; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0015501 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0015501
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRRM domain-containing protein
Genome locationchr10:2626146..2627657
RNA-Seq ExpressionIVF0015501
SyntenyIVF0015501
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK15537.1 thaumatin-like protein 1 [Cucumis melo var. makuwa]3.40e-126100Show/hide
Query:  MGRKRDKPYPSSHLPTSAAKRRRPPPSTVDDDLEKPVSKPAPPLALVVVDLPSQCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTAALD
        MGRKRDKPYPSSHLPTSAAKRRRPPPSTVDDDLEKPVSKPAPPLALVVVDLPSQCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTAALD
Subjt:  MGRKRDKPYPSSHLPTSAAKRRRPPPSTVDDDLEKPVSKPAPPLALVVVDLPSQCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTAALD

Query:  PSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIVNPRRSNSSSRSDVPFRGREVVAYDDIL
        PSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIVNPRRSNSSSRSDVPFRGREVVAYDDIL
Subjt:  PSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIVNPRRSNSSSRSDVPFRGREVVAYDDIL
XP_008446301.1 PREDICTED: uncharacterized protein At1g27050 [Cucumis melo]4.04e-130100Show/hide
Query:  MGRKRDKPYPSSHLPTSAAKRRRPPPSTVDDDLEKPVSKPAPPLALVVVDLPSQCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTAALD
        MGRKRDKPYPSSHLPTSAAKRRRPPPSTVDDDLEKPVSKPAPPLALVVVDLPSQCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTAALD
Subjt:  MGRKRDKPYPSSHLPTSAAKRRRPPPSTVDDDLEKPVSKPAPPLALVVVDLPSQCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTAALD

Query:  PSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIVNPRRSNSSSRSDVPFRGREVVAYDDIL
        PSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIVNPRRSNSSSRSDVPFRGREVVAYDDIL
Subjt:  PSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIVNPRRSNSSSRSDVPFRGREVVAYDDIL
XP_011655662.1 uncharacterized protein At1g27050 [Cucumis sativus]3.72e-12697.37Show/hide
Query:  MGRKRDKPYPSSHLPTSAAKRRRPPPSTVDDDLEKPVSKPAPPLALVVVDLPSQCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTAALD
        MGRKRDKPYPSSHLPTSA KRRRPPPST +DDLEKPVSKPAPPLALVVVDLPS CSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTAALD
Subjt:  MGRKRDKPYPSSHLPTSAAKRRRPPPSTVDDDLEKPVSKPAPPLALVVVDLPSQCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTAALD

Query:  PSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIVNPRRSNSSSRSDVPFRGREVVAYDDIL
        PSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLAS IVNPRRSNSSSRSDVPFRGREVVAYDDIL
Subjt:  PSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIVNPRRSNSSSRSDVPFRGREVVAYDDIL
XP_023000221.1 uncharacterized protein At1g27050 [Cucurbita maxima]3.19e-11287.63Show/hide
Query:  MGRKRDKPYPSSHLPTSAAKRRR-PPPSTV---DDDLEKPVSKPAPPLALVVVDLPSQCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMT
        MGRKRDKPYPS+H  TS AKRRR  PP+++   DDD++KP+ KPAPPLALVVVDLPS CSVLDLKSRFEIYGSISRIRIDRDCVGYI YRTKDSADAAM 
Subjt:  MGRKRDKPYPSSHLPTSAAKRRR-PPPSTV---DDDLEKPVSKPAPPLALVVVDLPSQCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMT

Query:  AALDPSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIVNPRRSNSSSRSDVPFRGREVVAYDDIL
        AALDPSF FTIDSKKVQVLWANDPQVQWRQGINVGVNKNKE+SSKLLRAEVPLSRHGR NKLASTIVNPR+SNSSSRSD PFRGREVVAYDDIL
Subjt:  AALDPSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIVNPRRSNSSSRSDVPFRGREVVAYDDIL
XP_038892024.1 uncharacterized protein At1g27050 [Benincasa hispida]1.61e-12192.78Show/hide
Query:  MGRKRDKPYPSSHLPTSAAKRRRPPPS----TVDDDLEKPVSKPAPPLALVVVDLPSQCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMT
        MGRKRDKPYPSSHLPTS AKRRRPPP     T D+D++KP+SKPAPPLALVVVDLPS CSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAM 
Subjt:  MGRKRDKPYPSSHLPTSAAKRRRPPPS----TVDDDLEKPVSKPAPPLALVVVDLPSQCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMT

Query:  AALDPSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIVNPRRSNSSSRSDVPFRGREVVAYDDIL
        AALDPSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGR NKLASTIVNPRRSNSSSRSDVPFRGREVVAYDDIL
Subjt:  AALDPSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIVNPRRSNSSSRSDVPFRGREVVAYDDIL
TrEMBL top hitse value%identityAlignment
A0A0A0KTW9 RRM domain-containing protein1.9e-9697.37Show/hide
Query:  MGRKRDKPYPSSHLPTSAAKRRRPPPSTVDDDLEKPVSKPAPPLALVVVDLPSQCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTAALD
        MGRKRDKPYPSSHLPTSA KRRRPPPST +DDLEKPVSKPAPPLALVVVDLPS CSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTAALD
Subjt:  MGRKRDKPYPSSHLPTSAAKRRRPPPSTVDDDLEKPVSKPAPPLALVVVDLPSQCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTAALD

Query:  PSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIVNPRRSNSSSRSDVPFRGREVVAYDDIL
        PSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLAS IVNPRRSNSSSRSDVPFRGREVVAYDDIL
Subjt:  PSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIVNPRRSNSSSRSDVPFRGREVVAYDDIL
A0A1S3BE88 uncharacterized protein At1g270501.8e-99100Show/hide
Query:  MGRKRDKPYPSSHLPTSAAKRRRPPPSTVDDDLEKPVSKPAPPLALVVVDLPSQCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTAALD
        MGRKRDKPYPSSHLPTSAAKRRRPPPSTVDDDLEKPVSKPAPPLALVVVDLPSQCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTAALD
Subjt:  MGRKRDKPYPSSHLPTSAAKRRRPPPSTVDDDLEKPVSKPAPPLALVVVDLPSQCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTAALD

Query:  PSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIVNPRRSNSSSRSDVPFRGREVVAYDDIL
        PSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIVNPRRSNSSSRSDVPFRGREVVAYDDIL
Subjt:  PSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIVNPRRSNSSSRSDVPFRGREVVAYDDIL
A0A5A7STE1 Homeobox-leucine zipper protein ATHB-541.8e-99100Show/hide
Query:  MGRKRDKPYPSSHLPTSAAKRRRPPPSTVDDDLEKPVSKPAPPLALVVVDLPSQCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTAALD
        MGRKRDKPYPSSHLPTSAAKRRRPPPSTVDDDLEKPVSKPAPPLALVVVDLPSQCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTAALD
Subjt:  MGRKRDKPYPSSHLPTSAAKRRRPPPSTVDDDLEKPVSKPAPPLALVVVDLPSQCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTAALD

Query:  PSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIVNPRRSNSSSRSDVPFRGREVVAYDDIL
        PSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIVNPRRSNSSSRSDVPFRGREVVAYDDIL
Subjt:  PSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIVNPRRSNSSSRSDVPFRGREVVAYDDIL
A0A5D3CUC0 Thaumatin-like protein 11.8e-99100Show/hide
Query:  MGRKRDKPYPSSHLPTSAAKRRRPPPSTVDDDLEKPVSKPAPPLALVVVDLPSQCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTAALD
        MGRKRDKPYPSSHLPTSAAKRRRPPPSTVDDDLEKPVSKPAPPLALVVVDLPSQCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTAALD
Subjt:  MGRKRDKPYPSSHLPTSAAKRRRPPPSTVDDDLEKPVSKPAPPLALVVVDLPSQCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTAALD

Query:  PSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIVNPRRSNSSSRSDVPFRGREVVAYDDIL
        PSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIVNPRRSNSSSRSDVPFRGREVVAYDDIL
Subjt:  PSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIVNPRRSNSSSRSDVPFRGREVVAYDDIL
A0A6J1KFA1 uncharacterized protein At1g270506.7e-8687.63Show/hide
Query:  MGRKRDKPYPSSHLPTSAAKRRR-PPPSTV---DDDLEKPVSKPAPPLALVVVDLPSQCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMT
        MGRKRDKPYPS+H  TS AKRRR  PP+++   DDD++KP+ KPAPPLALVVVDLPS CSVLDLKSRFEIYGSISRIRIDRDCVGYI YRTKDSADAAM 
Subjt:  MGRKRDKPYPSSHLPTSAAKRRR-PPPSTV---DDDLEKPVSKPAPPLALVVVDLPSQCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMT

Query:  AALDPSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIVNPRRSNSSSRSDVPFRGREVVAYDDIL
        AALDPSF FTIDSKKVQVLWANDPQVQWRQGINVGVNKNKE+SSKLLRAEVPLSRHGR NKLASTIVNPR+SNSSSRSD PFRGREVVAYDDIL
Subjt:  AALDPSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIVNPRRSNSSSRSDVPFRGREVVAYDDIL
SwissProt top hitse value%identityAlignment
P0CJ66 Uncharacterized protein At1g270501.7e-4951.71Show/hide
Query:  MGRKRDKPYPSSHLPTSAAKRRRP--PPSTVDDD-LEKPVSKPAPPLALVVVDLPSQCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTA
        M RKRDKPY + H P   +KRRRP  P S+  D+ ++KP++KP PP ALVV+ LP+ CSVL+LKSRFEIYGSISRIRI +D +G ++YRT +SA+AA+  
Subjt:  MGRKRDKPYPSSHLPTSAAKRRRP--PPSTVDDD-LEKPVSKPAPPLALVVVDLPSQCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTA

Query:  ALDPSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNK--ELSSKLLRAEVPLSRHGRSNKLASTIVNPRRSN----------SSSRSDVPFRGREVVA
        + +PSF  +IDSKK++V+WA DP V+W++G+  G  K +    SSKLLR  +PL +HGRS++LAS IVNPR  N          SS  +    + R +V 
Subjt:  ALDPSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNK--ELSSKLLRAEVPLSRHGRSNKLASTIVNPRRSN----------SSSRSDVPFRGREVVA

Query:  YDDIL
        YDDI+
Subjt:  YDDIL
Arabidopsis top hitse value%identityAlignment
AT1G27050.1 homeobox protein 541.2e-5051.71Show/hide
Query:  MGRKRDKPYPSSHLPTSAAKRRRP--PPSTVDDD-LEKPVSKPAPPLALVVVDLPSQCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTA
        M RKRDKPY + H P   +KRRRP  P S+  D+ ++KP++KP PP ALVV+ LP+ CSVL+LKSRFEIYGSISRIRI +D +G ++YRT +SA+AA+  
Subjt:  MGRKRDKPYPSSHLPTSAAKRRRP--PPSTVDDD-LEKPVSKPAPPLALVVVDLPSQCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTA

Query:  ALDPSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNK--ELSSKLLRAEVPLSRHGRSNKLASTIVNPRRSN----------SSSRSDVPFRGREVVA
        + +PSF  +IDSKK++V+WA DP V+W++G+  G  K +    SSKLLR  +PL +HGRS++LAS IVNPR  N          SS  +    + R +V 
Subjt:  ALDPSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNK--ELSSKLLRAEVPLSRHGRSNKLASTIVNPRRSN----------SSSRSDVPFRGREVVA

