; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0015120 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0015120
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposable element Tf2
Genome locationchr12:8827945..8828644
RNA-Seq ExpressionIVF0015120
SyntenyIVF0015120
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032918.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]1.70e-12990.13Show/hide
Query:  MEPPPGRQRPPNQRQPPPDNQNNSSLKPPQSVASSSGTTPSRKEFPSQSSAPSPMSAENYTMDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLR
        MEPPP RQRPPN+RQPPP+NQNNSSLKPPQSVASSSGTTPSRKEFPSQSSAPSPMSAENY MDLQFEQVSRRRQGSA+RTLTIQSDSSSLPPIPSTALLR
Subjt:  MEPPPGRQRPPNQRQPPPDNQNNSSLKPPQSVASSSGTTPSRKEFPSQSSAPSPMSAENYTMDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLR

Query:  PSGPTTLNKRAASPTASSSRSAIPRNPSS-------------APINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKARTFYEYILVD
        PSGPTT NKRAASP ASSSRSAIPRNPSS              PINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSK RTFYEYILVD
Subjt:  PSGPTTLNKRAASPTASSSRSAIPRNPSS-------------APINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKARTFYEYILVD

Query:  SKSAEITHVSDKNDPSKIIYSKLRIFRVLTPSY
        SKSAEITHV DKNDPSKIIYSKLRIFRVLTPSY
Subjt:  SKSAEITHVSDKNDPSKIIYSKLRIFRVLTPSY

KAA0040832.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]8.28e-11582.83Show/hide
Query:  MEPPPGRQRPPNQRQPPPDNQNNSSLKPPQSVASSSGTTPSRKEFPSQSSAPSPMSAENYTMDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLR
        MEPPPGRQRP NQRQP  ++QN++  +PPQSVA+SSGTTPSRK+ P+QSSAPSPMSAENY MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIP TALL 
Subjt:  MEPPPGRQRPPNQRQPPPDNQNNSSLKPPQSVASSSGTTPSRKEFPSQSSAPSPMSAENYTMDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLR

Query:  PSGPTTLNKRAASPTASSSRSAIPRNPSS-------------APINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKARTFYEYILVD
        PSGPT  NKRAASP ASSSRSAIPRNPSS              PINGYFTKTTMVDLTIEPEFDGPSVQEVC+QIFPHGFNFL EDLSK RTFYEYILVD
Subjt:  PSGPTTLNKRAASPTASSSRSAIPRNPSS-------------APINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKARTFYEYILVD

Query:  SKSAEITHVSDKNDPSKIIYSKLRIFRVLTPSY
        SKSA+ITHV DK DPSKIIYSKLRIFRVLTPSY
Subjt:  SKSAEITHVSDKNDPSKIIYSKLRIFRVLTPSY

KAA0050443.1 polyprotein [Cucumis melo var. makuwa]2.01e-11081.12Show/hide
Query:  MEPPPGRQRPPNQRQPPPDNQNNSSLKPPQSVASSSGTTPSRKEFPSQSSAPSPMSAENYTMDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLR
        MEPPPGRQ P NQRQ P  NQNNS  +PPQ++ SSS TTPS+ +  +QSSAPS MSAENY MDLQFEQVSRR QGSAQRTLTIQSDSSSLPPIPSTALLR
Subjt:  MEPPPGRQRPPNQRQPPPDNQNNSSLKPPQSVASSSGTTPSRKEFPSQSSAPSPMSAENYTMDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLR

Query:  PSGPTTLNKRAASPTASSSRSAIPRNPSS-------------APINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKARTFYEYILVD
        PSGPTT NKRAASPTASSSRSAIPRNPSS               INGYFTKTTMVDLTIEPEFDGPSV EVC+QIFPH FNFLPEDL+K  TFYEYILVD
Subjt:  PSGPTTLNKRAASPTASSSRSAIPRNPSS-------------APINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKARTFYEYILVD

Query:  SKSAEITHVSDKNDPSKIIYSKLRIFRVLTPSY
        SKSAEITHV DKNDPSKIIYSKLRIFRVLTPSY
Subjt:  SKSAEITHVSDKNDPSKIIYSKLRIFRVLTPSY

