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IVF0015062 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0015062
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionDNA-directed RNA polymerase
Genome locationchr01:33061768..33062713
RNA-Seq ExpressionIVF0015062
SyntenyIVF0015062
Gene Ontology termsGO:0006351 - transcription, DNA-templated (biological process)
GO:0009561 - megagametogenesis (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0032549 - ribonucleoside binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR015712 - DNA-directed RNA polymerase, subunit 2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051031.1 DNA-directed RNA polymerase III subunit 2 isoform X1 [Cucumis melo var. makuwa]1.89e-49100Show/hide
Query:  MVVKLPEDASKNEKQGDDSNPIDSDIDKQFIGLPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTEIKKIVKANDRIESSTDPSIYL
        MVVKLPEDASKNEKQGDDSNPIDSDIDKQFIGLPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTEIKKIVKANDRIESSTDPSIYL
Subjt:  MVVKLPEDASKNEKQGDDSNPIDSDIDKQFIGLPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTEIKKIVKANDRIESSTDPSIYL

TYK03826.1 DNA-directed RNA polymerase III subunit 2 isoform X1 [Cucumis melo var. makuwa]1.16e-5690.29Show/hide
Query:  MVVKLPEDASKNEKQGDDSNPIDSDIDKQFIGLPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTEIKKIVKANDRIESSTDPSIYLSEALGALFNK
        MVVKLPEDASKNEKQGDDSNPIDSDIDKQFIGLPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTEIKKIVKANDRIESSTDPSIYL E   ++   
Subjt:  MVVKLPEDASKNEKQGDDSNPIDSDIDKQFIGLPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTEIKKIVKANDRIESSTDPSIYLSEALGALFNK

Query:  LYG
         YG
Subjt:  LYG

XP_004141655.2 DNA-directed RNA polymerase III subunit 2 [Cucumis sativus]7.76e-4897.78Show/hide
Query:  MVVKLPEDASKNEKQGDDSNPIDSDIDKQFIGLPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTEIKKIVKANDRIESSTDPSIYL
        MVVKLPEDASKNEK GD+SNPIDSDIDKQFIGLPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTEIKKIVKANDRIESSTDPSIYL
Subjt:  MVVKLPEDASKNEKQGDDSNPIDSDIDKQFIGLPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTEIKKIVKANDRIESSTDPSIYL

XP_008462447.1 PREDICTED: DNA-directed RNA polymerase III subunit 2 isoform X1 [Cucumis melo]1.87e-49100Show/hide
Query:  MVVKLPEDASKNEKQGDDSNPIDSDIDKQFIGLPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTEIKKIVKANDRIESSTDPSIYL
        MVVKLPEDASKNEKQGDDSNPIDSDIDKQFIGLPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTEIKKIVKANDRIESSTDPSIYL
Subjt:  MVVKLPEDASKNEKQGDDSNPIDSDIDKQFIGLPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTEIKKIVKANDRIESSTDPSIYL

XP_038903915.1 DNA-directed RNA polymerase III subunit 2 isoform X3 [Benincasa hispida]4.07e-4694.44Show/hide
Query:  MVVKLPEDASKNEKQGDDSNPIDSDIDKQFIGLPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTEIKKIVKANDRIESSTDPSIYL
        MVVKLPED SKN +QGDD NPIDSDIDKQF+GLPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTEIKKIVKANDRIESSTDPSIYL
Subjt:  MVVKLPEDASKNEKQGDDSNPIDSDIDKQFIGLPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTEIKKIVKANDRIESSTDPSIYL

TrEMBL top hitse value%identityAlignment
A0A1S3CIH7 DNA-directed RNA polymerase subunit beta1.3e-41100Show/hide
Query:  MVVKLPEDASKNEKQGDDSNPIDSDIDKQFIGLPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTEIKKIVKANDRIESSTDPSIYL
        MVVKLPEDASKNEKQGDDSNPIDSDIDKQFIGLPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTEIKKIVKANDRIESSTDPSIYL
Subjt:  MVVKLPEDASKNEKQGDDSNPIDSDIDKQFIGLPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTEIKKIVKANDRIESSTDPSIYL

A0A5A7UBS2 DNA-directed RNA polymerase subunit beta1.3e-41100Show/hide
Query:  MVVKLPEDASKNEKQGDDSNPIDSDIDKQFIGLPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTEIKKIVKANDRIESSTDPSIYL
        MVVKLPEDASKNEKQGDDSNPIDSDIDKQFIGLPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTEIKKIVKANDRIESSTDPSIYL
Subjt:  MVVKLPEDASKNEKQGDDSNPIDSDIDKQFIGLPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTEIKKIVKANDRIESSTDPSIYL

A0A5D3C055 DNA-directed RNA polymerase2.6e-4290.29Show/hide
Query:  MVVKLPEDASKNEKQGDDSNPIDSDIDKQFIGLPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTEIKKIVKANDRIESSTDPSIYLSEALGALFNK
        MVVKLPEDASKNEKQGDDSNPIDSDIDKQFIGLPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTEIKKIVKANDRIESSTDPSIYL E   ++   
Subjt:  MVVKLPEDASKNEKQGDDSNPIDSDIDKQFIGLPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTEIKKIVKANDRIESSTDPSIYLSEALGALFNK

Query:  LYG
         YG
Subjt:  LYG

A0A6J1CEJ1 DNA-directed RNA polymerase subunit beta5.7e-3487.78Show/hide
Query:  MVVKLPEDASKNEKQGDDSNPIDSDIDKQFIGLPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTEIKKIVKANDRIESSTDPSIYL
        MVV+  EDASK  KQ D  +PIDSDIDKQF+GLPIKSAVDKFQLLPEFLKVRGLV+QHLDSFNYFVNTEIKKIVKANDRIESSTDPSIYL
Subjt:  MVVKLPEDASKNEKQGDDSNPIDSDIDKQFIGLPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTEIKKIVKANDRIESSTDPSIYL

