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IVF0015382 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0015382
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionTransposon Ty3-I Gag-Pol polyprotein
Genome locationchr08:23909372..23910261
RNA-Seq ExpressionIVF0015382
SyntenyIVF0015382
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025749.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]4.91e-45100Show/hide
Query:  MEAESSNSKKNEASKEEKEKSNSVQCWKCKGFGHMSKDCVNKKVMVIRNGIIDSKDECDEHDAPLEEESDAHDDEYIEG
        MEAESSNSKKNEASKEEKEKSNSVQCWKCKGFGHMSKDCVNKKVMVIRNGIIDSKDECDEHDAPLEEESDAHDDEYIEG
Subjt:  MEAESSNSKKNEASKEEKEKSNSVQCWKCKGFGHMSKDCVNKKVMVIRNGIIDSKDECDEHDAPLEEESDAHDDEYIEG

KGN53753.1 hypothetical protein Csa_014547 [Cucumis sativus]1.58e-3583.33Show/hide
Query:  MEAESSNSKKNEASKEEKEKSNSVQCWKCKGFGHMSKDCVNKKVMVIRNGIIDSKDECDEHDAPLEEESDAHDDEYIE
        ME ESSN+K N+ SKE KEKS+S++CWKCKG GHMSKD VNKKVMVIRN IIDSK+ECDEHDAPLEEESDAHDDEYIE
Subjt:  MEAESSNSKKNEASKEEKEKSNSVQCWKCKGFGHMSKDCVNKKVMVIRNGIIDSKDECDEHDAPLEEESDAHDDEYIE

TYK06180.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]1.61e-4398.73Show/hide
Query:  MEAESSNSKKNEASKEEKEKSNSVQCWKCKGFGHMSKDCVNKKVMVIRNGIIDSKDECDEHDAPLEEESDAHDDEYIEG
        MEAESSNSKKNEASKEEKEKSNSVQCWKCKGFGHMSKDCVNKKVMVIRNGIIDSKDE DEHDAPLEEESDAHDDEYIEG
Subjt:  MEAESSNSKKNEASKEEKEKSNSVQCWKCKGFGHMSKDCVNKKVMVIRNGIIDSKDECDEHDAPLEEESDAHDDEYIEG

XP_023520950.1 uncharacterized protein LOC111784506, partial [Cucurbita pepo subsp. pepo]2.08e-2875.64Show/hide
Query:  MEAESSNSKKNEASKEEKEKSNSVQCWKCKGFGHMSKDCVNKKVMVIRNGIIDSKDECDEHDAPLEEESDAHDDEYIE
        +EAESS  KKNEASK  KEKS+S+QCWKCKGFGHMSK+CVNKKVMVIRNGI+DS DEC++HD+ L EE  A+DDEY+E
Subjt:  MEAESSNSKKNEASKEEKEKSNSVQCWKCKGFGHMSKDCVNKKVMVIRNGIIDSKDECDEHDAPLEEESDAHDDEYIE

XP_038902315.1 LOW QUALITY PROTEIN: uncharacterized protein LOC120088948 [Benincasa hispida]2.53e-2879.49Show/hide
Query:  MEAESSNSKKNEASKEEKEKSNSVQCWKCKGFGHMSKDCVNKKVMVIRNGIIDSKDECDEHDAPLEEESDAHDDEYIE
        +EA S+ +KKNEASKEE+EKSNS QCWKCKGFGHMSKDCVNKKVMVIRNGIID +DECDE    L+EES A DDEYIE
Subjt:  MEAESSNSKKNEASKEEKEKSNSVQCWKCKGFGHMSKDCVNKKVMVIRNGIIDSKDECDEHDAPLEEESDAHDDEYIE

TrEMBL top hitse value%identityAlignment
A0A0A0KW07 Uncharacterized protein4.5e-2683.33Show/hide
Query:  MEAESSNSKKNEASKEEKEKSNSVQCWKCKGFGHMSKDCVNKKVMVIRNGIIDSKDECDEHDAPLEEESDAHDDEYIE
        ME ESSN+K N+ SKE KEKS+S++CWKCKG GHMSKD VNKKVMVIRN IIDSK+ECDEHDAPLEEESDAHDDEYIE
Subjt:  MEAESSNSKKNEASKEEKEKSNSVQCWKCKGFGHMSKDCVNKKVMVIRNGIIDSKDECDEHDAPLEEESDAHDDEYIE

