
        MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKLPPSAVCDDAASTDQLYNTVSGGGDD
Subjt:  MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKLPPSAVCDDAASTDQLYNTVSGGGDD

Query:  DGASNLIVNSNNPSLVDDVPAEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPVAAVVYESNAR
        DGASNLIVNSNNPSLVDDVPAEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPVAAVVYESNAR
Subjt:  DGASNLIVNSNNPSLVDDVPAEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPVAAVVYESNAR

XP_008455708.1 PREDICTED: sigma factor binding protein 2, chloroplastic [Cucumis melo]

4.74e-121

97.81

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Query:  MFFLTLSPFPLKNPFPPSKMDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKLPPSAVC
        MF LTLSPFPLKNPF PSKMDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSK PPSAVC
Subjt:  MFFLTLSPFPLKNPFPPSKMDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKLPPSAVC

Query:  DDAASTDQLYNTVSGGGDDDGASNLIVNSNNPSLVDDVPAEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPVAAVVYESNAR
        DDAASTDQLYNTVSGGGDDDGASNLIVNSNNPSLVDDVPAEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGP+AAVVYESNAR
Subjt:  DDAASTDQLYNTVSGGGDDDGASNLIVNSNNPSLVDDVPAEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPVAAVVYESNAR

XP_011653858.1 sigma factor binding protein 2, chloroplastic [Cucumis sativus]

1.11e-92

86.59

Show/hide

Query:  MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKLPPSAVCDDAASTDQLYNTVSGGGDD
        MDAG ATG++ RTLDAVYRRKP KKTKQ   +LKKPIKVVYISNPMKVQTSAS FMALVQELTGQDADFPDPSK PPSAVCD AASTDQLYNT+S GG+D
Subjt:  MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKLPPSAVCDDAASTDQLYNTVSGGGDD

Query:  DGASNLIVNSNNPSLVDDVPAEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPVAAVVYESNAR
        DGA+NLIVNSNN SLVD+VPAEDDILGSFYDDFDDLIFP PV+GN SGLLP PVAAVVYESNAR
Subjt:  DGASNLIVNSNNPSLVDDVPAEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPVAAVVYESNAR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L3J8 VQ domain-containing protein

2.0e-71

86.59

Show/hide

Query:  MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKLPPSAVCDDAASTDQLYNTVSGGGDD
        MDAG ATG++ RTLDAVYRRKP KKTKQ   +LKKPIKVVYISNPMKVQTSAS FMALVQELTGQDADFPDPSK PPSAVCD AASTDQLYNT+S GG+D
Subjt:  MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKLPPSAVCDDAASTDQLYNTVSGGGDD

Query:  DGASNLIVNSNNPSLVDDVPAEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPVAAVVYESNAR
        DGA+NLIVNSNN SLVD+VPAEDDILGSFYDDFDDLIFP PV+GN SGLLP PVAAVVYESNAR
Subjt:  DGASNLIVNSNNPSLVDDVPAEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPVAAVVYESNAR

A0A1S3C276 sigma factor binding protein 2, chloroplastic

1.9e-93

97.81

Show/hide

Query:  MFFLTLSPFPLKNPFPPSKMDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKLPPSAVC
        MF LTLSPFPLKNPF PSKMDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSK PPSAVC
Subjt:  MFFLTLSPFPLKNPFPPSKMDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKLPPSAVC

Query:  DDAASTDQLYNTVSGGGDDDGASNLIVNSNNPSLVDDVPAEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPVAAVVYESNAR
        DDAASTDQLYNTVSGGGDDDGASNLIVNSNNPSLVDDVPAEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGP+AAVVYESNAR
Subjt:  DDAASTDQLYNTVSGGGDDDGASNLIVNSNNPSLVDDVPAEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPVAAVVYESNAR

A0A5A7SJV9 Sigma factor binding protein 2

1.4e-83

98.78

Show/hide

Query:  MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKLPPSAVCDDAASTDQLYNTVSGGGDD
        MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSK PPSAVCDDAASTDQLYNTVSGGGDD
Subjt:  MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKLPPSAVCDDAASTDQLYNTVSGGGDD

