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IVF0015370 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0015370
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionBHLH domain-containing protein
Genome locationchr12:23984957..23985364
RNA-Seq ExpressionIVF0015370
SyntenyIVF0015370
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0040008 - regulation of growth (biological process)
GO:0005634 - nucleus (cellular component)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR011598 - Myc-type, basic helix-loop-helix (bHLH) domain
IPR036638 - Helix-loop-helix DNA-binding domain superfamily
IPR044293 - Transcription factor PRE


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7012197.1 Transcription factor PRE3, partial [Cucurbita argyrosperma subsp. argyrosperma]7.59e-5197.78Show/hide
Query:  MSGRSRSRQSSGVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
        MSGRSRSRQSS VRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELL TSDTAQAAIIRSLLTQ
Subjt:  MSGRSRSRQSSGVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ

XP_004152438.1 transcription factor PRE3 [Cucumis sativus]1.86e-5198.89Show/hide
Query:  MSGRSRSRQSSGVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
        MSGRSRSRQSS VRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
Subjt:  MSGRSRSRQSSGVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ

XP_016899225.1 PREDICTED: transcription factor PRE3-like [Cucumis melo]2.26e-52100Show/hide
Query:  MSGRSRSRQSSGVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
        MSGRSRSRQSSGVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
Subjt:  MSGRSRSRQSSGVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ

XP_022955105.1 transcription factor PRE3-like [Cucurbita moschata]1.86e-5198.89Show/hide
Query:  MSGRSRSRQSSGVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
        MSGRSRSRQSS VRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
Subjt:  MSGRSRSRQSSGVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ

XP_023542851.1 transcription factor PRE3-like [Cucurbita pepo subsp. pepo]2.64e-5197.78Show/hide
Query:  MSGRSRSRQSSGVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
        MSGRSRSRQSS +RISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
Subjt:  MSGRSRSRQSSGVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ

TrEMBL top hitse value%identityAlignment
A0A0A0LQQ1 BHLH domain-containing protein9.4e-3898.89Show/hide
Query:  MSGRSRSRQSSGVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
        MSGRSRSRQSS VRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
Subjt:  MSGRSRSRQSSGVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ

A0A1S4DU40 transcription factor PRE3-like1.9e-38100Show/hide
Query:  MSGRSRSRQSSGVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
        MSGRSRSRQSSGVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
Subjt:  MSGRSRSRQSSGVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ

A0A5D3BJ22 Transcription factor PRE3-like3.0e-36100Show/hide
Query:  SRSRQSSGVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
        SRSRQSSGVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
Subjt:  SRSRQSSGVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ

A0A6J1GU92 transcription factor PRE3-like9.4e-3898.89Show/hide
Query:  MSGRSRSRQSSGVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
        MSGRSRSRQSS VRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
Subjt:  MSGRSRSRQSSGVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ

A0A6J1K5U5 transcription factor PRE3-like8.0e-3797.78Show/hide
Query:  MSGRSRSRQSSGVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
        MSG SRSRQSS VRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
Subjt:  MSGRSRSRQSSGVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ

SwissProt top hitse value%identityAlignment
A2Z730 Transcription factor ILI76.1e-2673.33Show/hide
Query:  MSGRSRSRQSSGVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELLATSD--TAQAAIIRSLL
        MS RSRSR SS  RI+DEQI DLV KLQ LLPE R R +D+V +A+VLQETC+YIRSLHREVDDLSERL+ELLA +D  TAQAA+IR LL
Subjt:  MSGRSRSRQSSGVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELLATSD--TAQAAIIRSLL

B8APB5 Transcription factor ILI69.4e-2776.4Show/hide
Query:  SGRSRSRQSSGVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELLATSD--TAQAAIIRSLL
        S RSRSRQS   RI+DEQI+DLV KLQ LLPE R R +D+V +++VLQETCNYIRSLH+EVDDLSERLSELLATSD  +AQAAIIRSLL
Subjt:  SGRSRSRQSSGVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELLATSD--TAQAAIIRSLL

Q0DUR2 Transcription factor ILI69.4e-2776.4Show/hide
Query:  SGRSRSRQSSGVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELLATSD--TAQAAIIRSLL
        S RSRSRQS   RI+DEQI+DLV KLQ LLPE R R +D+V +++VLQETCNYIRSLH+EVDDLSERLSELLATSD  +AQAAIIRSLL
Subjt:  SGRSRSRQSSGVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELLATSD--TAQAAIIRSLL

Q8GW32 Transcription factor PRE63.2e-2775Show/hide
Query:  MSGR--SRSRQSSGVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELLATSD--TAQAAIIRSLL
        MS R  SRSRQS   RISD+QI+DLV KLQ L+PE+R R SDKVSA+KVLQETCNYIR+LHREVDDLS+RLSELLA++D  +A+AAIIRSLL
Subjt:  MSGR--SRSRQSSGVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELLATSD--TAQAAIIRSLL

