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IVF0015327 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0015327
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionTransposon Ty3-G Gag-Pol polyprotein
Genome locationchr08:29381530..29382199
RNA-Seq ExpressionIVF0015327
SyntenyIVF0015327
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032067.1 reverse transcriptase [Cucumis melo var. makuwa]3.26e-0686.67Show/hide
Query:  LLNIHQEPQRRLDFRPYFQEDQEIRMKVDL
        LLNIHQ+PQR L  RPYFQEDQEIRMKVDL
Subjt:  LLNIHQEPQRRLDFRPYFQEDQEIRMKVDL
KAA0038343.1 uncharacterized protein E6C27_scaffold270G002190 [Cucumis melo var. makuwa]1.01e-1082.5Show/hide
Query:  DDSNSSDEDNLLNIHQEPQRRLDFRPYFQEDQEIRMKVDL
        DDS+SSDEDNLLNIHQEPQR +  RPY QEDQEI MKVDL
Subjt:  DDSNSSDEDNLLNIHQEPQRRLDFRPYFQEDQEIRMKVDL
KAA0045133.1 hypothetical protein E6C27_scaffold30G001320 [Cucumis melo var. makuwa]3.92e-61100Show/hide
Query:  MQQSIVDLTNLFTRIHVQPLGEAIQPPRNQAAANQEHPRDQAVHIHNNQLYGNNLSGYLLDDSNSSDEDNLLNIHQEPQRRLDFRPYFQEDQEIRMK
        MQQSIVDLTNLFTRIHVQPLGEAIQPPRNQAAANQEHPRDQAVHIHNNQLYGNNLSGYLLDDSNSSDEDNLLNIHQEPQRRLDFRPYFQEDQEIRMK
Subjt:  MQQSIVDLTNLFTRIHVQPLGEAIQPPRNQAAANQEHPRDQAVHIHNNQLYGNNLSGYLLDDSNSSDEDNLLNIHQEPQRRLDFRPYFQEDQEIRMK
KAA0058889.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]1.53e-1085Show/hide
Query:  DDSNSSDEDNLLNIHQEPQRRLDFRPYFQEDQEIRMKVDL
        D+S+SSDEDNLLNIHQEPQR L F PY QEDQEIRMKVDL
Subjt:  DDSNSSDEDNLLNIHQEPQRRLDFRPYFQEDQEIRMKVDL
XP_031745730.1 uncharacterized protein LOC116406187 [Cucumis sativus]5.98e-2474.29Show/hide
Query:  AAANQEHPRDQAVHIHNNQLYGNNLSGYLLDDSNSSDEDNLLNIHQEPQRRLDFRPYFQEDQEIRMKVDL
        +  NQE  R+Q +HIHNN+LYGNN+ G  L DS+SSDEDNLLNIHQEPQ+RL  RPYFQEDQEIRMKVDL
Subjt:  AAANQEHPRDQAVHIHNNQLYGNNLSGYLLDDSNSSDEDNLLNIHQEPQRRLDFRPYFQEDQEIRMKVDL
TrEMBL top hitse value%identityAlignment
A0A5D3BB35 CCHC-type domain-containing protein6.0e-0882.5Show/hide
Query:  DDSNSSDEDNLLNIHQEPQRRLDFRPYFQEDQEIRMKVDL
        DDS+SSDEDNLLNIHQEPQR +  RPY QEDQEI MKVDL
Subjt:  DDSNSSDEDNLLNIHQEPQRRLDFRPYFQEDQEIRMKVDL