Query:  DGASNLIVNSNNPSLVDDVPAEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPVAAVVYESNAR
        DGASNLIVNSNNPSLVDDVPAEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGP+AAVVYESNAR
Subjt:  DGASNLIVNSNNPSLVDDVPAEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPVAAVVYESNAR

A0A5D3BYM2 Sigma factor binding protein 2

2.1e-84

100

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Query:  MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKLPPSAVCDDAASTDQLYNTVSGGGDD
        MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKLPPSAVCDDAASTDQLYNTVSGGGDD
Subjt:  MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKLPPSAVCDDAASTDQLYNTVSGGGDD

Query:  DGASNLIVNSNNPSLVDDVPAEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPVAAVVYESNAR
        DGASNLIVNSNNPSLVDDVPAEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPVAAVVYESNAR
Subjt:  DGASNLIVNSNNPSLVDDVPAEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPVAAVVYESNAR

A0A6J1EY87 sigma factor binding protein 2, chloroplastic-like

5.8e-42

64.02

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Query:  AGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKLPPSAVCDDAASTDQLYNTVSGGGDDDG
        AG  TGN+ R LD V+RRKP KKTKQ NK   KPIKVVYISNPMKVQ SAS FMALVQ+LTGQDADFPDPS  PP+AV D AA  D ++NT +       
Subjt:  AGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKLPPSAVCDDAASTDQLYNTVSGGGDDDG

Query:  ASNLIVNSNNPSLVDDVPAEDD-ILGSFYDDFDDLIFPPPVMGNLSGLLPGPVA-AVVYESNAR
            ++N+NNPSL  ++P EDD  LGSFYDD DDLIFPPPV+GN   LLP   A AV+YES AR
Subjt:  ASNLIVNSNNPSLVDDVPAEDD-ILGSFYDDFDDLIFPPPVMGNLSGLLPGPVA-AVVYESNAR

SwissProt top hits

e value

%identity

Alignment

O80669 Sigma factor binding protein 2, chloroplastic

2.2e-06

34.04

Show/hide

Query:  KTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKLPPSAVCDDAASTDQLYNTVSGGGDDDGASNLIVNSNNP--SLVDDVPAE
        K K+ +    KPIKV YISNPM+V+T  S+F  LVQELTGQDA     + LPPS     A                       V+ + P  S ++  P +
Subjt:  KTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKLPPSAVCDDAASTDQLYNTVSGGGDDDGASNLIVNSNNP--SLVDDVPAE

Query:  DDILGSFYDDFDDLIFPPPVMGNLSGLLPGPVAAVVYESNA
         ++ G +Y   D+ +F  P M   S  L G  ++  Y  NA
Subjt:  DDILGSFYDDFDDLIFPPPVMGNLSGLLPGPVAAVVYESNA

Q9LDH1 Sigma factor binding protein 1, chloroplastic

4.4e-07

47.67

Show/hide

Query:  MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLK------KPIKVVYISNPMKVQTSASEFMALVQELTGQDA-DF-PDPSKLPPS
        M++ ++T     +LD   ++KP+  +++S K+ K      KPIKV YISNPM+VQT AS+F  LVQELTGQDA D  P+P   P S
Subjt:  MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLK------KPIKVVYISNPMKVQTSASEFMALVQELTGQDA-DF-PDPSKLPPS

Arabidopsis top hits

e value

%identity

Alignment

AT2G41180.1 VQ motif-containing protein

1.6e-07

34.04

Show/hide

Query:  KTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKLPPSAVCDDAASTDQLYNTVSGGGDDDGASNLIVNSNNP--SLVDDVPAE
        K K+ +    KPIKV YISNPM+V+T  S+F  LVQELTGQDA     + LPPS     A                       V+ + P  S ++  P +
Subjt:  KTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKLPPSAVCDDAASTDQLYNTVSGGGDDDGASNLIVNSNNP--SLVDDVPAE

Query:  DDILGSFYDDFDDLIFPPPVMGNLSGLLPGPVAAVVYESNA
         ++ G +Y   D+ +F  P M   S  L G  ++  Y  NA
Subjt:  DDILGSFYDDFDDLIFPPPVMGNLSGLLPGPVAAVVYESNA

