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IVF0014907 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0014907
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon 17.6
Genome locationchr02:10121602..10122162
RNA-Seq ExpressionIVF0014907
SyntenyIVF0014907
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040567.1 hypothetical protein E6C27_scaffold262G001370 [Cucumis melo var. makuwa]1.03e-4259.75Show/hide
Query:  INPPIINLDLEHIDLNFLIVNLSEGD-----------IVDLELPLTIYDSLFQDILVEKDAGDTSSEEEAQ------LEKEVELLNVLHNVIMDPMNVTF
        IN  IINLDLEHIDLN  +VNLSE +           IVD  LPL +YD  FQDI +++DAG TSS+EEAQ       EKEVE  +VL+NVI++ MN  F
Subjt:  INPPIINLDLEHIDLNFLIVNLSEGD-----------IVDLELPLTIYDSLFQDILVEKDAGDTSSEEEAQ------LEKEVELLNVLHNVIMDPMNVTF

Query:  KEMLLENVVMKDQIASLNTQVYGLEATVSTLNSTVVQLSSTLTNLTSLMMAHSNQSRHI
         E+ L+NV  KDQI +LN QV  LEA VS LNSTVVQLS  L NLTSLM+AHSNQS HI
Subjt:  KEMLLENVVMKDQIASLNTQVYGLEATVSTLNSTVVQLSSTLTNLTSLMMAHSNQSRHI

KAA0041154.1 hypothetical protein E6C27_scaffold128G00750 [Cucumis melo var. makuwa]5.42e-2867.96Show/hide
Query:  LSEGDIVDLELPLTIYDSLFQDILVEKDAGDTSSEEEAQLE------KEVELLNVLHNVIMDPMNVTFKEMLLENVVMKDQIASLNTQVYGLEATVSTLN
        + +  IVDL+L LTIYD LFQDILVE+DAG+TS EEEAQ +      KEVE  +VLHNVI   M  T KE LLEN+VMKDQIASLNTQV GLEATVS LN
Subjt:  LSEGDIVDLELPLTIYDSLFQDILVEKDAGDTSSEEEAQLE------KEVELLNVLHNVIMDPMNVTFKEMLLENVVMKDQIASLNTQVYGLEATVSTLN

Query:  STV
        S V
Subjt:  STV

KAA0063129.1 hypothetical protein E6C27_scaffold381G00030 [Cucumis melo var. makuwa]9.49e-3056.59Show/hide
Query:  PSHAPINPPIINLDLEHIDLNFLIVNLSEGDIVDLELPLTIYDSLFQDILVEKDAGDTSSEEEAQLEKEV------ELLNVLHNVIMDPMNVTFKEMLLE
        PSH PIN   INLD EHIDLN ++VN                   F  I VE+D G TSS+EEAQLEKEV      EL +V+HNVI +PMN  FKE+LLE
Subjt:  PSHAPINPPIINLDLEHIDLNFLIVNLSEGDIVDLELPLTIYDSLFQDILVEKDAGDTSSEEEAQLEKEV------ELLNVLHNVIMDPMNVTFKEMLLE

Query:  NVVMKDQIASLNTQVYGLEATVSTLNSTV
        NV  KDQ+ SLNT+V GLEA VSTLNS V
Subjt:  NVVMKDQIASLNTQVYGLEATVSTLNSTV

TYJ97037.1 pol [Cucumis melo var. makuwa]3.70e-8797.95Show/hide
Query:  SEGDIVDLELPLTIYDSLFQDILVEKDAGDTSSEEEAQLEKEVELLNVLHNVIMDPMNVTFKEMLLENVVMKDQIASLNTQVYGLEATVSTLNSTVVQLS
         E +IVDLELPLTIYDSLFQDILVEKDAGDTSSEEEAQLEKEVELLNVLHNVIMDPMNVTFKEMLLENVVMKDQIASLNTQVYGLEATVSTLNSTVVQLS
Subjt:  SEGDIVDLELPLTIYDSLFQDILVEKDAGDTSSEEEAQLEKEVELLNVLHNVIMDPMNVTFKEMLLENVVMKDQIASLNTQVYGLEATVSTLNSTVVQLS

Query:  STLTNLTSLMMAHSNQSRHIVDRHDKWNICTWCLYSVFPSLSSHLS
        STLTNLTSLMMAHSNQSRHIVDRHDKWNICTWCLYSVFPSLSSHLS
Subjt:  STLTNLTSLMMAHSNQSRHIVDRHDKWNICTWCLYSVFPSLSSHLS

