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IVF0015053 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0015053
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionCytoplasmic tRNA 2-thiolation protein 1-like
Genome locationchr04:13331788..13332161
RNA-Seq ExpressionIVF0015053
SyntenyIVF0015053
Gene Ontology termsGO:0002098 - tRNA wobble uridine modification (biological process)
GO:0006979 - response to oxidative stress (biological process)
GO:0007064 - mitotic sister chromatid cohesion (biological process)
GO:0032447 - protein urmylation (biological process)
GO:0034227 - tRNA thio-modification (biological process)
GO:0098869 - cellular oxidant detoxification (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0000049 - tRNA binding (molecular function)
GO:0004601 - peroxidase activity (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
GO:0020037 - heme binding (molecular function)
InterPro domainsIPR000541 - Cytoplasmic tRNA 2-thiolation protein 1
IPR014729 - Rossmann-like alpha/beta/alpha sandwich fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038049.1 cytoplasmic tRNA 2-thiolation protein 1-like [Cucumis melo var. makuwa]2.94e-41100Show/hide
Query:  MEFFLLKALDRVVALLKVVRLATGHNAIDMVGTILLNILRGDIARLSRCTKLITDEDGPIPRCKPFKYTYGKKI
        MEFFLLKALDRVVALLKVVRLATGHNAIDMVGTILLNILRGDIARLSRCTKLITDEDGPIPRCKPFKYTYGKKI
Subjt:  MEFFLLKALDRVVALLKVVRLATGHNAIDMVGTILLNILRGDIARLSRCTKLITDEDGPIPRCKPFKYTYGKKI
KAE8652032.1 hypothetical protein Csa_018735 [Cucumis sativus]5.27e-3073.86Show/hide
Query:  KALDRVVALLKVVRLATGHNAIDMVGTILLNILRGDIARLSRCTKLITDEDGPIPRCKPFKYTYGKKIVIYFIFWSHSSRASLASCSL
        +ALDR  ALLKV +LATGHNA DM  T+LLNILRGDIARLSRCT +IT EDGPIPRCKPFKYTY K+I       SHS RASLASCS+
Subjt:  KALDRVVALLKVVRLATGHNAIDMVGTILLNILRGDIARLSRCTKLITDEDGPIPRCKPFKYTYGKKIVIYFIFWSHSSRASLASCSL
TYK20555.1 cytoplasmic tRNA 2-thiolation protein 1-like [Cucumis melo var. makuwa]1.42e-41100Show/hide
Query:  MEFFLLKALDRVVALLKVVRLATGHNAIDMVGTILLNILRGDIARLSRCTKLITDEDGPIPRCKPFKYTYGKKI
        MEFFLLKALDRVVALLKVVRLATGHNAIDMVGTILLNILRGDIARLSRCTKLITDEDGPIPRCKPFKYTYGKKI
Subjt:  MEFFLLKALDRVVALLKVVRLATGHNAIDMVGTILLNILRGDIARLSRCTKLITDEDGPIPRCKPFKYTYGKKI
TYK25841.1 cytoplasmic tRNA 2-thiolation protein 1-like [Cucumis melo var. makuwa]8.33e-3392.54Show/hide
Query:  ALDRVVALLKVVRLATGHNAIDMVGTILLNILRGDIARLSRCTKLITDEDGPIPRCKPFKYTYGKKI
        ALDR VALLKVV+LA GHNAIDMVGTILLNILRGDIARLSRCT LIT EDGPIPRCKPFKYTYGKKI
Subjt:  ALDRVVALLKVVRLATGHNAIDMVGTILLNILRGDIARLSRCTKLITDEDGPIPRCKPFKYTYGKKI
XP_008447661.1 PREDICTED: cytoplasmic tRNA 2-thiolation protein 1-like [Cucumis melo]4.45e-32100Show/hide
