CuGenDBv2

Gene ID	IVF0015300
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Ribosome biogenesis protein
Genome location	chr09:3172637..3175128
RNA-Seq Expression	IVF0015300
Synteny	IVF0015300
Gene Ontology terms	GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process) GO:0005730 - nucleolus (cellular component) GO:0030686 - 90S preribosome (cellular component) GO:0030688 - preribosome, small subunit precursor (cellular component)
InterPro domains	IPR028160 - Ribosome biogenesis protein Slx9-like

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0037498.1 putative ribosome biogenesis protein slx9-like [Cucumis melo var. makuwa]

1.26e-97

100

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Query:  MGKPVSRSDVKSKAERKFEKKVQFYERVGESIATLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMG
        MGKPVSRSDVKSKAERKFEKKVQFYERVGESIATLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMG
Subjt:  MGKPVSRSDVKSKAERKFEKKVQFYERVGESIATLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMG

Query:  TVLNHPVFQADPLRAVQLHLEGTQPTEEPKKKKMNKNGSKKRKEKKLKASARPSSMEM
        TVLNHPVFQADPLRAVQLHLEGTQPTEEPKKKKMNKNGSKKRKEKKLKASARPSSMEM
Subjt:  TVLNHPVFQADPLRAVQLHLEGTQPTEEPKKKKMNKNGSKKRKEKKLKASARPSSMEM

KAA0062508.1 putative ribosome biogenesis protein slx9-like [Cucumis melo var. makuwa]

2.75e-86

96.08

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Query:  SRSDVKSKAERKFEKKVQFYERVGESIATLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMGTVLNH
        ++SDVKSKAERKFEKKVQFYERVGESIATLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMGTVLNH
Subjt:  SRSDVKSKAERKFEKKVQFYERVGESIATLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMGTVLNH

Query:  PVFQADPLRAVQLHLEGTQPTEEPKKKKMNKNGSKKRKEKKLKASARPSSMEM
        PVFQADPLRAVQLHLEGTQP EEPKKKK+NKNGSKKRKEKK KA ARPSSMEM
Subjt:  PVFQADPLRAVQLHLEGTQPTEEPKKKKMNKNGSKKRKEKKLKASARPSSMEM

XP_004144346.1 putative ribosome biogenesis protein slx9-like [Cucumis sativus]

2.84e-94

96.84

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Query:  MGKPVSRSDVKSKAERKFEKKVQFYERVGESIATLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMG
        MGKPVSRSDVKSKAERKFEKKVQFYERVGE+I TLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMG
Subjt:  MGKPVSRSDVKSKAERKFEKKVQFYERVGESIATLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMG

Query:  TVLNHPVFQADPLRAVQLHLEGTQPTEEPKKKKMNKNGSKKRKEKKLKASARPSSMEM
        TVLNHPVFQADPLRAVQLHLEGTQP EEPKKKKMNKNGSKKRKEKK KASA+PSSMEM
Subjt:  TVLNHPVFQADPLRAVQLHLEGTQPTEEPKKKKMNKNGSKKRKEKKLKASARPSSMEM

XP_038883686.1 putative ribosome biogenesis protein slx9-like isoform X1 [Benincasa hispida]

4.29e-82

87.97

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Query:  MGKPVSRSDVKSKAERKFEKKVQFYERVGESIATLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMG
        MGKPVSRSD KSKAERKFEKKVQFYERVGE+I+TLNAQK+I+KKK++RRRKRDLKAFDLS LSEFLPGL A KQKPSAAE KLNCKSRLKF+LKERKQM 
Subjt:  MGKPVSRSDVKSKAERKFEKKVQFYERVGESIATLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMG

Query:  TVLNHPVFQADPLRAVQLHLEGTQPTEEPKKKKMNKNGSKKRKEKKLKASARPSSMEM
        TVLNHPVFQADPLRA++LHLEGTQP EEPKKKK NKNGSKKRKEKK  ASARPSSMEM
Subjt:  TVLNHPVFQADPLRAVQLHLEGTQPTEEPKKKKMNKNGSKKRKEKKLKASARPSSMEM

XP_038900086.1 putative ribosome biogenesis protein slx9-like [Benincasa hispida]

