CuGenDBv2

Gene ID	IVF0014981
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	pentatricopeptide repeat-containing protein At1g06270
Genome location	chr11:26766880..26767604
RNA-Seq Expression	IVF0014981
Synteny	IVF0014981
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0063642.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]

2.23e-63

76.05

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Query:  LISSLYSIGELAEAFQVLK--------------------ATAVRLADKAVELLKEMVVKVKLMPRQGTIINVVAALRANREVRRAVEIIEL---------
        LISSL SIGELAEAFQVLK                    ATAVR  DKAVELLKEMVVKVKLMPRQ TIINVVAALRANREVRRAVEIIEL         
Subjt:  LISSLYSIGELAEAFQVLK--------------------ATAVRLADKAVELLKEMVVKVKLMPRQGTIINVVAALRANREVRRAVEIIEL---------

Query:  ---YELLVEGCLECREYILAGKVTMGMTDRGFIPYIKVRQKVVEGLAGIGEVELASAVRRRFVELGS
           YELLVEGCLECREYILAGKV M MTDRGFIPYIKVRQKVVEGL GIGE+ELASAVRRRFVELGS
Subjt:  ---YELLVEGCLECREYILAGKVTMGMTDRGFIPYIKVRQKVVEGLAGIGEVELASAVRRRFVELGS

XP_004139374.1 pentatricopeptide repeat-containing protein At1g06270 [Cucumis sativus]

8.62e-66

77.25

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Query:  LISSLYSIGELAEAFQVLK--------------------ATAVRLADKAVELLKEMVVKVKLMPRQGTIINVVAALRANREVRRAVEIIEL---------
        LISSL SIGELAEAFQVLK                    ATAVR  DKAVELLKEMVVKVKLMPRQGTI NVVAALR NREVRRAVEIIEL         
Subjt:  LISSLYSIGELAEAFQVLK--------------------ATAVRLADKAVELLKEMVVKVKLMPRQGTIINVVAALRANREVRRAVEIIEL---------

Query:  ---YELLVEGCLECREYILAGKVTMGMTDRGFIPYIKVRQKVVEGLAGIGEVELASAVRRRFVELGS
           YELLVEGCLECREYILAGKVTMGMTDRGFIPYIKVRQ+VVEGLAGIGEVELASAVRRRFVELGS
Subjt:  ---YELLVEGCLECREYILAGKVTMGMTDRGFIPYIKVRQKVVEGLAGIGEVELASAVRRRFVELGS

XP_008455557.1 PREDICTED: pentatricopeptide repeat-containing protein At1g06270 [Cucumis melo]

2.23e-63

76.05

Show/hide

Query:  LISSLYSIGELAEAFQVLK--------------------ATAVRLADKAVELLKEMVVKVKLMPRQGTIINVVAALRANREVRRAVEIIEL---------
        LISSL SIGELAEAFQVLK                    ATAVR  DKAVELLKEMVVKVKLMPRQ TIINVVAALRANREVRRAVEIIEL         
Subjt:  LISSLYSIGELAEAFQVLK--------------------ATAVRLADKAVELLKEMVVKVKLMPRQGTIINVVAALRANREVRRAVEIIEL---------

Query:  ---YELLVEGCLECREYILAGKVTMGMTDRGFIPYIKVRQKVVEGLAGIGEVELASAVRRRFVELGS
           YELLVEGCLECREYILAGKV M MTDRGFIPYIKVRQKVVEGL GIGE+ELASAVRRRFVELGS
Subjt:  ---YELLVEGCLECREYILAGKVTMGMTDRGFIPYIKVRQKVVEGLAGIGEVELASAVRRRFVELGS

XP_022947166.1 pentatricopeptide repeat-containing protein At1g06270 [Cucurbita moschata]