AT3G56710.1 sigma factor binding protein 1

3.1e-08

47.67

Show/hide

Query:  MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLK------KPIKVVYISNPMKVQTSASEFMALVQELTGQDA-DF-PDPSKLPPS
        M++ ++T     +LD   ++KP+  +++S K+ K      KPIKV YISNPM+VQT AS+F  LVQELTGQDA D  P+P   P S
Subjt:  MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLK------KPIKVVYISNPMKVQTSASEFMALVQELTGQDA-DF-PDPSKLPPS

Sequences

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CDS sequence

Show/hide CDS sequence

ATGTTTTTCCTCACTCTCTCTCCTTTCCCCCTAAAAAACCCTTTTCCCCCTTCCAAAATGGACGCCGGCGCCGCCACCGGAAACAACCCCCGAACTCTCGACGCCGTTTA
CCGGCGTAAACCTGCCAAGAAAACAAAACAATCCAACAAGAAATTAAAAAAACCCATCAAAGTTGTGTACATATCCAACCCCATGAAAGTTCAAACCAGTGCTTCTGAAT
TCATGGCTTTGGTCCAAGAACTCACCGGCCAAGACGCTGACTTTCCTGACCCCTCTAAACTCCCCCCATCCGCGGTATGCGACGACGCCGCCTCCACCGACCAACTCTAC
AACACGGTATCAGGTGGCGGTGACGACGACGGTGCTAGTAATCTTATTGTGAATAGTAACAACCCTTCACTTGTTGACGACGTGCCGGCGGAGGACGACATTCTCGGTAG
CTTTTATGACGACTTTGACGACTTGATTTTTCCTCCTCCGGTAATGGGAAACTTATCTGGGTTGCTTCCGGGTCCCGTGGCAGCGGTTGTCTATGAATCTAATGCAAGGT
GA

mRNA sequence

Show/hide mRNA sequence

ATACGCTCCTTGTCGGCGCTTGGCTTCCTCTCTCCCAATTAAATTCTTGTCGGTTTCTTCCCTCTCCTAATCCCTATGTTTTTCCTCACTCTCTCTCCTTTCCCCCTAAA
AAACCCTTTTCCCCCTTCCAAAATGGACGCCGGCGCCGCCACCGGAAACAACCCCCGAACTCTCGACGCCGTTTACCGGCGTAAACCTGCCAAGAAAACAAAACAATCCA
ACAAGAAATTAAAAAAACCCATCAAAGTTGTGTACATATCCAACCCCATGAAAGTTCAAACCAGTGCTTCTGAATTCATGGCTTTGGTCCAAGAACTCACCGGCCAAGAC
GCTGACTTTCCTGACCCCTCTAAACTCCCCCCATCCGCGGTATGCGACGACGCCGCCTCCACCGACCAACTCTACAACACGGTATCAGGTGGCGGTGACGACGACGGTGC
TAGTAATCTTATTGTGAATAGTAACAACCCTTCACTTGTTGACGACGTGCCGGCGGAGGACGACATTCTCGGTAGCTTTTATGACGACTTTGACGACTTGATTTTTCCTC
CTCCGGTAATGGGAAACTTATCTGGGTTGCTTCCGGGTCCCGTGGCAGCGGTTGTCTATGAATCTAATGCAAGGTGAAAATATTTTTTGATATTATAATGTGTGAAAGAT
CCTTGTATCTCTTTAATTTTATCTTCCATTTTTCTATAAGCTTTTTTAATGAACATGTATAATTGTATATTAATTGGGGAGTAATCGTTAACTTGTGAAAAAAATATCAA
GGTATCAAATTTATGATAAAAAGATGTTTTAATAAATTAAAAGGAATATGTGGATATTTTAATTTA

Protein sequence

Show/hide protein sequence

MFFLTLSPFPLKNPFPPSKMDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKLPPSAVCDDAASTDQLY
NTVSGGGDDDGASNLIVNSNNPSLVDDVPAEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPVAAVVYESNAR

IVF0014867 (gene) of Melon (IVF77) v1 genome