9.86e-88

92.41

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Query:  MGKPVSRSDVKSKAERKFEKKVQFYERVGESIATLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMG
        MGKPVSRSD KSKAERKFEKKVQFYERVGE+I+TLNAQK+ITKKK+HRRRKRDLKAFDLSTLSEFLPGLEA KQKPSAAELKLNCKSRLKFILKERKQMG
Subjt:  MGKPVSRSDVKSKAERKFEKKVQFYERVGESIATLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMG

Query:  TVLNHPVFQADPLRAVQLHLEGTQPTEEPKKKKMNKNGSKKRKEKKLKASARPSSMEM
        TVLNHPVFQADPLRA+QLHLEGTQP EEPKKK  NKNGSKKRKEKK KAS RPSSMEM
Subjt:  TVLNHPVFQADPLRAVQLHLEGTQPTEEPKKKKMNKNGSKKRKEKKLKASARPSSMEM

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L113 Uncharacterized protein

6.4e-74

96.84

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Query:  MGKPVSRSDVKSKAERKFEKKVQFYERVGESIATLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMG
        MGKPVSRSDVKSKAERKFEKKVQFYERVGE+I TLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMG
Subjt:  MGKPVSRSDVKSKAERKFEKKVQFYERVGESIATLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMG

Query:  TVLNHPVFQADPLRAVQLHLEGTQPTEEPKKKKMNKNGSKKRKEKKLKASARPSSMEM
        TVLNHPVFQADPLRAVQLHLEGTQP EEPKKKKMNKNGSKKRKEKK KASA+PSSMEM
Subjt:  TVLNHPVFQADPLRAVQLHLEGTQPTEEPKKKKMNKNGSKKRKEKKLKASARPSSMEM

A0A5A7V4K7 Putative ribosome biogenesis protein slx9-like

4.3e-70

96.08

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Query:  SRSDVKSKAERKFEKKVQFYERVGESIATLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMGTVLNH
        ++SDVKSKAERKFEKKVQFYERVGESIATLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMGTVLNH
Subjt:  SRSDVKSKAERKFEKKVQFYERVGESIATLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMGTVLNH

Query:  PVFQADPLRAVQLHLEGTQPTEEPKKKKMNKNGSKKRKEKKLKASARPSSMEM
        PVFQADPLRAVQLHLEGTQP EEPKKKK+NKNGSKKRKEKK KA ARPSSMEM
Subjt:  PVFQADPLRAVQLHLEGTQPTEEPKKKKMNKNGSKKRKEKKLKASARPSSMEM

A0A5D3BQL6 Putative ribosome biogenesis protein slx9-like

1.8e-76

100

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Query:  MGKPVSRSDVKSKAERKFEKKVQFYERVGESIATLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMG
        MGKPVSRSDVKSKAERKFEKKVQFYERVGESIATLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMG
Subjt:  MGKPVSRSDVKSKAERKFEKKVQFYERVGESIATLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMG

Query:  TVLNHPVFQADPLRAVQLHLEGTQPTEEPKKKKMNKNGSKKRKEKKLKASARPSSMEM
        TVLNHPVFQADPLRAVQLHLEGTQPTEEPKKKKMNKNGSKKRKEKKLKASARPSSMEM
Subjt:  TVLNHPVFQADPLRAVQLHLEGTQPTEEPKKKKMNKNGSKKRKEKKLKASARPSSMEM

A0A6J1CZB1 putative ribosome biogenesis protein slx9-like isoform X2

2.6e-59

80.77

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Query:  MGKPVSRSDVKSKAERKFEKKVQFYERVGESIATLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMG
        MGKPVSRSD KSKAERKF+KKVQFYERVGE++  LNAQK+I+K    R RK+ LKAFDL+TLSEFLPGLEA KQK SAAELK+NCKSRLKFILKERKQMG
Subjt:  MGKPVSRSDVKSKAERKFEKKVQFYERVGESIATLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMG

Query:  TVLNHPVFQADPLRAVQLHLEGTQPTEEPKKKKMNKNGSKKRKEKKLKASARPSSM
        TVLNHP FQADPL+A+ LHLE TQP EEPKKK  NKNGSKKRKEKKLKASA P  M
Subjt:  TVLNHPVFQADPLRAVQLHLEGTQPTEEPKKKKMNKNGSKKRKEKKLKASARPSSM

