; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0015162 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0015162
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Descriptionmediator of RNA polymerase II transcription subunit 22b-like
Genome locationchr12:16178361..16179925
RNA-Seq ExpressionIVF0015162
SyntenyIVF0015162
Gene Ontology termsGO:0006357 - regulation of transcription by RNA polymerase II (biological process)
GO:0016592 - mediator complex (cellular component)
GO:0003712 - transcription coregulator activity (molecular function)
InterPro domainsIPR009332 - Mediator of RNA polymerase II transcription subunit 22


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7029838.1 Mediator of RNA polymerase II transcription subunit 22b [Cucurbita argyrosperma subsp. argyrosperma]6.85e-8994Show/hide
Query:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
        MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRA+RMVQAADSLLKLVSELKQTAIFSGFASLNDH
Subjt:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH

Query:  VEQRIVEFNQQAQQTERLLSRIGEEAAANLKELESHYYSSTQRTDQNNLT
        VEQRIVEFNQQA+QT+R+LS+IGEEAA  LKELESHYYSSTQRT QN+LT
Subjt:  VEQRIVEFNQQAQQTERLLSRIGEEAAANLKELESHYYSSTQRTDQNNLT

XP_004145443.1 mediator of RNA polymerase II transcription subunit 22b [Cucumis sativus]5.23e-9398.67Show/hide
Query:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
        MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
Subjt:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH

Query:  VEQRIVEFNQQAQQTERLLSRIGEEAAANLKELESHYYSSTQRTDQNNLT
        VEQRIVEFNQQAQQT+RLLSRIGEEAAANLKELESHYYSSTQRTDQN+LT
Subjt:  VEQRIVEFNQQAQQTERLLSRIGEEAAANLKELESHYYSSTQRTDQNNLT

XP_008459037.1 PREDICTED: mediator of RNA polymerase II transcription subunit 22a-like isoform X1 [Cucumis melo]1.58e-93100Show/hide
Query:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
        MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
Subjt:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH

Query:  VEQRIVEFNQQAQQTERLLSRIGEEAAANLKELESHYYSSTQRTDQNNLT
        VEQRIVEFNQQAQQTERLLSRIGEEAAANLKELESHYYSSTQRTDQNNLT
Subjt:  VEQRIVEFNQQAQQTERLLSRIGEEAAANLKELESHYYSSTQRTDQNNLT

XP_008459039.1 PREDICTED: mediator of RNA polymerase II transcription subunit 22b-like isoform X2 [Cucumis melo]3.15e-94100Show/hide
Query:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
        MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
Subjt:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH

Query:  VEQRIVEFNQQAQQTERLLSRIGEEAAANLKELESHYYSSTQRTDQNNLT
        VEQRIVEFNQQAQQTERLLSRIGEEAAANLKELESHYYSSTQRTDQNNLT
Subjt:  VEQRIVEFNQQAQQTERLLSRIGEEAAANLKELESHYYSSTQRTDQNNLT

XP_038891249.1 mediator of RNA polymerase II transcription subunit 22b-like [Benincasa hispida]2.91e-9096.67Show/hide
Query:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
        MNKGIGGG GPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
Subjt:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH

Query:  VEQRIVEFNQQAQQTERLLSRIGEEAAANLKELESHYYSSTQRTDQNNLT
        VEQRIVEFNQQAQQT+RLLS IGEEAAA+LKELESHYYSSTQRT QNNLT
Subjt:  VEQRIVEFNQQAQQTERLLSRIGEEAAANLKELESHYYSSTQRTDQNNLT

TrEMBL top hitse value%identityAlignment
A0A0A0M174 Uncharacterized protein1.4e-7098.67Show/hide
Query:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
        MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
Subjt:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH

Query:  VEQRIVEFNQQAQQTERLLSRIGEEAAANLKELESHYYSSTQRTDQNNLT
        VEQRIVEFNQQAQQT+RLLSRIGEEAAANLKELESHYYSSTQRTDQN+LT
Subjt:  VEQRIVEFNQQAQQTERLLSRIGEEAAANLKELESHYYSSTQRTDQNNLT

A0A1S3C993 mediator of RNA polymerase II transcription subunit 22b-like isoform X21.7e-71100Show/hide
Query:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
        MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
Subjt:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH

Query:  VEQRIVEFNQQAQQTERLLSRIGEEAAANLKELESHYYSSTQRTDQNNLT
        VEQRIVEFNQQAQQTERLLSRIGEEAAANLKELESHYYSSTQRTDQNNLT
Subjt:  VEQRIVEFNQQAQQTERLLSRIGEEAAANLKELESHYYSSTQRTDQNNLT