TYK05894.1 hypothetical protein E5676_scaffold1085G00020 [Cucumis melo var. makuwa]5.06e-4065.65Show/hide
Query:  SEGDIVDLELPLTIYDSLFQDILVEKDAGDTSSEEEAQLE------KEVELLNVLHNVIMDPMNVTFKEMLLENVVMKDQIASLNTQVYGLEATVSTLNS
         E +IVD ELPLT+YD LFQDI +E+DAG+ SS+EEAQLE      KEVE  NVLHNVI   MN  FKE++LENV MKDQI +  TQ+ GLEATVSTLNS
Subjt:  SEGDIVDLELPLTIYDSLFQDILVEKDAGDTSSEEEAQLE------KEVELLNVLHNVIMDPMNVTFKEMLLENVVMKDQIASLNTQVYGLEATVSTLNS

Query:  TVVQLSSTLTNLTSLMMAHSNQSRHIVDRHD
         V QLSS LT+LTSLM+A+SNQS HI ++H+
Subjt:  TVVQLSSTLTNLTSLMMAHSNQSRHIVDRHD

TrEMBL top hitse value%identityAlignment
A0A5A7TCG4 Uncharacterized protein2.2e-2271.43Show/hide
Query:  IVDLELPLTIYDSLFQDILVEKDAGDTSSEEEAQLE------KEVELLNVLHNVIMDPMNVTFKEMLLENVVMKDQIASLNTQVYGLEATVSTLNSTV
        IVDL+L LTIYD LFQDILVE+DAG+TS EEEAQ +      KEVE  +VLHNVI   M  T KE LLEN+VMKDQIASLNTQV GLEATVS LNS V
Subjt:  IVDLELPLTIYDSLFQDILVEKDAGDTSSEEEAQLE------KEVELLNVLHNVIMDPMNVTFKEMLLENVVMKDQIASLNTQVYGLEATVSTLNSTV

A0A5A7VBZ9 Uncharacterized protein1.5e-2356.59Show/hide
Query:  PSHAPINPPIINLDLEHIDLNFLIVNLSEGDIVDLELPLTIYDSLFQDILVEKDAGDTSSEEEAQL------EKEVELLNVLHNVIMDPMNVTFKEMLLE
        PSH PIN   INLD EHIDLN ++VN                   F  I VE+D G TSS+EEAQL      EKEVEL +V+HNVI +PMN  FKE+LLE
Subjt:  PSHAPINPPIINLDLEHIDLNFLIVNLSEGDIVDLELPLTIYDSLFQDILVEKDAGDTSSEEEAQL------EKEVELLNVLHNVIMDPMNVTFKEMLLE

Query:  NVVMKDQIASLNTQVYGLEATVSTLNSTV
        NV  KDQ+ SLNT+V GLEA VSTLNS V
Subjt:  NVVMKDQIASLNTQVYGLEATVSTLNSTV

A0A5D3BD35 Pol3.7e-7097.28Show/hide
Query:  LSEGDIVDLELPLTIYDSLFQDILVEKDAGDTSSEEEAQLEKEVELLNVLHNVIMDPMNVTFKEMLLENVVMKDQIASLNTQVYGLEATVSTLNSTVVQL
        + E +IVDLELPLTIYDSLFQDILVEKDAGDTSSEEEAQLEKEVELLNVLHNVIMDPMNVTFKEMLLENVVMKDQIASLNTQVYGLEATVSTLNSTVVQL
Subjt:  LSEGDIVDLELPLTIYDSLFQDILVEKDAGDTSSEEEAQLEKEVELLNVLHNVIMDPMNVTFKEMLLENVVMKDQIASLNTQVYGLEATVSTLNSTVVQL

Query:  SSTLTNLTSLMMAHSNQSRHIVDRHDKWNICTWCLYSVFPSLSSHLS
        SSTLTNLTSLMMAHSNQSRHIVDRHDKWNICTWCLYSVFPSLSSHLS
Subjt:  SSTLTNLTSLMMAHSNQSRHIVDRHDKWNICTWCLYSVFPSLSSHLS

A0A5D3C2N8 Uncharacterized protein1.6e-3359.75Show/hide
Query:  INPPIINLDLEHIDLNFLIVNLSEG-----------DIVDLELPLTIYDSLFQDILVEKDAGDTSSEEEAQ------LEKEVELLNVLHNVIMDPMNVTF
        IN  IINLDLEHIDLN  +VNLSE            +IVD  LPL +YD  FQDI +++DAG TSS+EEAQ       EKEVE  +VL+NVI++ MN  F
Subjt:  INPPIINLDLEHIDLNFLIVNLSEG-----------DIVDLELPLTIYDSLFQDILVEKDAGDTSSEEEAQ------LEKEVELLNVLHNVIMDPMNVTF