TYK17808.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]5.10e-11683.26Show/hide
Query:  MEPPPGRQRPPNQRQPPPDNQNNSSLKPPQSVASSSGTTPSRKEFPSQSSAPSPMSAENYTMDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLR
        MEPPPGRQRP NQRQP  ++QN++  +PPQSVA+SSGTTPSRK+ P+QSSAPSPMSAENY MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIP TALL 
Subjt:  MEPPPGRQRPPNQRQPPPDNQNNSSLKPPQSVASSSGTTPSRKEFPSQSSAPSPMSAENYTMDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLR

Query:  PSGPTTLNKRAASPTASSSRSAIPRNPSS-------------APINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKARTFYEYILVD
        PSGPT  NKRAASP ASSSRSAIPRNPSS              PINGYFTKTTMVDLTIEPEFDGPSVQEVC+QIFPHGFNFLPEDLSK RTFYEYILVD
Subjt:  PSGPTTLNKRAASPTASSSRSAIPRNPSS-------------APINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKARTFYEYILVD

Query:  SKSAEITHVSDKNDPSKIIYSKLRIFRVLTPSY
        SKSA+ITHV DK DPSKIIYSKLRIFRVLTPSY
Subjt:  SKSAEITHVSDKNDPSKIIYSKLRIFRVLTPSY

TYK28082.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]9.72e-12989.7Show/hide
Query:  MEPPPGRQRPPNQRQPPPDNQNNSSLKPPQSVASSSGTTPSRKEFPSQSSAPSPMSAENYTMDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLR
        MEPPP RQRPPN+RQPPP+NQNNSSLKPPQSVASSSGTTPSRKEFPSQSSAPSPMSAENY MDLQFEQVSRRRQGSA+RTLTIQSDSSSLPPIPST LLR
Subjt:  MEPPPGRQRPPNQRQPPPDNQNNSSLKPPQSVASSSGTTPSRKEFPSQSSAPSPMSAENYTMDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLR

Query:  PSGPTTLNKRAASPTASSSRSAIPRNPSS-------------APINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKARTFYEYILVD
        PSGPTT NKRAASP ASSSRSAIPRNPSS              PINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSK RTFYEYILVD
Subjt:  PSGPTTLNKRAASPTASSSRSAIPRNPSS-------------APINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKARTFYEYILVD

Query:  SKSAEITHVSDKNDPSKIIYSKLRIFRVLTPSY
        SKSAEITHV DKNDPSKIIYSKLRIFRVLTPSY
Subjt:  SKSAEITHVSDKNDPSKIIYSKLRIFRVLTPSY

TrEMBL top hitse value%identityAlignment
A0A5A7SQU5 Retrotransposable element Tf22.2e-10490.13Show/hide
Query:  MEPPPGRQRPPNQRQPPPDNQNNSSLKPPQSVASSSGTTPSRKEFPSQSSAPSPMSAENYTMDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLR
        MEPPP RQRPPN+RQPPP+NQNNSSLKPPQSVASSSGTTPSRKEFPSQSSAPSPMSAENY MDLQFEQVSRRRQGSA+RTLTIQSDSSSLPPIPSTALLR
Subjt:  MEPPPGRQRPPNQRQPPPDNQNNSSLKPPQSVASSSGTTPSRKEFPSQSSAPSPMSAENYTMDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLR

Query:  PSGPTTLNKRAASPTASSSRSAIPRNPSS-------------APINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKARTFYEYILVD
        PSGPTT NKRAASP ASSSRSAIPRNPSS              PINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSK RTFYEYILVD
Subjt:  PSGPTTLNKRAASPTASSSRSAIPRNPSS-------------APINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKARTFYEYILVD

Query:  SKSAEITHVSDKNDPSKIIYSKLRIFRVLTPSY
        SKSAEITHV DKNDPSKIIYSKLRIFRVLTPSY
Subjt:  SKSAEITHVSDKNDPSKIIYSKLRIFRVLTPSY

A0A5A7TBK1 Retrotransposable element Tf23.9e-9382.83Show/hide
Query:  MEPPPGRQRPPNQRQPPPDNQNNSSLKPPQSVASSSGTTPSRKEFPSQSSAPSPMSAENYTMDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLR
        MEPPPGRQRP NQRQP  ++QN++  +PPQSVA+SSGTTPSRK+ P+QSSAPSPMSAENY MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIP TALL 
Subjt:  MEPPPGRQRPPNQRQPPPDNQNNSSLKPPQSVASSSGTTPSRKEFPSQSSAPSPMSAENYTMDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLR

Query:  PSGPTTLNKRAASPTASSSRSAIPRNPSS-------------APINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKARTFYEYILVD
        PSGPT  NKRAASP ASSSRSAIPRNPSS              PINGYFTKTTMVDLTIEPEFDGPSVQEVC+QIFPHGFNFL EDLSK RTFYEYILVD
Subjt:  PSGPTTLNKRAASPTASSSRSAIPRNPSS-------------APINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKARTFYEYILVD

Query:  SKSAEITHVSDKNDPSKIIYSKLRIFRVLTPSY
        SKSA+ITHV DK DPSKIIYSKLRIFRVLTPSY
Subjt:  SKSAEITHVSDKNDPSKIIYSKLRIFRVLTPSY

A0A5A7U3G5 Polyprotein8.9e-9081.12Show/hide
Query:  MEPPPGRQRPPNQRQPPPDNQNNSSLKPPQSVASSSGTTPSRKEFPSQSSAPSPMSAENYTMDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLR
        MEPPPGRQ P NQRQ P  NQNNS  +PPQ++ SSS TTPS+ +  +QSSAPS MSAENY MDLQFEQVSRR QGSAQRTLTIQSDSSSLPPIPSTALLR
Subjt:  MEPPPGRQRPPNQRQPPPDNQNNSSLKPPQSVASSSGTTPSRKEFPSQSSAPSPMSAENYTMDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLR

Query:  PSGPTTLNKRAASPTASSSRSAIPRNPSS-------------APINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKARTFYEYILVD
        PSGPTT NKRAASPTASSSRSAIPRNPSS               INGYFTKTTMVDLTIEPEFDGPSV EVC+QIFPH FNFLPEDL+K  TFYEYILVD
Subjt:  PSGPTTLNKRAASPTASSSRSAIPRNPSS-------------APINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKARTFYEYILVD

Query:  SKSAEITHVSDKNDPSKIIYSKLRIFRVLTPSY
        SKSAEITHV DKNDPSKIIYSKLRIFRVLTPSY
Subjt:  SKSAEITHVSDKNDPSKIIYSKLRIFRVLTPSY

A0A5D3D2Q6 Retrotransposable element Tf24.6e-9483.26Show/hide
Query:  MEPPPGRQRPPNQRQPPPDNQNNSSLKPPQSVASSSGTTPSRKEFPSQSSAPSPMSAENYTMDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLR
        MEPPPGRQRP NQRQP  ++QN++  +PPQSVA+SSGTTPSRK+ P+QSSAPSPMSAENY MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIP TALL 
Subjt:  MEPPPGRQRPPNQRQPPPDNQNNSSLKPPQSVASSSGTTPSRKEFPSQSSAPSPMSAENYTMDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLR

Query:  PSGPTTLNKRAASPTASSSRSAIPRNPSS-------------APINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKARTFYEYILVD
        PSGPT  NKRAASP ASSSRSAIPRNPSS              PINGYFTKTTMVDLTIEPEFDGPSVQEVC+QIFPHGFNFLPEDLSK RTFYEYILVD
Subjt:  PSGPTTLNKRAASPTASSSRSAIPRNPSS-------------APINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKARTFYEYILVD

Query:  SKSAEITHVSDKNDPSKIIYSKLRIFRVLTPSY
        SKSA+ITHV DK DPSKIIYSKLRIFRVLTPSY
Subjt:  SKSAEITHVSDKNDPSKIIYSKLRIFRVLTPSY

A0A5D3DX32 Retrotransposable element Tf28.3e-10489.7Show/hide
Query:  MEPPPGRQRPPNQRQPPPDNQNNSSLKPPQSVASSSGTTPSRKEFPSQSSAPSPMSAENYTMDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLR
        MEPPP RQRPPN+RQPPP+NQNNSSLKPPQSVASSSGTTPSRKEFPSQSSAPSPMSAENY MDLQFEQVSRRRQGSA+RTLTIQSDSSSLPPIPST LLR
Subjt:  MEPPPGRQRPPNQRQPPPDNQNNSSLKPPQSVASSSGTTPSRKEFPSQSSAPSPMSAENYTMDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLR

Query:  PSGPTTLNKRAASPTASSSRSAIPRNPSS-------------APINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKARTFYEYILVD
        PSGPTT NKRAASP ASSSRSAIPRNPSS              PINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSK RTFYEYILVD
Subjt:  PSGPTTLNKRAASPTASSSRSAIPRNPSS-------------APINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKARTFYEYILVD

Query:  SKSAEITHVSDKNDPSKIIYSKLRIFRVLTPSY
        SKSAEITHV DKNDPSKIIYSKLRIFRVLTPSY
Subjt:  SKSAEITHVSDKNDPSKIIYSKLRIFRVLTPSY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAACCACCTCCTGGCCGGCAACGGCCACCGAACCAGCGGCAACCGCCGCCAGACAATCAAAATAATAGCTCATTGAAACCACCTCAATCAGTAGCTTCCTCCTCAGG
AACTACTCCTTCCAGAAAGGAATTCCCAAGTCAATCCTCTGCACCGTCACCTATGAGTGCAGAAAACTACACCATGGACTTGCAGTTCGAGCAAGTTTCCAGGCGACGAC
AAGGTTCTGCTCAAAGAACTTTGACCATTCAATCAGACTCTTCGAGTCTTCCCCCTATTCCTTCAACCGCGTTGTTGCGTCCCTCTGGACCAACAACTCTAAATAAGCGT
GCCGCTTCCCCGACCGCTTCTTCCTCAAGGTCTGCAATACCGAGGAATCCTTCCTCAGCTCCAATTAATGGTTATTTCACCAAAACCACAATGGTTGATTTAACTATAGA
ACCAGAATTCGATGGACCTTCTGTCCAAGAAGTCTGTAGTCAAATATTTCCTCATGGGTTCAATTTCTTGCCCGAGGATCTTTCAAAAGCCAGGACTTTCTACGAGTACA
TTTTAGTTGACTCCAAATCAGCTGAAATTACTCATGTCTCAGATAAAAATGATCCCTCCAAGATCATTTATTCAAAGTTGAGAATTTTTCGTGTTCTCACTCCATCTTAC
TAG
mRNA sequenceShow/hide mRNA sequence
ATGGAACCACCTCCTGGCCGGCAACGGCCACCGAACCAGCGGCAACCGCCGCCAGACAATCAAAATAATAGCTCATTGAAACCACCTCAATCAGTAGCTTCCTCCTCAGG
AACTACTCCTTCCAGAAAGGAATTCCCAAGTCAATCCTCTGCACCGTCACCTATGAGTGCAGAAAACTACACCATGGACTTGCAGTTCGAGCAAGTTTCCAGGCGACGAC
AAGGTTCTGCTCAAAGAACTTTGACCATTCAATCAGACTCTTCGAGTCTTCCCCCTATTCCTTCAACCGCGTTGTTGCGTCCCTCTGGACCAACAACTCTAAATAAGCGT
GCCGCTTCCCCGACCGCTTCTTCCTCAAGGTCTGCAATACCGAGGAATCCTTCCTCAGCTCCAATTAATGGTTATTTCACCAAAACCACAATGGTTGATTTAACTATAGA
ACCAGAATTCGATGGACCTTCTGTCCAAGAAGTCTGTAGTCAAATATTTCCTCATGGGTTCAATTTCTTGCCCGAGGATCTTTCAAAAGCCAGGACTTTCTACGAGTACA
TTTTAGTTGACTCCAAATCAGCTGAAATTACTCATGTCTCAGATAAAAATGATCCCTCCAAGATCATTTATTCAAAGTTGAGAATTTTTCGTGTTCTCACTCCATCTTAC
TAG
Protein sequenceShow/hide protein sequence
MEPPPGRQRPPNQRQPPPDNQNNSSLKPPQSVASSSGTTPSRKEFPSQSSAPSPMSAENYTMDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTLNKR
AASPTASSSRSAIPRNPSSAPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKARTFYEYILVDSKSAEITHVSDKNDPSKIIYSKLRIFRVLTPSY