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IVF0015206 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0015206
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGag/pol protein
Genome locationchr12:11593932..11594240
RNA-Seq ExpressionIVF0015206
SyntenyIVF0015206
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0005840 - ribosome (cellular component)
GO:0016020 - membrane (cellular component)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026022.1 Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa]2.58e-2972.46Show/hide
Query:  MLSDTFSQGIGWEVSPLQRELWCDPERSKRWPILPTSDERSFGVKNHWKCTCSKGNGLSLRTSSIRPKK
        ML D FS GIG E + L+ ELWCDP+RSKRWP+LPTS ERS G +NHWKCTCS+GNGLS RTS  RPKK
Subjt:  MLSDTFSQGIGWEVSPLQRELWCDPERSKRWPILPTSDERSFGVKNHWKCTCSKGNGLSLRTSSIRPKK

KAA0061317.1 hypothetical protein E6C27_scaffold6213G00130 [Cucumis melo var. makuwa]1.95e-3265.22Show/hide
Query:  SVLVISPSIFEARTPTSSTHTPGMLSDTFSQGIGWEVSPLQRELWCDPERSKRWPILPTSDERSFGVKNHWKCTCSKGNGLSLRTSSIRPKK
        +VLVIS SIFEART  +STHT GML   F+QGIG E S L+ ELW DP+R KRWP+L TS ER  GV+NHWKCTCS  N LS RTS + P K
Subjt:  SVLVISPSIFEARTPTSSTHTPGMLSDTFSQGIGWEVSPLQRELWCDPERSKRWPILPTSDERSFGVKNHWKCTCSKGNGLSLRTSSIRPKK

KAA0062888.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa]2.89e-3567.68Show/hide
Query:  PTVSSIFSVLVISPSIFEARTPTSSTHTPGMLSDTFSQGIGWEVSPLQRELWCDPERSKRWPILPTSDERSFGVKNHWKCTCSKGNGLSLRTSSIRPKK
        PTVSS+  VLVI+ SIFEARTP +STHT GML D FS+GIG E S L+ ELWC+P+RSKRW +LPTS ERS G++NH KCT  +GNGLS RT S  PKK
Subjt:  PTVSSIFSVLVISPSIFEARTPTSSTHTPGMLSDTFSQGIGWEVSPLQRELWCDPERSKRWPILPTSDERSFGVKNHWKCTCSKGNGLSLRTSSIRPKK

KAA0066117.1 mitochondrial intermembrane space import and assembly protein 40 [Cucumis melo var. makuwa]5.72e-3277.46Show/hide
Query:  PGMLSDTFSQGIGWEVSPLQRELWCDPERSKRWPILPTSDERSFGVKNHWKCTCSKGNGLSLRTSSIRPKK
        PGML DTFS GIG E S L+ ELWCDP+RSKRWP LPTS ERS GV+NHWKCTCS+GNGLS RTS  RPKK
Subjt:  PGMLSDTFSQGIGWEVSPLQRELWCDPERSKRWPILPTSDERSFGVKNHWKCTCSKGNGLSLRTSSIRPKK

TYK22521.1 uncharacterized protein E5676_scaffold387G00220 [Cucumis melo var. makuwa]4.14e-3045.45Show/hide
Query:  PPTVSSIFSVLVISPSIFEARTPTSSTHTPGMLSDTFSQ------------------------------------------------------GIGWEVS
        PPTVS++ SVLV S SIF A TP +STHTPGML DTFS+                                                      GIG E S
Subjt:  PPTVSSIFSVLVISPSIFEARTPTSSTHTPGMLSDTFSQ------------------------------------------------------GIGWEVS

Query:  PLQRELWCDPERSKRWPILPTSDERSFGVKNHWKCTCSKGNGLSLRTSSIRPKK
         L+ EL CDP+ SKRWP+LPT  ERS G +NHWKCTCS+GNGLS RTS  RP+K
Subjt:  PLQRELWCDPERSKRWPILPTSDERSFGVKNHWKCTCSKGNGLSLRTSSIRPKK

TrEMBL top hitse value%identityAlignment
A0A5A7SLK2 Retrovirus-related Pol polyprotein from transposon 17.66.3e-2272.46Show/hide
Query:  MLSDTFSQGIGWEVSPLQRELWCDPERSKRWPILPTSDERSFGVKNHWKCTCSKGNGLSLRTSSIRPKK
        ML D FS GIG E + L+ ELWCDP+RSKRWP+LPTS ERS G +NHWKCTCS+GNGLS RTS  RPKK
Subjt:  MLSDTFSQGIGWEVSPLQRELWCDPERSKRWPILPTSDERSFGVKNHWKCTCSKGNGLSLRTSSIRPKK