Query:  KEMLLENVVMKDQIASLNTQVYGLEATVSTLNSTVVQLSSTLTNLTSLMMAHSNQSRHI
         E+ L+NV  KDQI +LN QV  LEA VS LNSTVVQLS  L NLTSLM+AHSNQS HI
Subjt:  KEMLLENVVMKDQIASLNTQVYGLEATVSTLNSTVVQLSSTLTNLTSLMMAHSNQSRHI

A0A5D3C3K8 Uncharacterized protein1.5e-3166.15Show/hide
Query:  EGDIVDLELPLTIYDSLFQDILVEKDAGDTSSEEEAQL------EKEVELLNVLHNVIMDPMNVTFKEMLLENVVMKDQIASLNTQVYGLEATVSTLNST
        E +IVD ELPLT+YD LFQDI +E+DAG+ SS+EEAQL      EKEVE  NVLHNVI   MN  FKE++LENV MKDQI +  TQ+ GLEATVSTLNS 
Subjt:  EGDIVDLELPLTIYDSLFQDILVEKDAGDTSSEEEAQL------EKEVELLNVLHNVIMDPMNVTFKEMLLENVVMKDQIASLNTQVYGLEATVSTLNST

Query:  VVQLSSTLTNLTSLMMAHSNQSRHIVDRHD
        V QLSS LT+LTSLM+A+SNQS HI ++H+
Subjt:  VVQLSSTLTNLTSLMMAHSNQSRHIVDRHD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCACCTAGCCATGCGCCCATAAACCCACCCATCATTAACTTGGACCTTGAGCATATTGATTTAAATTTTCTCATTGTGAATTTGTCTGAAGGGGATATAGTCGACCT
TGAGCTTCCTTTGACCATTTATGACTCACTCTTCCAAGACATCCTTGTAGAGAAAGATGCAGGAGACACGAGTTCAGAGGAAGAAGCACAACTAGAGAAAGAAGTTGAAC
TTCTCAATGTACTTCACAATGTCATCATGGATCCTATGAACGTCACTTTTAAAGAAATGCTCTTGGAGAACGTGGTGATGAAGGATCAAATCGCCAGCCTTAACACTCAG
GTGTATGGATTAGAAGCCACAGTCTCCACCCTCAACTCCACGGTCGTACAACTCTCCTCTACCTTGACTAACTTAACCAGTTTGATGATGGCCCACTCCAACCAGTCGCG
TCACATTGTAGACCGGCACGACAAATGGAATATATGCACATGGTGTTTGTACAGCGTGTTCCCTAGCCTATCATCGCACCTGAGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCACCTAGCCATGCGCCCATAAACCCACCCATCATTAACTTGGACCTTGAGCATATTGATTTAAATTTTCTCATTGTGAATTTGTCTGAAGGGGATATAGTCGACCT
TGAGCTTCCTTTGACCATTTATGACTCACTCTTCCAAGACATCCTTGTAGAGAAAGATGCAGGAGACACGAGTTCAGAGGAAGAAGCACAACTAGAGAAAGAAGTTGAAC
TTCTCAATGTACTTCACAATGTCATCATGGATCCTATGAACGTCACTTTTAAAGAAATGCTCTTGGAGAACGTGGTGATGAAGGATCAAATCGCCAGCCTTAACACTCAG
GTGTATGGATTAGAAGCCACAGTCTCCACCCTCAACTCCACGGTCGTACAACTCTCCTCTACCTTGACTAACTTAACCAGTTTGATGATGGCCCACTCCAACCAGTCGCG
TCACATTGTAGACCGGCACGACAAATGGAATATATGCACATGGTGTTTGTACAGCGTGTTCCCTAGCCTATCATCGCACCTGAGTTGA
Protein sequenceShow/hide protein sequence
MPPSHAPINPPIINLDLEHIDLNFLIVNLSEGDIVDLELPLTIYDSLFQDILVEKDAGDTSSEEEAQLEKEVELLNVLHNVIMDPMNVTFKEMLLENVVMKDQIASLNTQ
VYGLEATVSTLNSTVVQLSSTLTNLTSLMMAHSNQSRHIVDRHDKWNICTWCLYSVFPSLSSHLS