Q9CA64 Transcription factor PRE35.3e-3081.72Show/hide
Query:  MSG-RSRSRQSSGV-RISDEQITDLVHKLQQLLPEIR-NRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
        MSG RSRSRQSSG  RIS++QI DL+ KLQQLLPE+R +R SDKVSAA+VLQ+TCNYIR+LHREVDDLSERLSELLA SDTAQAA+IRSLLTQ
Subjt:  MSG-RSRSRQSSGV-RISDEQITDLVHKLQQLLPEIR-NRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ

Arabidopsis top hitse value%identityAlignment
AT1G26945.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein2.3e-2875Show/hide
Query:  MSGR--SRSRQSSGVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELLATSD--TAQAAIIRSLL
        MS R  SRSRQS   RISD+QI+DLV KLQ L+PE+R R SDKVSA+KVLQETCNYIR+LHREVDDLS+RLSELLA++D  +A+AAIIRSLL
Subjt:  MSGR--SRSRQSSGVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELLATSD--TAQAAIIRSLL

AT1G74500.1 activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 13.8e-3181.72Show/hide
Query:  MSG-RSRSRQSSGV-RISDEQITDLVHKLQQLLPEIR-NRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
        MSG RSRSRQSSG  RIS++QI DL+ KLQQLLPE+R +R SDKVSAA+VLQ+TCNYIR+LHREVDDLSERLSELLA SDTAQAA+IRSLLTQ
Subjt:  MSG-RSRSRQSSGV-RISDEQITDLVHKLQQLLPEIR-NRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ

AT3G28857.1 basic helix-loop-helix (bHLH) DNA-binding family protein5.5e-2263.74Show/hide
Query:  MSGRSRSRQSSGVRISDEQITDLVHKLQQLLPEI-RNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELL--ATSDTAQAAIIRSLL
        MS R   + S+  RISD+Q+ DLV KL+Q LPEI   R SDKVSA+KVLQETCNYIR LHREVD+LS+RLS+LL     D+ +AA+IRSLL
Subjt:  MSGRSRSRQSSGVRISDEQITDLVHKLQQLLPEI-RNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELL--ATSDTAQAAIIRSLL

AT3G47710.1 BANQUO 31.3e-2365.56Show/hide
Query:  SGRSRSRQSSGVRISDEQITDLVHKLQQLLPEI-RNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
        S +SRSRQ+    I+DEQI DLV +L +LLPE+  NR S KVSA++VLQETC+YIR+L +EVDDLSERLS+LL ++D+AQAA+IRSLL Q
Subjt:  SGRSRSRQSSGVRISDEQITDLVHKLQQLLPEI-RNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ

AT5G39860.1 basic helix-loop-helix (bHLH) DNA-binding family protein7.2e-2263.74Show/hide
Query:  MSGRSRSRQSSGVRISDEQITDLVHKLQQLLPEI-RNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELLAT--SDTAQAAIIRSLL
        MS R   + SS  RISD Q+ DLV KL+Q+LPEI + R SDK SA+KVLQETCNYIR+L+REVD+LSERLS+LL +   D+ +AA+IRSLL
Subjt:  MSGRSRSRQSSGVRISDEQITDLVHKLQQLLPEI-RNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELLAT--SDTAQAAIIRSLL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGGTAGATCTCGTTCAAGACAGTCAAGTGGTGTAAGAATCAGCGACGAGCAAATCACTGATCTTGTTCACAAATTGCAGCAACTCTTGCCTGAGATTCGTAATCG
TCACTCAGACAAGGTTTCAGCAGCAAAGGTTTTGCAAGAGACATGCAATTACATTAGAAGCTTACACAGAGAAGTGGATGATTTGAGTGAGAGGCTCTCGGAGTTGTTGG
CCACATCGGACACAGCTCAAGCCGCCATTATTAGAAGCTTGCTCACTCAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCTGGTAGATCTCGTTCAAGACAGTCAAGTGGTGTAAGAATCAGCGACGAGCAAATCACTGATCTTGTTCACAAATTGCAGCAACTCTTGCCTGAGATTCGTAATCG
TCACTCAGACAAGGTTTCAGCAGCAAAGGTTTTGCAAGAGACATGCAATTACATTAGAAGCTTACACAGAGAAGTGGATGATTTGAGTGAGAGGCTCTCGGAGTTGTTGG
CCACATCGGACACAGCTCAAGCCGCCATTATTAGAAGCTTGCTCACTCAGTGA
Protein sequenceShow/hide protein sequence
MSGRSRSRQSSGVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