A0A6J1G1X8 DNA-directed RNA polymerase subunit beta4.4e-3487.78Show/hide
Query:  MVVKLPEDASKNEKQGDDSNPIDSDIDKQFIGLPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTEIKKIVKANDRIESSTDPSIYL
        MVVK  +D SKN KQ DD N I SDIDKQF+GLPIKSAVDKFQLLPEFLKVRGLV+QHLDSFNYFVNTEIKKIVKANDRIESSTDPSIYL
Subjt:  MVVKLPEDASKNEKQGDDSNPIDSDIDKQFIGLPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTEIKKIVKANDRIESSTDPSIYL

SwissProt top hitse value%identityAlignment
F4KD38 DNA-directed RNA polymerase III subunit 24.1e-2173.53Show/hide
Query:  DSDIDKQFIGLPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTEIKKIVKANDRIESSTDPSIYL
        D  IDK+ +  PIKS  DKFQL+PEFLKVRGLVKQHLDSFNYF+N  I KIVKAN RI S+ DPSIYL
Subjt:  DSDIDKQFIGLPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTEIKKIVKANDRIESSTDPSIYL

P22276 DNA-directed RNA polymerase III subunit RPC29.8e-1567.86Show/hide
Query:  IKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTEIKKIVKANDRIESSTDPSIYL
        I +A DK+ LLP FLKV+GLVKQHLDSFNYFV+T++KKI+KAN  I S  DP  YL
Subjt:  IKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTEIKKIVKANDRIESSTDPSIYL

P25167 DNA-directed RNA polymerase III subunit RPC23.7e-1454.69Show/hide
Query:  DKQFIGLPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTEIKKIVKANDRIESSTDPSIYL
        D +   +PIK   +K++L+P FL+V+GLVKQH+DSFN+F+N +IKKIVKAN+ + S  DP  YL
Subjt:  DKQFIGLPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTEIKKIVKANDRIESSTDPSIYL

P59470 DNA-directed RNA polymerase III subunit RPC25.7e-1563.16Show/hide
Query:  PIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTEIKKIVKANDRIESSTDPSIYL
        PI +  +K++LLP FLKV+GLVKQH+DSFNYF+N EIKKI+KAN+++ S  DP  YL
Subjt:  PIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTEIKKIVKANDRIESSTDPSIYL

Q9NW08 DNA-directed RNA polymerase III subunit RPC23.4e-1560Show/hide
Query:  IGLPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTEIKKIVKANDRIESSTDPSIYL
        +  PI +  +K++LLP FLKV+GLVKQH+DSFNYF+N EIKKI+KAN+++ S  DP  YL
Subjt:  IGLPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTEIKKIVKANDRIESSTDPSIYL

Arabidopsis top hitse value%identityAlignment
AT5G45140.1 nuclear RNA polymerase C22.9e-2273.53Show/hide
Query:  DSDIDKQFIGLPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTEIKKIVKANDRIESSTDPSIYL
        D  IDK+ +  PIKS  DKFQL+PEFLKVRGLVKQHLDSFNYF+N  I KIVKAN RI S+ DPSIYL
Subjt:  DSDIDKQFIGLPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTEIKKIVKANDRIESSTDPSIYL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGTGAAGCTGCCAGAAGACGCTTCGAAGAATGAGAAGCAAGGTGACGATTCTAATCCAATCGATTCTGACATTGATAAGCAATTCATAGGCCTTCCTATCAAGTC
AGCCGTCGATAAGTTTCAACTTCTTCCTGAATTTTTGAAGGTAAGAGGTCTGGTCAAGCAACACTTGGATTCGTTTAACTACTTCGTGAATACAGAGATAAAAAAGATAG
TCAAGGCCAACGATCGCATTGAATCCAGTACTGATCCGAGTATTTATCTTAGTGAGGCGTTGGGAGCTCTATTCAATAAGCTGTATGGGAACGGATTGTATGAAGGATTC
GTGGTGGGCGAAGAAAAGATACAGATACCCCTATTCTACAATTCGCCGATGACACCTTTCTATTTTGTAAGTATGATGAATGTATGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTTGTGAAGCTGCCAGAAGACGCTTCGAAGAATGAGAAGCAAGGTGACGATTCTAATCCAATCGATTCTGACATTGATAAGCAATTCATAGGCCTTCCTATCAAGTC
AGCCGTCGATAAGTTTCAACTTCTTCCTGAATTTTTGAAGGTAAGAGGTCTGGTCAAGCAACACTTGGATTCGTTTAACTACTTCGTGAATACAGAGATAAAAAAGATAG
TCAAGGCCAACGATCGCATTGAATCCAGTACTGATCCGAGTATTTATCTTAGTGAGGCGTTGGGAGCTCTATTCAATAAGCTGTATGGGAACGGATTGTATGAAGGATTC
GTGGTGGGCGAAGAAAAGATACAGATACCCCTATTCTACAATTCGCCGATGACACCTTTCTATTTTGTAAGTATGATGAATGTATGTTAA
Protein sequenceShow/hide protein sequence
MVVKLPEDASKNEKQGDDSNPIDSDIDKQFIGLPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTEIKKIVKANDRIESSTDPSIYLSEALGALFNKLYGNGLYEGF
VVGEEKIQIPLFYNSPMTPFYFVSMMNVC