1.32e-56

68.26

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Query:  LISSLYSIGELAEAFQVLK--------------------ATAVRLADKAVELLKEMVVKVKLMPRQGTIINVVAALRANREVRRAVEIIEL---------
        LISSL +I ELAEAFQVLK                    +TAVR   +AVELLKEMVVKVKL PRQGT+INVVAALRANRE+RRAVEIIEL         
Subjt:  LISSLYSIGELAEAFQVLK--------------------ATAVRLADKAVELLKEMVVKVKLMPRQGTIINVVAALRANREVRRAVEIIEL---------

Query:  ---YELLVEGCLECREYILAGKVTMGMTDRGFIPYIKVRQKVVEGLAGIGEVELASAVRRRFVELGS
           YE+LVEGCLECREYILAGKV MGMT++G+IPYI+VR KVVEGLAGIGE ELASAVRRRF EL S
Subjt:  ---YELLVEGCLECREYILAGKVTMGMTDRGFIPYIKVRQKVVEGLAGIGEVELASAVRRRFVELGS

XP_038902935.1 pentatricopeptide repeat-containing protein At1g06270 [Benincasa hispida]

2.30e-58

71.26

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Query:  LISSLYSIGELAEAFQVLKA--------------------TAVRLADKAVELLKEMVVKVKLMPRQGTIINVVAALRANREVRRAVEIIEL---------
        +ISSL +  ELAEAFQVLK                     TAVR  DKAVELLKEMV+KVKL PRQGTIINVVAALRANREVRRAVEIIEL         
Subjt:  LISSLYSIGELAEAFQVLKA--------------------TAVRLADKAVELLKEMVVKVKLMPRQGTIINVVAALRANREVRRAVEIIEL---------

Query:  ---YELLVEGCLECREYILAGKVTMGMTDRGFIPYIKVRQKVVEGLAGIGEVELASAVRRRFVELGS
           YELLVEGCLECREYILAGKVTMGMT+RGFIPYIKVRQKVVEGLAGIGE E ASAVRR+FV L S
Subjt:  ---YELLVEGCLECREYILAGKVTMGMTDRGFIPYIKVRQKVVEGLAGIGEVELASAVRRRFVELGS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LFL3 Uncharacterized protein

2.5e-52

77.25

Show/hide

Query:  LISSLYSIGELAEAFQVLK--------------------ATAVRLADKAVELLKEMVVKVKLMPRQGTIINVVAALRANREVRRAVEIIEL---------
        LISSL SIGELAEAFQVLK                    ATAVR  DKAVELLKEMVVKVKLMPRQGTI NVVAALR NREVRRAVEIIEL         
Subjt:  LISSLYSIGELAEAFQVLK--------------------ATAVRLADKAVELLKEMVVKVKLMPRQGTIINVVAALRANREVRRAVEIIEL---------

Query:  ---YELLVEGCLECREYILAGKVTMGMTDRGFIPYIKVRQKVVEGLAGIGEVELASAVRRRFVELGS
           YELLVEGCLECREYILAGKVTMGMTDRGFIPYIKVRQ+VVEGLAGIGEVELASAVRRRFVELGS
Subjt:  ---YELLVEGCLECREYILAGKVTMGMTDRGFIPYIKVRQKVVEGLAGIGEVELASAVRRRFVELGS

A0A1S3C1B6 pentatricopeptide repeat-containing protein At1g06270

1.8e-50

76.05

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Query:  LISSLYSIGELAEAFQVLK--------------------ATAVRLADKAVELLKEMVVKVKLMPRQGTIINVVAALRANREVRRAVEIIEL---------
        LISSL SIGELAEAFQVLK                    ATAVR  DKAVELLKEMVVKVKLMPRQ TIINVVAALRANREVRRAVEIIEL         
Subjt:  LISSLYSIGELAEAFQVLK--------------------ATAVRLADKAVELLKEMVVKVKLMPRQGTIINVVAALRANREVRRAVEIIEL---------