Query:  YDDIL
        YDDI+
Subjt:  YDDIL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTCGGAAGAGAGATAAACCCTACCCTTCCTCCCACCTTCCTACCTCTGCCGCTAAGAGGCGACGCCCTCCGCCGTCTACGGTGGACGATGATTTGGAAAAGCCCGT
GTCTAAACCTGCGCCACCGCTTGCCCTAGTCGTCGTTGACCTTCCTTCACAATGTTCGGTCCTTGACTTGAAGTCCCGGTTTGAGATCTACGGATCCATTTCCCGCATCC
GAATCGACCGTGATTGTGTTGGCTACATCACTTATCGCACTAAAGACTCCGCCGATGCTGCCATGACCGCTGCCCTTGATCCCTCCTTCGCCTTCACTATTGATTCCAAA
AAGGTTCAGGTACTATGGGCGAATGATCCTCAAGTCCAATGGCGACAAGGGATTAACGTTGGTGTTAACAAGAATAAGGAATTATCTTCAAAGCTCTTGCGGGCAGAGGT
GCCACTAAGCAGACATGGAAGAAGCAATAAGCTTGCTTCAACCATTGTCAACCCCAGAAGAAGCAACAGCTCTTCAAGGTCAGATGTGCCTTTCAGGGGCAGAGAAGTTG
TTGCTTATGATGATATTCTCTAA
mRNA sequenceShow/hide mRNA sequence
CAACAACCAAAAAAAAAAAAAAATCTAAAAGTATATAATTTTGAAGAAAAGGAAGAAGAAATGTCTGAGGAAGTGGTGTACTAAAAAAGTGTTCAAAATGCATCAAATAT
TTTCAAAATTAAAACTGTCAAAGTTTCCTTTTTTCTTTTGCTTTCTTGATGTTGTGAAAATTTTCTATACATTATCTTTTTAGCGCCACCCATTCTCAGCCGCCGCTCAA
CCGACGAGCCATGGGTCGGAAGAGAGATAAACCCTACCCTTCCTCCCACCTTCCTACCTCTGCCGCTAAGAGGCGACGCCCTCCGCCGTCTACGGTGGACGATGATTTGG
AAAAGCCCGTGTCTAAACCTGCGCCACCGCTTGCCCTAGTCGTCGTTGACCTTCCTTCACAATGTTCGGTCCTTGACTTGAAGTCCCGGTTTGAGATCTACGGATCCATT
TCCCGCATCCGAATCGACCGTGATTGTGTTGGCTACATCACTTATCGCACTAAAGACTCCGCCGATGCTGCCATGACCGCTGCCCTTGATCCCTCCTTCGCCTTCACTAT
TGATTCCAAAAAGGTTCAGGTACTATGGGCGAATGATCCTCAAGTCCAATGGCGACAAGGGATTAACGTTGGTGTTAACAAGAATAAGGAATTATCTTCAAAGCTCTTGC
GGGCAGAGGTGCCACTAAGCAGACATGGAAGAAGCAATAAGCTTGCTTCAACCATTGTCAACCCCAGAAGAAGCAACAGCTCTTCAAGGTCAGATGTGCCTTTCAGGGGC
AGAGAAGTTGTTGCTTATGATGATATTCTCTAAGTTCACAGATTGCGTCATTTGTTTTCTCCTTTTCATTTAGTGTGGTGGTATAGTGTAGTATAGATCGAGTTCTTAAG
TGTACAATTAATTTATGTCAGTTGTCTCATATTCCCTCATTAATTCTTCTTGATTCAAACTTCTTTATGATCCTAAATCCAAGTTTGTATTAATCTGAAACTCAAGCTTT
TCATCAAGGCTTAGTTGCTTACTTAATTACTATGTTCTTTTAGTCTTGCTTTGATCTTTGCCCCTTGCTATATGAGCTTCTTCTAGAGTATAGAGCTTCCTCTAACGGGA
CTATGTCTATGATCGGATCCCTTGAAGTTGTAGGTACGAGAACTTGACTAACATTATGTAAGAACTTCAATGGAGTGCTAGAGTGTACGATTTTCATATACACTGTATAG
TTTTTCTTTTATTGAATTATGTTCTTGAACTTCCTTGGG
Protein sequenceShow/hide protein sequence
MGRKRDKPYPSSHLPTSAAKRRRPPPSTVDDDLEKPVSKPAPPLALVVVDLPSQCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTAALDPSFAFTIDSK
KVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIVNPRRSNSSSRSDVPFRGREVVAYDDIL