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IVF0015419 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0015419
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein, putative, Ty1-copia subclass, expressed
Genome locationchr03:2335164..2335501
RNA-Seq ExpressionIVF0015419
SyntenyIVF0015419
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK07960.1 retrotransposon protein, putative, Ty1-copia subclass, expressed [Cucumis melo var. makuwa]4.61e-0740.91Show/hide
Query:  YRSSFRVRATA----GRNVAARR-----------WFAGGGDAGPTRVSLGNSRQGGSSFDPRRMVAGEAQTRRVVNGDAASGERRHGEWRLLVKARMGYG
        + SSFRVRATA    GR+    R           W    G  G      G  R  G     R + +G     R+ +GDA SG RRH EW+L V+ARMGYG
Subjt:  YRSSFRVRATA----GRNVAARR-----------WFAGGGDAGPTRVSLGNSRQGGSSFDPRRMVAGEAQTRRVVNGDAASGERRHGEWRLLVKARMGYG

Query:  DRQQRSTVAV
        DRQ+R   AV
Subjt:  DRQQRSTVAV

TrEMBL top hitse value%identityAlignment
A0A5D3C9F5 Retrotransposon protein, putative, Ty1-copia subclass, expressed1.1e-0440.91Show/hide
Query:  YRSSFRVRATA----GRNVAARR-----------WFAGGGDAGPTRVSLGNSRQGGSSFDPRRMVAGEAQTRRVVNGDAASGERRHGEWRLLVKARMGYG
        + SSFRVRATA    GR+    R           W    G  G      G  R  G     R + +G     R+ +GDA SG RRH EW+L V+ARMGYG
Subjt:  YRSSFRVRATA----GRNVAARR-----------WFAGGGDAGPTRVSLGNSRQGGSSFDPRRMVAGEAQTRRVVNGDAASGERRHGEWRLLVKARMGYG

Query:  DRQQRSTVAV
        DRQ+R   AV
Subjt:  DRQQRSTVAV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTACAGGTCGAGCTTCCGGGTTCGGGCGACAGCGGGACGAAACGTGGCTGCTCGACGATGGTTTGCAGGCGGAGGAGATGCGGGTCCGACAAGAGTTTCGCTTGGGAA
CAGTCGGCAGGGTGGGTCGAGTTTCGATCCACGAAGAATGGTGGCTGGAGAGGCGCAGACGCGGCGAGTGGTGAACGGAGACGCGGCGAGTGGCGAACGGAGACACGGCG
AGTGGCGGCTGCTTGTGAAGGCTCGAATGGGTTACGGCGATCGACAGCAGCGGTCGACGGTGGCGGTAGCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTACAGGTCGAGCTTCCGGGTTCGGGCGACAGCGGGACGAAACGTGGCTGCTCGACGATGGTTTGCAGGCGGAGGAGATGCGGGTCCGACAAGAGTTTCGCTTGGGAA
CAGTCGGCAGGGTGGGTCGAGTTTCGATCCACGAAGAATGGTGGCTGGAGAGGCGCAGACGCGGCGAGTGGTGAACGGAGACGCGGCGAGTGGCGAACGGAGACACGGCG
AGTGGCGGCTGCTTGTGAAGGCTCGAATGGGTTACGGCGATCGACAGCAGCGGTCGACGGTGGCGGTAGCCTAG
Protein sequenceShow/hide protein sequence
MYRSSFRVRATAGRNVAARRWFAGGGDAGPTRVSLGNSRQGGSSFDPRRMVAGEAQTRRVVNGDAASGERRHGEWRLLVKARMGYGDRQQRSTVAVA