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IVF0015221 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0015221
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr12:19027279..19027446
RNA-Seq ExpressionIVF0015221
SyntenyIVF0015221
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0054051.1 retrotransposon protein [Cucumis melo var. makuwa]1.91e-33100Show/hide
Query:  MTYCDDIDDVDEGDSAYATTTASEDIHYIETTNEWSQWRDELAESMFTDWQLRNA
        MTYCDDIDDVDEGDSAYATTTASEDIHYIETTNEWSQWRDELAESMFTDWQLRNA
Subjt:  MTYCDDIDDVDEGDSAYATTTASEDIHYIETTNEWSQWRDELAESMFTDWQLRNA
KAA0062284.1 retrotransposon protein [Cucumis melo var. makuwa]5.32e-2990.91Show/hide
Query:  MTYCDDIDDVDEGDSAYATTTASEDIHYIETTNEWSQWRDELAESMFTDWQLRNA
        MTYCDDIDD DEGDS YATTTASEDI YIETTNEWSQWRD+LAESMFT+WQLRNA
Subjt:  MTYCDDIDDVDEGDSAYATTTASEDIHYIETTNEWSQWRDELAESMFTDWQLRNA
TYK05336.1 retrotransposon protein [Cucumis melo var. makuwa]2.16e-2887.27Show/hide
Query:  MTYCDDIDDVDEGDSAYATTTASEDIHYIETTNEWSQWRDELAESMFTDWQLRNA
        MTYC+D+DD DEGDS YATTTASEDI YIETTNEWSQWRD+LAESMFTDWQLRN+
Subjt:  MTYCDDIDDVDEGDSAYATTTASEDIHYIETTNEWSQWRDELAESMFTDWQLRNA
TYK22655.1 retrotransposon protein [Cucumis melo var. makuwa]2.09e-2889.09Show/hide
Query:  MTYCDDIDDVDEGDSAYATTTASEDIHYIETTNEWSQWRDELAESMFTDWQLRNA
        MTYCDD+DD DE DS YATTTASEDI YIETTNEWSQWRDEL ESMFTDWQLRNA
Subjt:  MTYCDDIDDVDEGDSAYATTTASEDIHYIETTNEWSQWRDELAESMFTDWQLRNA
XP_016899482.1 PREDICTED: uncharacterized protein LOC107990543 [Cucumis melo]1.11e-2892.73Show/hide
Query:  MTYCDDIDDVDEGDSAYATTTASEDIHYIETTNEWSQWRDELAESMFTDWQLRNA
        MTYCDD+ DVDEGDSAYATTTASEDIHYIET NEWSQWRDELAESMFTDW+LRNA
Subjt:  MTYCDDIDDVDEGDSAYATTTASEDIHYIETTNEWSQWRDELAESMFTDWQLRNA
TrEMBL top hitse value%identityAlignment
A0A5A7SNH9 Putative nuclease HARBI13.7e-2192.73Show/hide
Query:  MTYCDDIDDVDEGDSAYATTTASEDIHYIETTNEWSQWRDELAESMFTDWQLRNA
        MTYCDD+ DVDEGDSAYATTTASEDIHYIET NEWSQWRDELAESMFTDW+LRNA
Subjt:  MTYCDDIDDVDEGDSAYATTTASEDIHYIETTNEWSQWRDELAESMFTDWQLRNA
A0A5A7TW41 Retrotransposon protein2.2e-2192.73Show/hide
Query:  MTYCDDIDDVDEGDSAYATTTASEDIHYIETTNEWSQWRDELAESMFTDWQLRNA
        MTYC D+DDVDEGDS YATT ASEDIHYIETTNEWSQWRDELAESMFTDWQLRNA
Subjt:  MTYCDDIDDVDEGDSAYATTTASEDIHYIETTNEWSQWRDELAESMFTDWQLRNA
A0A5A7VK86 Retrotransposon protein2.2e-2190.91Show/hide
Query:  MTYCDDIDDVDEGDSAYATTTASEDIHYIETTNEWSQWRDELAESMFTDWQLRNA
        MTYC+D+DDVDEGDS YATTTASEDIHYIETTNEWSQWRDEL ESMFTDWQL NA
Subjt:  MTYCDDIDDVDEGDSAYATTTASEDIHYIETTNEWSQWRDELAESMFTDWQLRNA
A0A5D3BDZ0 Retrotransposon protein1.8e-23100Show/hide
Query:  MTYCDDIDDVDEGDSAYATTTASEDIHYIETTNEWSQWRDELAESMFTDWQLRNA
        MTYCDDIDDVDEGDSAYATTTASEDIHYIETTNEWSQWRDELAESMFTDWQLRNA
Subjt:  MTYCDDIDDVDEGDSAYATTTASEDIHYIETTNEWSQWRDELAESMFTDWQLRNA
A0A5D3CUG9 Retrotransposon protein2.2e-2192.73Show/hide
Query:  MTYCDDIDDVDEGDSAYATTTASEDIHYIETTNEWSQWRDELAESMFTDWQLRNA
        MTYC D+DDVDEGDS YATT ASEDIHYIETTNEWSQWRDELAESMFTDWQLRNA
Subjt:  MTYCDDIDDVDEGDSAYATTTASEDIHYIETTNEWSQWRDELAESMFTDWQLRNA
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACATATTGTGACGACATTGACGACGTAGACGAGGGAGACTCTGCATACGCGACGACCACCGCTTCAGAAGACATTCACTACATTGAGACGACAAACGAGTGGTCTCA
GTGGCGCGACGAACTAGCTGAATCGATGTTCACTGATTGGCAGTTGCGTAATGCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGACATATTGTGACGACATTGACGACGTAGACGAGGGAGACTCTGCATACGCGACGACCACCGCTTCAGAAGACATTCACTACATTGAGACGACAAACGAGTGGTCTCA
GTGGCGCGACGAACTAGCTGAATCGATGTTCACTGATTGGCAGTTGCGTAATGCTTAG
Protein sequenceShow/hide protein sequence
MTYCDDIDDVDEGDSAYATTTASEDIHYIETTNEWSQWRDELAESMFTDWQLRNA