CuGenDBv2

Gene ID	IVF0015046
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	BED-type domain-containing protein
Genome location	chr05:11851276..11851527
RNA-Seq Expression	IVF0015046
Synteny	IVF0015046
Gene Ontology terms	GO:0005634 - nucleus (cellular component) GO:0003677 - DNA binding (molecular function) GO:0046872 - metal ion binding (molecular function) GO:0046983 - protein dimerization activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0040972.1 uncharacterized protein E6C27_scaffold125G001750 [Cucumis melo var. makuwa]

3.29e-33

81.93

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Query:  MEISNFIYVRLGLLNMI-----------PAKTRFATACITLSSIHHQKNNLRKMFTLDEWKDSKWSKEQQGRQVVQTILLASF
        MEISNFIYVR GLLNM+           PAKTRFATACITLSSIHHQKNNLRKMFT DEWKDSKWSKEQQGR+VVQTILLASF
Subjt:  MEISNFIYVRLGLLNMI-----------PAKTRFATACITLSSIHHQKNNLRKMFTLDEWKDSKWSKEQQGRQVVQTILLASF

KAA0050353.1 hypothetical protein E6C27_scaffold88G00840 [Cucumis melo var. makuwa]

6.89e-33

81.93

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Query:  MEISNFIYVRLGLLNMI-----------PAKTRFATACITLSSIHHQKNNLRKMFTLDEWKDSKWSKEQQGRQVVQTILLASF
        MEISNFIYVR GLLNM+           PAKTRFATACITLSSIHHQKNNLRKMFT DEWKDSKWSKEQQGR+VVQTILLASF
Subjt:  MEISNFIYVRLGLLNMI-----------PAKTRFATACITLSSIHHQKNNLRKMFTLDEWKDSKWSKEQQGRQVVQTILLASF

KAA0066645.1 uncharacterized protein E6C27_scaffold979G00720 [Cucumis melo var. makuwa]

4.39e-33

81.93

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Query:  MEISNFIYVRLGLLNMI-----------PAKTRFATACITLSSIHHQKNNLRKMFTLDEWKDSKWSKEQQGRQVVQTILLASF
        MEISNFIYVR GLLNM+           PAKTRFATACITLSSIHHQKNNLRKMFT DEWKDSKWSKEQQGR+VVQTILLASF
Subjt:  MEISNFIYVRLGLLNMI-----------PAKTRFATACITLSSIHHQKNNLRKMFTLDEWKDSKWSKEQQGRQVVQTILLASF

TYK26052.1 hypothetical protein E5676_scaffold1185G00050 [Cucumis melo var. makuwa]

7.07e-33

81.93

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Query:  MEISNFIYVRLGLLNMI-----------PAKTRFATACITLSSIHHQKNNLRKMFTLDEWKDSKWSKEQQGRQVVQTILLASF
        MEISNFIYVR GLLNM+           PAKTRFATACITLSSIHHQKNNLRKMFT DEWKDSKWSKEQQGR+VVQTILLASF
Subjt:  MEISNFIYVRLGLLNMI-----------PAKTRFATACITLSSIHHQKNNLRKMFTLDEWKDSKWSKEQQGRQVVQTILLASF

XP_008460442.1 PREDICTED: uncharacterized protein LOC103499254 [Cucumis melo]

7.56e-34

80.23

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Query:  MEISNFIYVRLGLLNMI-----------PAKTRFATACITLSSIHHQKNNLRKMFTLDEWKDSKWSK---EQQGRQVVQTILLASF
        MEISNFIYVR GLLNM+           PAKTRFATACITLSSIHHQKNNLRKMFT DEWKDSKWSK   EQQGRQVVQTILLASF
Subjt:  MEISNFIYVRLGLLNMI-----------PAKTRFATACITLSSIHHQKNNLRKMFTLDEWKDSKWSK---EQQGRQVVQTILLASF

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TBY2 Uncharacterized protein

2.7e-27

81.93

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Query:  MEISNFIYVRLGLLNMI-----------PAKTRFATACITLSSIHHQKNNLRKMFTLDEWKDSKWSKEQQGRQVVQTILLASF
        MEISNFIYVR GLLNM+           PAKTRFATACITLSSIHHQKNNLRKMFT DEWKDSKWSKEQQGR+VVQTILLASF
Subjt:  MEISNFIYVRLGLLNMI-----------PAKTRFATACITLSSIHHQKNNLRKMFTLDEWKDSKWSKEQQGRQVVQTILLASF