A0A5D3CPS9 Reverse transcriptase2.3e-0486.67Show/hide
Query:  LLNIHQEPQRRLDFRPYFQEDQEIRMKVDL
        LLNIHQ+PQR L  RPYFQEDQEIRMKVDL
Subjt:  LLNIHQEPQRRLDFRPYFQEDQEIRMKVDL
A0A5D3DIZ0 Uncharacterized protein5.0e-47100Show/hide
Query:  MQQSIVDLTNLFTRIHVQPLGEAIQPPRNQAAANQEHPRDQAVHIHNNQLYGNNLSGYLLDDSNSSDEDNLLNIHQEPQRRLDFRPYFQEDQEIRMK
        MQQSIVDLTNLFTRIHVQPLGEAIQPPRNQAAANQEHPRDQAVHIHNNQLYGNNLSGYLLDDSNSSDEDNLLNIHQEPQRRLDFRPYFQEDQEIRMK
Subjt:  MQQSIVDLTNLFTRIHVQPLGEAIQPPRNQAAANQEHPRDQAVHIHNNQLYGNNLSGYLLDDSNSSDEDNLLNIHQEPQRRLDFRPYFQEDQEIRMK
A0A5D3DJC1 Transposon Ty3-G Gag-Pol polyprotein2.7e-0885Show/hide
Query:  DDSNSSDEDNLLNIHQEPQRRLDFRPYFQEDQEIRMKVDL
        D+S+SSDEDNLLNIHQEPQR L F PY QEDQEIRMKVDL
Subjt:  DDSNSSDEDNLLNIHQEPQRRLDFRPYFQEDQEIRMKVDL
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAACAATCAATAGTAGATTTGACTAACCTCTTCACTCGAATTCATGTACAACCTTTAGGAGAAGCAATTCAACCTCCAAGAAACCAAGCTGCGGCAAATCAAGAACA
TCCAAGAGACCAAGCTGTTCACATCCACAACAATCAACTATATGGAAACAACTTATCGGGCTACTTATTGGATGATTCCAACTCTTCTGATGAAGACAACTTGCTGAATA
TTCATCAAGAACCGCAAAGAAGACTCGATTTTCGACCATATTTCCAAGAAGATCAAGAAATAAGAATGAAGGTGGATCTTCTACTTTCAATGGCCGAATGGATGTGGAAA
AATTTCTTGATTGAATCAAGAATGTAG
mRNA sequenceShow/hide mRNA sequence
ATGCAACAATCAATAGTAGATTTGACTAACCTCTTCACTCGAATTCATGTACAACCTTTAGGAGAAGCAATTCAACCTCCAAGAAACCAAGCTGCGGCAAATCAAGAACA
TCCAAGAGACCAAGCTGTTCACATCCACAACAATCAACTATATGGAAACAACTTATCGGGCTACTTATTGGATGATTCCAACTCTTCTGATGAAGACAACTTGCTGAATA
TTCATCAAGAACCGCAAAGAAGACTCGATTTTCGACCATATTTCCAAGAAGATCAAGAAATAAGAATGAAGGTGGATCTTCTACTTTCAATGGCCGAATGGATGTGGAAA
AATTTCTTGATTGAATCAAGAATGTAGAATTTTTTTTTAACTACGCCAATACCCCAGAACACAAGAAAGTTCGGTTGGTGGCCTTCAAGCTCCAAGGTGGCGCTAGTGCT
TGGTGGGATCAACTTCAAAATAACAGGCGGCTATTTGGTAAACTACCTATTAGAAGGTGGCCAAAGATGCTAAGGCTCATGAAAAAACGATTTCTACCAATCAACCAATC
TACAATCAATATCAACAATGTCACCAAGGCTCTCGAAATATCATAGACCACACAGAAGAGTTTTATAGACTTGGCGCTTGTAACAATCTTTCTGAAACTGAACACCAACA
AGTTTCTAGA
Protein sequenceShow/hide protein sequence
MQQSIVDLTNLFTRIHVQPLGEAIQPPRNQAAANQEHPRDQAVHIHNNQLYGNNLSGYLLDDSNSSDEDNLLNIHQEPQRRLDFRPYFQEDQEIRMKVDLLLSMAEWMWK
NFLIESRM