Query:  ALDRVVALLKVVRLATGHNAIDMVGTILLNILRGDIARLSRCTKLITDEDGPIPRCKPFK
        ALDRVVALLKVVRLATGHNAIDMVGTILLNILRGDIARLSRCTKLITDEDGPIPRCKPFK
Subjt:  ALDRVVALLKVVRLATGHNAIDMVGTILLNILRGDIARLSRCTKLITDEDGPIPRCKPFK
TrEMBL top hitse value%identityAlignment
A0A1S3BIV7 cytoplasmic tRNA 2-thiolation protein 1-like2.8e-24100Show/hide
Query:  ALDRVVALLKVVRLATGHNAIDMVGTILLNILRGDIARLSRCTKLITDEDGPIPRCKPFK
        ALDRVVALLKVVRLATGHNAIDMVGTILLNILRGDIARLSRCTKLITDEDGPIPRCKPFK
Subjt:  ALDRVVALLKVVRLATGHNAIDMVGTILLNILRGDIARLSRCTKLITDEDGPIPRCKPFK
A0A3P6BH96 Cytoplasmic tRNA 2-thiolation protein 13.1e-2373.81Show/hide
Query:  FFLLKALDRVVALLKVVRLATGHNAIDMVGTILLNILRGDIARLSRCTKLITDEDGPIPRCKPFKYTYGKKIVIY-FIFWSHSS
        +F LKALDR  ALLKV +L TGHNA D+  T+LLNILRGDIARLSRCT + T EDGPIPRCKPFKYTY K+IVIY FI  S SS
Subjt:  FFLLKALDRVVALLKVVRLATGHNAIDMVGTILLNILRGDIARLSRCTKLITDEDGPIPRCKPFKYTYGKKIVIY-FIFWSHSS
A0A5A7T9N6 Cytoplasmic tRNA 2-thiolation protein 1-like1.3e-32100Show/hide
Query:  MEFFLLKALDRVVALLKVVRLATGHNAIDMVGTILLNILRGDIARLSRCTKLITDEDGPIPRCKPFKYTYGKKI
        MEFFLLKALDRVVALLKVVRLATGHNAIDMVGTILLNILRGDIARLSRCTKLITDEDGPIPRCKPFKYTYGKKI
Subjt:  MEFFLLKALDRVVALLKVVRLATGHNAIDMVGTILLNILRGDIARLSRCTKLITDEDGPIPRCKPFKYTYGKKI
A0A5D3DAG6 Cytoplasmic tRNA 2-thiolation protein 1-like1.3e-32100Show/hide
Query:  MEFFLLKALDRVVALLKVVRLATGHNAIDMVGTILLNILRGDIARLSRCTKLITDEDGPIPRCKPFKYTYGKKI
        MEFFLLKALDRVVALLKVVRLATGHNAIDMVGTILLNILRGDIARLSRCTKLITDEDGPIPRCKPFKYTYGKKI
Subjt:  MEFFLLKALDRVVALLKVVRLATGHNAIDMVGTILLNILRGDIARLSRCTKLITDEDGPIPRCKPFKYTYGKKI
A0A5D3DQ85 Cytoplasmic tRNA 2-thiolation protein 1-like1.9e-2592.54Show/hide
Query:  ALDRVVALLKVVRLATGHNAIDMVGTILLNILRGDIARLSRCTKLITDEDGPIPRCKPFKYTYGKKI
        ALDR VALLKVV+LA GHNAIDMVGTILLNILRGDIARLSRCT LIT EDGPIPRCKPFKYTYGKKI
Subjt:  ALDRVVALLKVVRLATGHNAIDMVGTILLNILRGDIARLSRCTKLITDEDGPIPRCKPFKYTYGKKI
SwissProt top hitse value%identityAlignment
O64862 Cytoplasmic tRNA 2-thiolation protein 16.0e-2471.43Show/hide
Query:  FLLKALDRVVALLKVVRLATGHNAIDMVGTILLNILRGDIARLSRCTKLITDEDGPIPRCKPFKYTYGKKIVIYFIF
        F  +ALDR  ALLKV +L TGHNA D+  T+LLNILRGDIARLSRCT + T EDGPIPRCKPFKYTY K+IV+Y  F
Subjt:  FLLKALDRVVALLKVVRLATGHNAIDMVGTILLNILRGDIARLSRCTKLITDEDGPIPRCKPFKYTYGKKIVIYFIF
Q05AW7 Cytoplasmic tRNA 2-thiolation protein 16.5e-1855.84Show/hide
Query:  FLLKALDRVVALLKVVRLATGHNAIDMVGTILLNILRGDIARLSRCTKLITDEDGPIPRCKPFKYTYGKKIVIYFIF
        F  +ALDR   +L + ++ TGHNA D+  T+L+N LRGDIARL RCT + T  +G IPRCKP KYTY K+IV+Y  F
Subjt:  FLLKALDRVVALLKVVRLATGHNAIDMVGTILLNILRGDIARLSRCTKLITDEDGPIPRCKPFKYTYGKKIVIYFIF
Q5FW05 Cytoplasmic tRNA 2-thiolation protein 11.4e-1755.84Show/hide
Query:  FLLKALDRVVALLKVVRLATGHNAIDMVGTILLNILRGDIARLSRCTKLITDEDGPIPRCKPFKYTYGKKIVIYFIF
