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IVF0015095 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0015095
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionReverse transcriptase
Genome locationchr12:7932310..7932516
RNA-Seq ExpressionIVF0015095
SyntenyIVF0015095
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025165.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]7.07e-1169.64Show/hide
Query:  TEILGSLLAQLQVRSSLIAEIVRKQLEDSQLQKRLEKTKQSQETEFELRSDEAIGK
        TE  GSLLAQ QVRSSL+ EIVR+Q EDS LQK+ EK+K+  E EFELR+DEAI K
Subjt:  TEILGSLLAQLQVRSSLIAEIVRKQLEDSQLQKRLEKTKQSQETEFELRSDEAIGK

KAA0041132.1 hypothetical protein E6C27_scaffold128G00450 [Cucumis melo var. makuwa]9.74e-1169.64Show/hide
Query:  TEILGSLLAQLQVRSSLIAEIVRKQLEDSQLQKRLEKTKQSQETEFELRSDEAIGK
        TE  GSLLAQ QVRSSL+ EIVR+QLEDS LQK+ EK+K+  E EFELR+D AI K
Subjt:  TEILGSLLAQLQVRSSLIAEIVRKQLEDSQLQKRLEKTKQSQETEFELRSDEAIGK

KAA0054351.1 reverse transcriptase [Cucumis melo var. makuwa]8.54e-1161.19Show/hide
Query:  MATEILGSLLAQLQVRSSLIAEIVRKQLEDSQLQKRLEKTKQSQETEFELRSDEAI-GKVDYVFQVL
        M  E  GSLLAQ QVRSSL+AEIV +Q EDS LQK L K KQ +E EFELR++ AI  + DY F++L
Subjt:  MATEILGSLLAQLQVRSSLIAEIVRKQLEDSQLQKRLEKTKQSQETEFELRSDEAI-GKVDYVFQVL

KAA0060864.1 retrotransposon protein, putative, Ty3-gypsy sub-class [Cucumis melo var. makuwa]7.10e-1169.64Show/hide
Query:  TEILGSLLAQLQVRSSLIAEIVRKQLEDSQLQKRLEKTKQSQETEFELRSDEAIGK
        TE  GSLLAQ QVRSSL+ EIVR+Q EDS LQK+ EK+K+  E EFELR+DEAI K
Subjt:  TEILGSLLAQLQVRSSLIAEIVRKQLEDSQLQKRLEKTKQSQETEFELRSDEAIGK

TYK29668.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.43e-1069.23Show/hide
Query:  GSLLAQLQVRSSLIAEIVRKQLEDSQLQKRLEKTKQSQETEFELRSDEAIGK
        GSL+AQ QVRSSL+AEI+R+Q E+S LQK+LEK+K+  E EFELR+DEAI K
Subjt:  GSLLAQLQVRSSLIAEIVRKQLEDSQLQKRLEKTKQSQETEFELRSDEAIGK

TrEMBL top hitse value%identityAlignment
A0A5A7SL18 DNA/RNA polymerases superfamily protein2.6e-0869.64Show/hide
Query:  TEILGSLLAQLQVRSSLIAEIVRKQLEDSQLQKRLEKTKQSQETEFELRSDEAIGK
        TE  GSLLAQ QVRSSL+ EIVR+Q EDS LQK+ EK+K+  E EFELR+DEAI K
Subjt:  TEILGSLLAQLQVRSSLIAEIVRKQLEDSQLQKRLEKTKQSQETEFELRSDEAIGK

A0A5A7TCD9 Reverse transcriptase3.4e-0867.24Show/hide
Query:  MATEILGSLLAQLQVRSSLIAEIVRKQLEDSQLQKRLEKTKQSQETEFELRSDEAIGK
        + TE  GSLLAQ QVRSSL+ EIVR+QLEDS LQK+ EK+K+  E EFELR+D AI K
Subjt:  MATEILGSLLAQLQVRSSLIAEIVRKQLEDSQLQKRLEKTKQSQETEFELRSDEAIGK

A0A5A7V0L5 Retrotransposon protein, putative, Ty3-gypsy sub-class2.6e-0867.24Show/hide
Query:  MATEILGSLLAQLQVRSSLIAEIVRKQLEDSQLQKRLEKTKQSQETEFELRSDEAIGK
        + TE  GSLLAQ QVRSSL+ EIVR+Q EDS LQK+ EK+K+  E EFELR+DEAI K
Subjt:  MATEILGSLLAQLQVRSSLIAEIVRKQLEDSQLQKRLEKTKQSQETEFELRSDEAIGK

A0A5D3C103 Putative retrotransposon protein7.7e-0865.52Show/hide
Query:  MATEILGSLLAQLQVRSSLIAEIVRKQLEDSQLQKRLEKTKQSQETEFELRSDEAIGK
        + TE  GSLLAQ Q+RSSL+ EIVR+Q EDS LQK+LEK+K+  E EFELR+D AI K
Subjt:  MATEILGSLLAQLQVRSSLIAEIVRKQLEDSQLQKRLEKTKQSQETEFELRSDEAIGK

A0A5D3CMM1 Reverse transcriptase4.5e-0861.19Show/hide
Query:  MATEILGSLLAQLQVRSSLIAEIVRKQLEDSQLQKRLEKTKQSQETEFELRSDEAI-GKVDYVFQVL
        M  E  GSLLAQ QVRSSL+AEIV +Q EDS LQK L K KQ +E EFELR++ AI  + DY F++L
Subjt:  MATEILGSLLAQLQVRSSLIAEIVRKQLEDSQLQKRLEKTKQSQETEFELRSDEAI-GKVDYVFQVL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTACAGAGATTTTAGGGAGCTTGTTAGCTCAGCTTCAGGTTAGGTCTTCTCTGATAGCTGAGATTGTTAGAAAGCAGTTAGAAGACAGTCAACTTCAGAAAAGGCT
TGAAAAGACCAAGCAAAGCCAAGAAACTGAATTTGAGTTGAGGTCAGATGAAGCCATAGGTAAGGTAGACTATGTGTTCCAAGTGTTAGAGAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTACAGAGATTTTAGGGAGCTTGTTAGCTCAGCTTCAGGTTAGGTCTTCTCTGATAGCTGAGATTGTTAGAAAGCAGTTAGAAGACAGTCAACTTCAGAAAAGGCT
TGAAAAGACCAAGCAAAGCCAAGAAACTGAATTTGAGTTGAGGTCAGATGAAGCCATAGGTAAGGTAGACTATGTGTTCCAAGTGTTAGAGAATTGA
Protein sequenceShow/hide protein sequence
MATEILGSLLAQLQVRSSLIAEIVRKQLEDSQLQKRLEKTKQSQETEFELRSDEAIGKVDYVFQVLEN