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IVF0014872 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0014872
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr11:6508179..6508444
RNA-Seq ExpressionIVF0014872
SyntenyIVF0014872
Gene Ontology termsGO:0090481 - pyrimidine nucleotide-sugar transmembrane transport (biological process)
GO:0000139 - Golgi membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0015165 - pyrimidine nucleotide-sugar transmembrane transporter activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037133.1 retrotransposon protein [Cucumis melo var. makuwa]4.32e-0682.14Show/hide
Query:  IWVSSSWVSFVEKKGRGDEKNGVKVGIL
        IWVSS WVS  EKKGRGDEKNGVKVG+ 
Subjt:  IWVSSSWVSFVEKKGRGDEKNGVKVGIL
KAA0048509.1 CMP-sialic acid transporter 4 isoform X2 [Cucumis melo var. makuwa]7.40e-1480.49Show/hide
Query:  RNEKRKIKNSPTMIWVSSSWVSFVEKKGRGDEKNGVKVGIL
        RNEKRKIKNSP  IWVSS WVS  EKKGRGDEKNGVKV + 
Subjt:  RNEKRKIKNSPTMIWVSSSWVSFVEKKGRGDEKNGVKVGIL
KAA0054034.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.58e-0756Show/hide
Query:  MIWVSSSWVSFVEKKGRGDEKNGVKVG-------------ILKKESEVCV
        M+WVSS WVS ++KKGRGDEKNG KVG             ILKKE+ VC+
Subjt:  MIWVSSSWVSFVEKKGRGDEKNGVKVG-------------ILKKESEVCV
TYJ96889.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]3.09e-0672.41Show/hide
Query:  MIWVSSSWVSFVEKKGRGDEKNGVKVGIL
        M+WVSS WVS ++KKGRGDEKNG KVG+ 
Subjt:  MIWVSSSWVSFVEKKGRGDEKNGVKVGIL
TYK21269.1 thioredoxin H1-like isoform X1 [Cucumis melo var. makuwa]6.25e-1057.38Show/hide
Query:  MGTQETE--------------RNEKRKIKNSPTMIWVSSSWVSFVEKKGRGDEKNGVKVGI
        MGTQETE              RNEKRKIKNS   IWVSS WVS  +KK  GDEKNGVK+ +
Subjt:  MGTQETE--------------RNEKRKIKNSPTMIWVSSSWVSFVEKKGRGDEKNGVKVGI
TrEMBL top hitse value%identityAlignment
A0A5A7T2E4 Retrotransposon protein8.1e-0462.22Show/hide
Query:  IWVSSSWVSFVEKKGRGDEKNGVKVGILKKESEVCV-----KKER
        IWVSS WVS  EKKGRGDEKNGVKVG+      + V     KKER
Subjt:  IWVSSSWVSFVEKKGRGDEKNGVKVGILKKESEVCV-----KKER
A0A5A7U4Z1 CMP-sialic acid transporter 4 isoform X29.9e-1072.92Show/hide
Query:  RNEKRKIKNSPTMIWVSSSWVSFVEKKGRGDEKNGVKVGILKKESEVC
        RNEKRKIKNSP  IWVSS WVS  EKKGRGDEKNGVKV +    S  C
Subjt:  RNEKRKIKNSPTMIWVSSSWVSFVEKKGRGDEKNGVKVGILKKESEVC
A0A5A7UFR0 Ty3-gypsy retrotransposon protein4.3e-0554.9Show/hide
Query:  MIWVSSSWVSFVEKKGRGDEKNGVKV-------------GILKKESEVCVK
        M+WVSS WVS ++KKGRGDEKNG KV             GILKKE+ VC++
Subjt:  MIWVSSSWVSFVEKKGRGDEKNGVKV-------------GILKKESEVCVK
A0A5D3BCV7 Ty3-gypsy retrotransposon protein4.8e-0453.7Show/hide
Query:  MIWVSSSWVSFVEKKGRGDEKNGVKV-------------GILKKESEVCVKKER
        M+WVSS WVS ++KKGRGDEKNG KV             GILKKE+ V   KE+
Subjt:  MIWVSSSWVSFVEKKGRGDEKNGVKV-------------GILKKESEVCVKKER
A0A5D3DDC9 Thioredoxin H1-like isoform X13.0e-0659.32Show/hide
Query:  MGTQETE--------------RNEKRKIKNSPTMIWVSSSWVSFVEKKGRGDEKNGVKV
        MGTQETE              RNEKRKIKNS   IWVSS WVS  +KK  GDEKNGVK+
Subjt:  MGTQETE--------------RNEKRKIKNSPTMIWVSSSWVSFVEKKGRGDEKNGVKV
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAACACAAGAAACAGAAAGAAACGAAAAAAGAAAGATCAAGAACTCACCGACAATGATATGGGTCTCCTCGTCATGGGTCTCCTTTGTCGAGAAGAAAGGACGTGG
AGATGAGAAGAATGGGGTTAAGGTTGGGATTTTGAAGAAGGAAAGTGAAGTGTGCGTGAAGAAGGAAAGGGAGGGGTTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGAACACAAGAAACAGAAAGAAACGAAAAAAGAAAGATCAAGAACTCACCGACAATGATATGGGTCTCCTCGTCATGGGTCTCCTTTGTCGAGAAGAAAGGACGTGG
AGATGAGAAGAATGGGGTTAAGGTTGGGATTTTGAAGAAGGAAAGTGAAGTGTGCGTGAAGAAGGAAAGGGAGGGGTTTTGA
Protein sequenceShow/hide protein sequence
MGTQETERNEKRKIKNSPTMIWVSSSWVSFVEKKGRGDEKNGVKVGILKKESEVCVKKEREGF