        F  +ALDR   +L V ++ TGHNA D+  T+L+N LRGDIARL RCT + T  +G IPRCKP KY Y K+IV+Y  F
Subjt:  FLLKALDRVVALLKVVRLATGHNAIDMVGTILLNILRGDIARLSRCTKLITDEDGPIPRCKPFKYTYGKKIVIYFIF
Q6Z6G6 Cytoplasmic tRNA 2-thiolation protein 13.0e-2370.13Show/hide
Query:  FLLKALDRVVALLKVVRLATGHNAIDMVGTILLNILRGDIARLSRCTKLITDEDGPIPRCKPFKYTYGKKIVIYFIF
        F  +ALDR  ALLKV ++ TGHNA D+  T+LLNILRGDIARLSRCT + T EDGPIPRCKPFKYTY K+IV+Y  F
Subjt:  FLLKALDRVVALLKVVRLATGHNAIDMVGTILLNILRGDIARLSRCTKLITDEDGPIPRCKPFKYTYGKKIVIYFIF
Q94480 Cytoplasmic tRNA 2-thiolation protein 11.4e-1754.55Show/hide
Query:  FLLKALDRVVALLKVVRLATGHNAIDMVGTILLNILRGDIARLSRCTKLITDEDGPIPRCKPFKYTYGKKIVIYFIF
        F  +ALDR   +LK  ++ TGHNA D+  T+L+N+LRGDI RL RC  +IT  +G +PR KPFKYTY K+IV+Y  F
Subjt:  FLLKALDRVVALLKVVRLATGHNAIDMVGTILLNILRGDIARLSRCTKLITDEDGPIPRCKPFKYTYGKKIVIYFIF
Arabidopsis top hitse value%identityAlignment
AT1G76170.1 2-thiocytidine tRNA biosynthesis protein, TtcA1.2e-2470.13Show/hide
Query:  FLLKALDRVVALLKVVRLATGHNAIDMVGTILLNILRGDIARLSRCTKLITDEDGPIPRCKPFKYTYGKKIVIYFIF
        F  +ALDR  ALLKV +L TGHNA D+  T++LNILRGDIARLSRCT + T EDGPIPRCKPFKYTY K+IV+Y  F
Subjt:  FLLKALDRVVALLKVVRLATGHNAIDMVGTILLNILRGDIARLSRCTKLITDEDGPIPRCKPFKYTYGKKIVIYFIF
AT2G44270.1 repressor of lrx14.3e-2571.43Show/hide
Query:  FLLKALDRVVALLKVVRLATGHNAIDMVGTILLNILRGDIARLSRCTKLITDEDGPIPRCKPFKYTYGKKIVIYFIF
        F  +ALDR  ALLKV +L TGHNA D+  T+LLNILRGDIARLSRCT + T EDGPIPRCKPFKYTY K+IV+Y  F
Subjt:  FLLKALDRVVALLKVVRLATGHNAIDMVGTILLNILRGDIARLSRCTKLITDEDGPIPRCKPFKYTYGKKIVIYFIF
AT2G44270.2 repressor of lrx12.2e-2171.64Show/hide
Query:  FLLKALDRVVALLKVVRLATGHNAIDMVGTILLNILRGDIARLSRCTKLITDEDGPIPRCKPFKYTY
        F  +ALDR  ALLKV +L TGHNA D+  T+LLNILRGDIARLSRCT + T EDGPIPRCKPF +TY
Subjt:  FLLKALDRVVALLKVVRLATGHNAIDMVGTILLNILRGDIARLSRCTKLITDEDGPIPRCKPFKYTY

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAATTTTTTCTCCTGAAGGCCCTTGATAGAGTTGTTGCATTGTTGAAAGTAGTCAGGCTAGCCACGGGGCACAATGCAATTGATATGGTTGGAACAATTCTATTAAA
TATATTACGAGGTGATATTGCAAGATTGAGTAGATGTACTAAATTAATTACCGATGAAGATGGACCAATTCCAAGATGCAAACCTTTCAAGTACACATATGGAAAGAAGA
TAGTAATATATTTTATATTTTGGTCTCATAGCTCTAGAGCAAGTCTTGCATCATGTAGCTTATTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAATTTTTTCTCCTGAAGGCCCTTGATAGAGTTGTTGCATTGTTGAAAGTAGTCAGGCTAGCCACGGGGCACAATGCAATTGATATGGTTGGAACAATTCTATTAAA
TATATTACGAGGTGATATTGCAAGATTGAGTAGATGTACTAAATTAATTACCGATGAAGATGGACCAATTCCAAGATGCAAACCTTTCAAGTACACATATGGAAAGAAGA
TAGTAATATATTTTATATTTTGGTCTCATAGCTCTAGAGCAAGTCTTGCATCATGTAGCTTATTTTGA
Protein sequenceShow/hide protein sequence
MEFFLLKALDRVVALLKVVRLATGHNAIDMVGTILLNILRGDIARLSRCTKLITDEDGPIPRCKPFKYTYGKKIVIYFIFWSHSSRASLASCSLF