A0A6J1E5M8 putative ribosome biogenesis protein slx9-like

5.8e-59

81.01

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Query:  MGKPVSRSDVKSKAERKFEKKVQFYERVGESIATLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMG
        MGKP SRSD KSKAERKFEKK+QFYERVGE+IATLNAQK+ITKKK  RRRKRDLKAFDL+ LSEFLPGL+A KQK S  ELK+NCKSRLKF+LKE KQMG
Subjt:  MGKPVSRSDVKSKAERKFEKKVQFYERVGESIATLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMG

Query:  TVLNHPVFQADPLRAVQLHLEGTQPTEEPKKKKMNKNGSKKRKEKKLKASARPSSMEM
        TVLNHP FQADPL A+ LHL+ TQP EE KKKK N+NGSKKRKEKK KA+A+PSSMEM
Subjt:  TVLNHPVFQADPLRAVQLHLEGTQPTEEPKKKKMNKNGSKKRKEKKLKASARPSSMEM

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G01640.1 unknown protein

5.1e-31

50.33

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Query:  MGKPVSRSDVKSKAERKFEKKVQFYERVGESIATLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEA-TKQKPSAAELKLNCKSRLKFILKERKQM
        MGKP   S+V +K+++KFEKK+QFY +V +++ +L+ QK I KKK  R R++ LKA+DL+ LSEFLP   A  K    A ELK+NCK R K +L E +++
Subjt:  MGKPVSRSDVKSKAERKFEKKVQFYERVGESIATLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEA-TKQKPSAAELKLNCKSRLKFILKERKQM

Query:  GTVLNHPVFQADPLRAVQLHLEGTQ-PTEEPKKKKMNKNGSKKRKEKKLKASA
          VL+HP FQADP+ ++  HL   Q P EE  KKK N NGSKKR +KK K  +
Subjt:  GTVLNHPVFQADPLRAVQLHLEGTQ-PTEEPKKKKMNKNGSKKRKEKKLKASA

AT2G01640.2 unknown protein

5.1e-31

50.33

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Query:  MGKPVSRSDVKSKAERKFEKKVQFYERVGESIATLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEA-TKQKPSAAELKLNCKSRLKFILKERKQM
        MGKP   S+V +K+++KFEKK+QFY +V +++ +L+ QK I KKK  R R++ LKA+DL+ LSEFLP   A  K    A ELK+NCK R K +L E +++
Subjt:  MGKPVSRSDVKSKAERKFEKKVQFYERVGESIATLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEA-TKQKPSAAELKLNCKSRLKFILKERKQM

Query:  GTVLNHPVFQADPLRAVQLHLEGTQ-PTEEPKKKKMNKNGSKKRKEKKLKASA
          VL+HP FQADP+ ++  HL   Q P EE  KKK N NGSKKR +KK K  +
Subjt:  GTVLNHPVFQADPLRAVQLHLEGTQ-PTEEPKKKKMNKNGSKKRKEKKLKASA

Sequences

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CDS sequence

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ATGGGCAAACCAGTATCCCGGTCGGATGTGAAATCTAAAGCTGAACGCAAATTTGAGAAGAAGGTCCAGTTTTATGAGAGAGTTGGAGAAAGTATTGCTACCTTGAATGC
TCAAAAGAGTATAACCAAGAAGAAAAACCATCGTAGACGTAAAAGAGACTTGAAGGCTTTTGATCTTTCTACACTGTCAGAGTTTCTTCCTGGATTGGAGGCGACAAAAC
AAAAACCCTCCGCAGCAGAGTTAAAACTAAATTGCAAGTCTAGGCTAAAGTTCATATTGAAGGAGAGAAAGCAAATGGGTACTGTTCTTAATCACCCTGTGTTTCAGGCA
GACCCATTGAGAGCTGTTCAGCTACATTTAGAGGGCACACAACCAACTGAGGAACCGAAGAAAAAAAAGATGAATAAAAATGGAAGCAAGAAAAGGAAAGAGAAGAAGTT
GAAAGCCTCGGCAAGACCTTCATCTATGGAGATGTGA

mRNA sequence

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Protein sequence

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MGKPVSRSDVKSKAERKFEKKVQFYERVGESIATLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMGTVLNHPVFQA
DPLRAVQLHLEGTQPTEEPKKKKMNKNGSKKRKEKKLKASARPSSMEM

IVF0015300 (gene) of Melon (IVF77) v1 genome