A0A1S3CAG5 mediator of RNA polymerase II transcription subunit 22a-like isoform X11.7e-71100Show/hide
Query:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
        MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
Subjt:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH

Query:  VEQRIVEFNQQAQQTERLLSRIGEEAAANLKELESHYYSSTQRTDQNNLT
        VEQRIVEFNQQAQQTERLLSRIGEEAAANLKELESHYYSSTQRTDQNNLT
Subjt:  VEQRIVEFNQQAQQTERLLSRIGEEAAANLKELESHYYSSTQRTDQNNLT

A0A5A7TMC4 Mediator of RNA polymerase II transcription subunit 22a-like isoform X11.7e-71100Show/hide
Query:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
        MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
Subjt:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH

Query:  VEQRIVEFNQQAQQTERLLSRIGEEAAANLKELESHYYSSTQRTDQNNLT
        VEQRIVEFNQQAQQTERLLSRIGEEAAANLKELESHYYSSTQRTDQNNLT
Subjt:  VEQRIVEFNQQAQQTERLLSRIGEEAAANLKELESHYYSSTQRTDQNNLT

A0A6J1EN95 mediator of RNA polymerase II transcription subunit 22b-like4.2e-6793.33Show/hide
Query:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
        MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRA+RMVQAADSLLKLVSELKQTAIFSGFASLNDH
Subjt:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH

Query:  VEQRIVEFNQQAQQTERLLSRIGEEAAANLKELESHYYSSTQRTDQNNLT
        VEQRIVEFNQQA+QT+R++S+IGEEAA  LKELESHYYSSTQRT QN LT
Subjt:  VEQRIVEFNQQAQQTERLLSRIGEEAAANLKELESHYYSSTQRTDQNNLT

SwissProt top hitse value%identityAlignment
A0JPN6 Mediator of RNA polymerase II transcription subunit 225.2e-1434.03Show/hide
Query:  AAAAAAAQKQKLLLQ----RVETDIANIVDNFTHLVNVSRVNDP-----PVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQR
        A   A  Q ++ LLQ    R++ DI +I+DNFT ++  +++ D        +  Q+++ M +RAA +V+A +SL+KLVS+LKQ  I + F S+N+ ++QR
Subjt:  AAAAAAAQKQKLLLQ----RVETDIANIVDNFTHLVNVSRVNDP-----PVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQR

Query:  IVEFNQQAQQTERLLSRIGEEAAANLKELESHYYSSTQRTDQNN
          +     ++ +R L  + +E + +L ELE  YYSS+    + N
Subjt:  IVEFNQQAQQTERLLSRIGEEAAANLKELESHYYSSTQRTDQNN

Q54XB0 Putative mediator of RNA polymerase II transcription subunit 221.8e-1430.07Show/hide
Query:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
        MN G G  + P         + Q+   +++++ I  +++N+ +++ +S+VND P++N+ E + ME R + M+ A + LLK++ ELKQ  I + F+++ + 
Subjt:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH

Query:  VEQRIVEFNQQAQQTERLLSRIGEEAAANLKELESHYYSSTQR
        V  + + F+++ ++T + +  I EE + +LKELE  YY+S+ +
Subjt:  VEQRIVEFNQQAQQTERLLSRIGEEAAANLKELESHYYSSTQR

Q62276 Mediator of RNA polymerase II transcription subunit 225.2e-1434.03Show/hide
Query:  AAAAAAAQKQKLLLQ----RVETDIANIVDNFTHLVNVSRVNDP-----PVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQR
        A   A  Q ++ LLQ    R++ DI +I+DNFT ++  +++ D        +  Q+++ M +RAA +V+A +SL+KLVS+LKQ  I + F S+N+ ++QR
Subjt:  AAAAAAAQKQKLLLQ----RVETDIANIVDNFTHLVNVSRVNDP-----PVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQR

Query:  IVEFNQQAQQTERLLSRIGEEAAANLKELESHYYSSTQRTDQNN
          +     ++ +R L  + +E + +L ELE  YYSS+    + N
Subjt:  IVEFNQQAQQTERLLSRIGEEAAANLKELESHYYSSTQRTDQNN

Q8LCH5 Mediator of RNA polymerase II transcription subunit 22b7.2e-5681.43Show/hide
Query:  GIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQ
        G GGG+GPTAAAAAAA QKQK LLQRVETDI ++VDNFT +VNVSRV+DPPV+NSQE++MMEMRA+RMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQ
Subjt:  GIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQ

Query:  RIVEFNQQAQQTERLLSRIGEEAAANLKELESHYYSSTQR
        RI EF+Q+A++T RLL+RI ++A+ANLKELESHYYSS QR
Subjt:  RIVEFNQQAQQTERLLSRIGEEAAANLKELESHYYSSTQR

Q9SA42 Mediator of RNA polymerase II transcription subunit 22a4.0e-5476.03Show/hide
Query:  MNK--GIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLN
        MNK  G GGG+GPTAAAAAAA QKQK LLQRV+TDI ++VDNF  +VNV+RV+DPP++NSQE++MMEMRA+R+VQAADSLLKLVSELKQTAIFSGFASLN
Subjt:  MNK--GIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLN

Query:  DHVEQRIVEFNQQAQQTERLLSRIGEEAAANLKELESHYYSSTQRT
        DHVEQRI EF+Q+A++T RLL+RI ++A+A+LKELESHYYSS QR+
Subjt:  DHVEQRIVEFNQQAQQTERLLSRIGEEAAANLKELESHYYSSTQRT

Arabidopsis top hitse value%identityAlignment
AT1G07950.1 Surfeit locus protein 5 subunit 22 of Mediator complex5.1e-5781.43Show/hide
Query:  GIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQ
        G GGG+GPTAAAAAAA QKQK LLQRVETDI ++VDNFT +VNVSRV+DPPV+NSQE++MMEMRA+RMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQ
Subjt:  GIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQ

Query:  RIVEFNQQAQQTERLLSRIGEEAAANLKELESHYYSSTQR
        RI EF+Q+A++T RLL+RI ++A+ANLKELESHYYSS QR
Subjt:  RIVEFNQQAQQTERLLSRIGEEAAANLKELESHYYSSTQR

AT1G16430.1 Surfeit locus protein 5 subunit 22 of Mediator complex2.8e-5576.03Show/hide
Query:  MNK--GIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLN
        MNK  G GGG+GPTAAAAAAA QKQK LLQRV+TDI ++VDNF  +VNV+RV+DPP++NSQE++MMEMRA+R+VQAADSLLKLVSELKQTAIFSGFASLN
Subjt:  MNK--GIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLN

Query:  DHVEQRIVEFNQQAQQTERLLSRIGEEAAANLKELESHYYSSTQRT
        DHVEQRI EF+Q+A++T RLL+RI ++A+A+LKELESHYYSS QR+
Subjt:  DHVEQRIVEFNQQAQQTERLLSRIGEEAAANLKELESHYYSSTQRT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACAAAGGCATTGGTGGTGGAACTGGTCCCACTGCAGCGGCTGCGGCGGCGGCAGCTCAGAAGCAGAAACTGCTTCTCCAGAGAGTGGAAACTGATATAGCCAATAT
TGTTGACAACTTCACCCACCTTGTCAACGTCTCTAGAGTGAACGATCCACCAGTTAGAAATTCACAGGAATCTTTTATGATGGAAATGCGCGCCGCCAGAATGGTTCAGG
CAGCTGATTCTTTGCTGAAGTTGGTTTCAGAACTTAAGCAAACAGCCATCTTTTCTGGATTTGCTTCACTAAACGATCATGTGGAGCAAAGAATAGTGGAATTCAATCAG
CAGGCACAGCAAACCGAACGTCTTTTATCTAGAATTGGTGAAGAAGCTGCTGCCAATTTGAAGGAGCTTGAATCTCATTATTATTCTTCAACACAGAGGACTGATCAGAA
CAACCTAACGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAACAAAGGCATTGGTGGTGGAACTGGTCCCACTGCAGCGGCTGCGGCGGCGGCAGCTCAGAAGCAGAAACTGCTTCTCCAGAGAGTGGAAACTGATATAGCCAATAT
TGTTGACAACTTCACCCACCTTGTCAACGTCTCTAGAGTGAACGATCCACCAGTTAGAAATTCACAGGAATCTTTTATGATGGAAATGCGCGCCGCCAGAATGGTTCAGG
CAGCTGATTCTTTGCTGAAGTTGGTTTCAGAACTTAAGCAAACAGCCATCTTTTCTGGATTTGCTTCACTAAACGATCATGTGGAGCAAAGAATAGTGGAATTCAATCAG
CAGGCACAGCAAACCGAACGTCTTTTATCTAGAATTGGTGAAGAAGCTGCTGCCAATTTGAAGGAGCTTGAATCTCATTATTATTCTTCAACACAGAGGACTGATCAGAA
CAACCTAACGTGA
Protein sequenceShow/hide protein sequence
MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQ
QAQQTERLLSRIGEEAAANLKELESHYYSSTQRTDQNNLT