A0A5A7SKE7 Transposon Ty3-I Gag-Pol polyprotein1.2e-34100Show/hide
Query:  MEAESSNSKKNEASKEEKEKSNSVQCWKCKGFGHMSKDCVNKKVMVIRNGIIDSKDECDEHDAPLEEESDAHDDEYIEG
        MEAESSNSKKNEASKEEKEKSNSVQCWKCKGFGHMSKDCVNKKVMVIRNGIIDSKDECDEHDAPLEEESDAHDDEYIEG
Subjt:  MEAESSNSKKNEASKEEKEKSNSVQCWKCKGFGHMSKDCVNKKVMVIRNGIIDSKDECDEHDAPLEEESDAHDDEYIEG

A0A5A7UEI2 Transposon Ty3-I Gag-Pol polyprotein6.7e-2272.15Show/hide
Query:  MEAESSNSKKNEASKEEKEKSNSVQCWKCKGFGHMSKDCVNKKVMVIRNGIIDSKDECDEHDAPLEEESDAH-DDEYIE
        +E ESSN+KK EASKE +EK++S+QCWKCKGFGHMSKDC+NK+VMV+RNG+IDS+DEC+E+DA LEEE +   DDEYIE
Subjt:  MEAESSNSKKNEASKEEKEKSNSVQCWKCKGFGHMSKDCVNKKVMVIRNGIIDSKDECDEHDAPLEEESDAH-DDEYIE

A0A5D3C4C3 Transposon Ty3-I Gag-Pol polyprotein1.7e-3398.73Show/hide
Query:  MEAESSNSKKNEASKEEKEKSNSVQCWKCKGFGHMSKDCVNKKVMVIRNGIIDSKDECDEHDAPLEEESDAHDDEYIEG
        MEAESSNSKKNEASKEEKEKSNSVQCWKCKGFGHMSKDCVNKKVMVIRNGIIDSKDE DEHDAPLEEESDAHDDEYIEG
Subjt:  MEAESSNSKKNEASKEEKEKSNSVQCWKCKGFGHMSKDCVNKKVMVIRNGIIDSKDECDEHDAPLEEESDAHDDEYIEG

A0A5D3CCP8 CCHC-type domain-containing protein6.7e-2272.15Show/hide
Query:  MEAESSNSKKNEASKEEKEKSNSVQCWKCKGFGHMSKDCVNKKVMVIRNGIIDSKDECDEHDAPLEEESDAH-DDEYIE
        +E ESSN+KK EASKE +EK++S+QCWKCKGFGHMSKDC+NK+VMV+RNG+IDS+DEC+E+DA LEEE +   DDEYIE
Subjt:  MEAESSNSKKNEASKEEKEKSNSVQCWKCKGFGHMSKDCVNKKVMVIRNGIIDSKDECDEHDAPLEEESDAH-DDEYIE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGCCGAGAGCTCCAACAGTAAAAAGAATGAAGCTTCAAAAGAGGAAAAGGAGAAGTCTAATTCCGTTCAATGTTGGAAATGCAAAGGGTTTGGACACATGAGCAA
AGATTGTGTTAATAAAAAAGTCATGGTGATAAGAAATGGGATAATTGATTCAAAAGACGAATGTGATGAGCATGATGCACCACTTGAGGAAGAATCTGATGCACATGATG
ATGAGTACATTGAAGGAGAAAGAAGGATGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAAGCCGAGAGCTCCAACAGTAAAAAGAATGAAGCTTCAAAAGAGGAAAAGGAGAAGTCTAATTCCGTTCAATGTTGGAAATGCAAAGGGTTTGGACACATGAGCAA
AGATTGTGTTAATAAAAAAGTCATGGTGATAAGAAATGGGATAATTGATTCAAAAGACGAATGTGATGAGCATGATGCACCACTTGAGGAAGAATCTGATGCACATGATG
ATGAGTACATTGAAGGAGAAAGAAGGATGTAG
Protein sequenceShow/hide protein sequence
MEAESSNSKKNEASKEEKEKSNSVQCWKCKGFGHMSKDCVNKKVMVIRNGIIDSKDECDEHDAPLEEESDAHDDEYIEGERRM