A0A5A7V368 Uncharacterized protein3.9e-2465.22Show/hide
Query:  SVLVISPSIFEARTPTSSTHTPGMLSDTFSQGIGWEVSPLQRELWCDPERSKRWPILPTSDERSFGVKNHWKCTCSKGNGLSLRTSSIRPKK
        +VLVIS SIFEART  +STHT GML   F+QGIG E S L+ ELW DP+R KRWP+L TS ER  GV+NHWKCTCS  N LS RTS + P K
Subjt:  SVLVISPSIFEARTPTSSTHTPGMLSDTFSQGIGWEVSPLQRELWCDPERSKRWPILPTSDERSFGVKNHWKCTCSKGNGLSLRTSSIRPKK

A0A5A7V5J2 Non-LTR retroelement reverse transcriptase-like protein2.0e-2867.68Show/hide
Query:  PTVSSIFSVLVISPSIFEARTPTSSTHTPGMLSDTFSQGIGWEVSPLQRELWCDPERSKRWPILPTSDERSFGVKNHWKCTCSKGNGLSLRTSSIRPKK
        PTVSS+  VLVI+ SIFEARTP +STHT GML D FS+GIG E S L+ ELWC+P+RSKRW +LPTS ERS G++NH KCT  +GNGLS RT S  PKK
Subjt:  PTVSSIFSVLVISPSIFEARTPTSSTHTPGMLSDTFSQGIGWEVSPLQRELWCDPERSKRWPILPTSDERSFGVKNHWKCTCSKGNGLSLRTSSIRPKK

A0A5A7VGB1 Mitochondrial intermembrane space import and assembly protein 401.4e-2477.46Show/hide
Query:  PGMLSDTFSQGIGWEVSPLQRELWCDPERSKRWPILPTSDERSFGVKNHWKCTCSKGNGLSLRTSSIRPKK
        PGML DTFS GIG E S L+ ELWCDP+RSKRWP LPTS ERS GV+NHWKCTCS+GNGLS RTS  RPKK
Subjt:  PGMLSDTFSQGIGWEVSPLQRELWCDPERSKRWPILPTSDERSFGVKNHWKCTCSKGNGLSLRTSSIRPKK

A0A5D3DFP2 Uncharacterized protein6.7e-2445.45Show/hide
Query:  PPTVSSIFSVLVISPSIFEARTPTSSTHTPGMLSDTFSQ------------------------------------------------------GIGWEVS
        PPTVS++ SVLV S SIF A TP +STHTPGML DTFS+                                                      GIG E S
Subjt:  PPTVSSIFSVLVISPSIFEARTPTSSTHTPGMLSDTFSQ------------------------------------------------------GIGWEVS

Query:  PLQRELWCDPERSKRWPILPTSDERSFGVKNHWKCTCSKGNGLSLRTSSIRPKK
         L+ EL CDP+ SKRWP+LPT  ERS G +NHWKCTCS+GNGLS RTS  RP+K
Subjt:  PLQRELWCDPERSKRWPILPTSDERSFGVKNHWKCTCSKGNGLSLRTSSIRPKK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCCCGACGGTTTCTTCCATTTTCTCCGTGTTGGTCATAAGTCCTTCGATCTTCGAAGCTCGTACCCCGACGAGTTCAACCCACACTCCTGGTATGCTCTCTGACAC
GTTTTCCCAAGGTATAGGATGGGAAGTGAGCCCGTTGCAGAGAGAACTGTGGTGCGACCCAGAACGGTCGAAAAGATGGCCAATTCTTCCAACTAGTGACGAACGCTCGT
TCGGTGTCAAAAACCACTGGAAATGCACTTGCAGCAAAGGAAACGGGTTGAGCTTGAGGACTTCCAGCATTCGTCCTAAGAAATGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGCCCCCGACGGTTTCTTCCATTTTCTCCGTGTTGGTCATAAGTCCTTCGATCTTCGAAGCTCGTACCCCGACGAGTTCAACCCACACTCCTGGTATGCTCTCTGACAC
GTTTTCCCAAGGTATAGGATGGGAAGTGAGCCCGTTGCAGAGAGAACTGTGGTGCGACCCAGAACGGTCGAAAAGATGGCCAATTCTTCCAACTAGTGACGAACGCTCGT
TCGGTGTCAAAAACCACTGGAAATGCACTTGCAGCAAAGGAAACGGGTTGAGCTTGAGGACTTCCAGCATTCGTCCTAAGAAATGCTAG
Protein sequenceShow/hide protein sequence
MPPTVSSIFSVLVISPSIFEARTPTSSTHTPGMLSDTFSQGIGWEVSPLQRELWCDPERSKRWPILPTSDERSFGVKNHWKCTCSKGNGLSLRTSSIRPKKC