A0A5A7TY62 BED-type domain-containing protein

2.7e-27

81.93

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Query:  MEISNFIYVRLGLLNMI-----------PAKTRFATACITLSSIHHQKNNLRKMFTLDEWKDSKWSKEQQGRQVVQTILLASF
        MEISNFIYVR GLLNM+           PAKTRFATACITLSSIHHQKNNLRKMFT DEWKDSKWSKEQQGR+VVQTILLASF
Subjt:  MEISNFIYVRLGLLNMI-----------PAKTRFATACITLSSIHHQKNNLRKMFTLDEWKDSKWSKEQQGRQVVQTILLASF

A0A5A7V8P5 BED-type domain-containing protein

2.7e-27

81.93

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Query:  MEISNFIYVRLGLLNMI-----------PAKTRFATACITLSSIHHQKNNLRKMFTLDEWKDSKWSKEQQGRQVVQTILLASF
        MEISNFIYVR GLLNM+           PAKTRFATACITLSSIHHQKNNLRKMFT DEWKDSKWSKEQQGR+VVQTILLASF
Subjt:  MEISNFIYVRLGLLNMI-----------PAKTRFATACITLSSIHHQKNNLRKMFTLDEWKDSKWSKEQQGRQVVQTILLASF

A0A5A7VLM8 Uncharacterized protein

2.7e-27

81.93

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Query:  MEISNFIYVRLGLLNMI-----------PAKTRFATACITLSSIHHQKNNLRKMFTLDEWKDSKWSKEQQGRQVVQTILLASF
        MEISNFIYVR GLLNM+           PAKTRFATACITLSSIHHQKNNLRKMFT DEWKDSKWSKEQQGR+VVQTILLASF
Subjt:  MEISNFIYVRLGLLNMI-----------PAKTRFATACITLSSIHHQKNNLRKMFTLDEWKDSKWSKEQQGRQVVQTILLASF

A0A5D3DXN3 BED-type domain-containing protein

2.7e-27

81.93

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Query:  MEISNFIYVRLGLLNMI-----------PAKTRFATACITLSSIHHQKNNLRKMFTLDEWKDSKWSKEQQGRQVVQTILLASF
        MEISNFIYVR GLLNM+           PAKTRFATACITLSSIHHQKNNLRKMFT DEWKDSKWSKEQQGR+VVQTILLASF
Subjt:  MEISNFIYVRLGLLNMI-----------PAKTRFATACITLSSIHHQKNNLRKMFTLDEWKDSKWSKEQQGRQVVQTILLASF

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G36095.1 DNA binding

1.7e-05

36.25

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Query:  SNFIYVRLGLLNMI--------PAKTRFATACI---TLSSIHHQKNNLRKMFTLDEWKDSKWSKEQQGRQVVQTILLASF
        +++IY    L+NM+         AK    T C    T+   H Q+ NLR   T  EW DSKW KE   R V + I+  SF
Subjt:  SNFIYVRLGLLNMI--------PAKTRFATACI---TLSSIHHQKNNLRKMFTLDEWKDSKWSKEQQGRQVVQTILLASF

AT5G33406.1 hAT dimerisation domain-containing protein / transposase-related

2.1e-08

49.09

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Query:  PAKTRFATACITLSSIHHQKNNLRKMFTLDEWKDSKWSKEQQGRQVVQTILLASF
        PA TR AT+ ITL+  H  K+NLRKM   DEW  SKW+KE  G ++       SF
Subjt:  PAKTRFATACITLSSIHHQKNNLRKMFTLDEWKDSKWSKEQQGRQVVQTILLASF

Sequences

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CDS sequence

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ATGGAGATCAGCAACTTCATCTATGTTCGTCTTGGATTATTAAACATGATACCAGCTAAGACTCGCTTTGCTACTGCTTGCATTACATTATCGAGTATACATCATCAAAA
GAACAACTTAAGGAAGATGTTTACTTTAGATGAATGGAAGGATAGCAAATGGAGCAAGGAGCAACAAGGAAGACAAGTAGTTCAGACTATTTTGTTGGCTAGTTTTTGA

mRNA sequence

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Protein sequence

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MEISNFIYVRLGLLNMIPAKTRFATACITLSSIHHQKNNLRKMFTLDEWKDSKWSKEQQGRQVVQTILLASF

IVF0015046 (gene) of Melon (IVF77) v1 genome