Query:  ---YELLVEGCLECREYILAGKVTMGMTDRGFIPYIKVRQKVVEGLAGIGEVELASAVRRRFVELGS
           YELLVEGCLECREYILAGKV M MTDRGFIPYIKVRQKVVEGL GIGE+ELASAVRRRFVELGS
Subjt:  ---YELLVEGCLECREYILAGKVTMGMTDRGFIPYIKVRQKVVEGLAGIGEVELASAVRRRFVELGS

A0A5D3D4C7 Pentatricopeptide repeat-containing protein

1.8e-50

76.05

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Query:  LISSLYSIGELAEAFQVLK--------------------ATAVRLADKAVELLKEMVVKVKLMPRQGTIINVVAALRANREVRRAVEIIEL---------
        LISSL SIGELAEAFQVLK                    ATAVR  DKAVELLKEMVVKVKLMPRQ TIINVVAALRANREVRRAVEIIEL         
Subjt:  LISSLYSIGELAEAFQVLK--------------------ATAVRLADKAVELLKEMVVKVKLMPRQGTIINVVAALRANREVRRAVEIIEL---------

Query:  ---YELLVEGCLECREYILAGKVTMGMTDRGFIPYIKVRQKVVEGLAGIGEVELASAVRRRFVELGS
           YELLVEGCLECREYILAGKV M MTDRGFIPYIKVRQKVVEGL GIGE+ELASAVRRRFVELGS
Subjt:  ---YELLVEGCLECREYILAGKVTMGMTDRGFIPYIKVRQKVVEGLAGIGEVELASAVRRRFVELGS

A0A6J1CIR0 pentatricopeptide repeat-containing protein At1g06270

3.8e-45

66.1

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Query:  FQSSRGFSTLLISSLYSIGELAEAFQVLKA--------------------TAVRLADKAVELLKEMVVKVKLMPRQGTIINVVAALRANREVRRAVEIIE
        ++        LISSL +I ELAEA QVLKA                    TAVR   +AVELLKEMVVKVKL PRQGTIINVVAALRANRE+RRAVEIIE
Subjt:  FQSSRGFSTLLISSLYSIGELAEAFQVLKA--------------------TAVRLADKAVELLKEMVVKVKLMPRQGTIINVVAALRANREVRRAVEIIE

Query:  L------------YELLVEGCLECREYILAGKVTMGMTDRGFIPYIKVRQKVVEGLAGIGEVELASAVRRRFVELGS
        L            YELLVEGCL+CREYILAGKV MGMT RGFIPYI+VRQKVVEGLA +GEVELASAVRRRF EL S
Subjt:  L------------YELLVEGCLECREYILAGKVTMGMTDRGFIPYIKVRQKVVEGLAGIGEVELASAVRRRFVELGS

A0A6J1G5M7 pentatricopeptide repeat-containing protein At1g06270

2.9e-45

64.41

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Query:  FQSSRGFSTLLISSLYSIGELAEAFQVLK--------------------ATAVRLADKAVELLKEMVVKVKLMPRQGTIINVVAALRANREVRRAVEIIE
        ++        LISSL +I ELAEAFQVLK                    +TAVR   +AVELLKEMVVKVKL PRQGT+INVVAALRANRE+RRAVEIIE
Subjt:  FQSSRGFSTLLISSLYSIGELAEAFQVLK--------------------ATAVRLADKAVELLKEMVVKVKLMPRQGTIINVVAALRANREVRRAVEIIE

Query:  L------------YELLVEGCLECREYILAGKVTMGMTDRGFIPYIKVRQKVVEGLAGIGEVELASAVRRRFVELGS
        L            YE+LVEGCLECREYILAGKV MGMT++G+IPYI+VR KVVEGLAGIGE ELASAVRRRF EL S
Subjt:  L------------YELLVEGCLECREYILAGKVTMGMTDRGFIPYIKVRQKVVEGLAGIGEVELASAVRRRFVELGS

SwissProt top hits

e value

%identity

Alignment

Q9LNC0 Pentatricopeptide repeat-containing protein At1g06270

6.9e-28

45.2

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Query:  FQSSRGFSTLLISSLYSIGELAEAFQVLKATA--------------------VRLADKAVELLKEMVVKVKLMPRQGTIINVVAALRANREVRRAVEIIE
        +    G    L+SSL ++ +L EA +V++  +                     R     V+++KEMV K  + PR+G +  V AALRANRE+ +A+E+IE
Subjt:  FQSSRGFSTLLISSLYSIGELAEAFQVLKATA--------------------VRLADKAVELLKEMVVKVKLMPRQGTIINVVAALRANREVRRAVEIIE

Query:  L------------YELLVEGCLECREYILAGKVTMGMTDRGFIPYIKVRQKVVEGLAGIGEVELASAVRRRFVELGS
                     YE++VEGCLE REYILAGKV M MTDRGFIPYIKVRQKVVE L  IGE +LA  VR+R  EL S
Subjt:  L------------YELLVEGCLECREYILAGKVTMGMTDRGFIPYIKVRQKVVEGLAGIGEVELASAVRRRFVELGS

Arabidopsis top hits

e value

%identity

Alignment

AT1G06270.1 Pentatricopeptide repeat (PPR) superfamily protein

4.9e-29

45.2

Show/hide

Query:  FQSSRGFSTLLISSLYSIGELAEAFQVLKATA--------------------VRLADKAVELLKEMVVKVKLMPRQGTIINVVAALRANREVRRAVEIIE
        +    G    L+SSL ++ +L EA +V++  +                     R     V+++KEMV K  + PR+G +  V AALRANRE+ +A+E+IE
Subjt:  FQSSRGFSTLLISSLYSIGELAEAFQVLKATA--------------------VRLADKAVELLKEMVVKVKLMPRQGTIINVVAALRANREVRRAVEIIE

Query:  L------------YELLVEGCLECREYILAGKVTMGMTDRGFIPYIKVRQKVVEGLAGIGEVELASAVRRRFVELGS
                     YE++VEGCLE REYILAGKV M MTDRGFIPYIKVRQKVVE L  IGE +LA  VR+R  EL S
Subjt:  L------------YELLVEGCLECREYILAGKVTMGMTDRGFIPYIKVRQKVVEGLAGIGEVELASAVRRRFVELGS

Sequences

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CDS sequence

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ATGGCTCTCTGCTTTTCTACACTCTTCAAAGCCCTTCACCCTTTCCCCTCTCTCTTCCAGTCCTCCAGAGGATTCTCAACTCTGCTTATATCCTCTCTTTATTCCATTGG
CGAATTAGCTGAGGCCTTTCAAGTTTTGAAAGCAACAGCTGTTAGACTGGCTGACAAGGCAGTGGAATTGCTAAAAGAAATGGTTGTAAAAGTTAAGTTGATGCCAAGAC
AAGGAACGATTATTAATGTTGTGGCTGCGTTACGAGCAAACCGAGAGGTAAGGAGAGCAGTTGAGATCATTGAGCTCTATGAGCTTCTTGTTGAAGGTTGTCTAGAGTGT
CGTGAATATATTTTAGCGGGAAAGGTGACCATGGGGATGACAGACAGAGGGTTTATACCATATATCAAGGTCAGGCAAAAGGTTGTTGAGGGACTGGCTGGCATTGGGGA
AGTGGAACTTGCTTCTGCTGTAAGACGCAGATTTGTAGAGTTGGGGTCTTAG

mRNA sequence

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Protein sequence

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MALCFSTLFKALHPFPSLFQSSRGFSTLLISSLYSIGELAEAFQVLKATAVRLADKAVELLKEMVVKVKLMPRQGTIINVVAALRANREVRRAVEIIELYELLVEGCLEC
REYILAGKVTMGMTDRGFIPYIKVRQKVVEGLAGIGEVELASAVRRRFVELGS

IVF0014981 (gene) of Melon (IVF77) v1 genome