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IVF0015541 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0015541
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionThiamine-phosphate pyrophosphorylase
Genome locationchr10:15532049..15534812
RNA-Seq ExpressionIVF0015541
SyntenyIVF0015541
Gene Ontology termsGO:0009228 - thiamine biosynthetic process (biological process)
GO:0009229 - thiamine diphosphate biosynthetic process (biological process)
GO:0016310 - phosphorylation (biological process)
GO:0003677 - DNA binding (molecular function)
GO:0004789 - thiamine-phosphate diphosphorylase activity (molecular function)
GO:0008972 - phosphomethylpyrimidine kinase activity (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR004399 - Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase domain
IPR013749 - Pyridoxamine kinase/Phosphomethylpyrimidine kinase
IPR029056 - Ribokinase-like
IPR045029 - Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035954.1 thiamine biosynthetic bifunctional enzyme TH1 [Cucumis melo var. makuwa]3.41e-97100Show/hide
Query:  MVPLPLISQIPKFNQVSRFCMAMKKQEEMVVASSDRYETRIPHVLSVAGSDSGAGAGIQADLKTCAARGVYCSTVITAITAQNTVGVQDVNIVPEGFVSK
        MVPLPLISQIPKFNQVSRFCMAMKKQEEMVVASSDRYETRIPHVLSVAGSDSGAGAGIQADLKTCAARGVYCSTVITAITAQNTVGVQDVNIVPEGFVSK
Subjt:  MVPLPLISQIPKFNQVSRFCMAMKKQEEMVVASSDRYETRIPHVLSVAGSDSGAGAGIQADLKTCAARGVYCSTVITAITAQNTVGVQDVNIVPEGFVSK

Query:  QLKSVLSDMQVDVVKTGMLPSTGIVQVLHQCLKEFPVRALVVDPVMVSTSGDVLAGPTIISVLQ
        QLKSVLSDMQVDVVKTGMLPSTGIVQVLHQCLKEFPVRALVVDPVMVSTSGDVLAGPTIISVLQ
Subjt:  QLKSVLSDMQVDVVKTGMLPSTGIVQVLHQCLKEFPVRALVVDPVMVSTSGDVLAGPTIISVLQ

TYK30446.1 thiamine biosynthetic bifunctional enzyme TH1 [Cucumis melo var. makuwa]4.83e-97100Show/hide
Query:  MVPLPLISQIPKFNQVSRFCMAMKKQEEMVVASSDRYETRIPHVLSVAGSDSGAGAGIQADLKTCAARGVYCSTVITAITAQNTVGVQDVNIVPEGFVSK
        MVPLPLISQIPKFNQVSRFCMAMKKQEEMVVASSDRYETRIPHVLSVAGSDSGAGAGIQADLKTCAARGVYCSTVITAITAQNTVGVQDVNIVPEGFVSK
Subjt:  MVPLPLISQIPKFNQVSRFCMAMKKQEEMVVASSDRYETRIPHVLSVAGSDSGAGAGIQADLKTCAARGVYCSTVITAITAQNTVGVQDVNIVPEGFVSK

Query:  QLKSVLSDMQVDVVKTGMLPSTGIVQVLHQCLKEFPVRALVVDPVMVSTSGDVLAGPTIISVLQ
        QLKSVLSDMQVDVVKTGMLPSTGIVQVLHQCLKEFPVRALVVDPVMVSTSGDVLAGPTIISVLQ
Subjt:  QLKSVLSDMQVDVVKTGMLPSTGIVQVLHQCLKEFPVRALVVDPVMVSTSGDVLAGPTIISVLQ

XP_004140412.1 thiamine biosynthetic bifunctional enzyme TH1, chloroplastic isoform X1 [Cucumis sativus]2.53e-9696.34Show/hide
Query:  MVPLPLISQIPKFNQVSRFCMAMKKQEEMVVASSDRYETRIPHVLSVAGSDSGAGAGIQADLKTCAARGVYCSTVITAITAQNTVGVQDVNIVPEGFVSK
        MVPLPLISQIPKFNQVSRFCMAMKKQ+EMVVASS+R ET IPHVLSVAGSDSGAGAGIQADLKTCAARGVYCSTVITAITAQNTVGVQDVN+VPEGFVSK
Subjt:  MVPLPLISQIPKFNQVSRFCMAMKKQEEMVVASSDRYETRIPHVLSVAGSDSGAGAGIQADLKTCAARGVYCSTVITAITAQNTVGVQDVNIVPEGFVSK

Query:  QLKSVLSDMQVDVVKTGMLPSTGIVQVLHQCLKEFPVRALVVDPVMVSTSGDVLAGPTIISVLQ
        QLKSVLSDMQVDVVKTGMLPSTGIVQVLHQCLKEFPVRALVVDPVMVSTSGDVLAGP IISVLQ
Subjt:  QLKSVLSDMQVDVVKTGMLPSTGIVQVLHQCLKEFPVRALVVDPVMVSTSGDVLAGPTIISVLQ

XP_008460243.1 PREDICTED: thiamine biosynthetic bifunctional enzyme TH1, chloroplastic isoform X2 [Cucumis melo]5.93e-101100Show/hide
Query:  MVPLPLISQIPKFNQVSRFCMAMKKQEEMVVASSDRYETRIPHVLSVAGSDSGAGAGIQADLKTCAARGVYCSTVITAITAQNTVGVQDVNIVPEGFVSK
        MVPLPLISQIPKFNQVSRFCMAMKKQEEMVVASSDRYETRIPHVLSVAGSDSGAGAGIQADLKTCAARGVYCSTVITAITAQNTVGVQDVNIVPEGFVSK
Subjt:  MVPLPLISQIPKFNQVSRFCMAMKKQEEMVVASSDRYETRIPHVLSVAGSDSGAGAGIQADLKTCAARGVYCSTVITAITAQNTVGVQDVNIVPEGFVSK

Query:  QLKSVLSDMQVDVVKTGMLPSTGIVQVLHQCLKEFPVRALVVDPVMVSTSGDVLAGPTIISVLQ
        QLKSVLSDMQVDVVKTGMLPSTGIVQVLHQCLKEFPVRALVVDPVMVSTSGDVLAGPTIISVLQ
Subjt:  QLKSVLSDMQVDVVKTGMLPSTGIVQVLHQCLKEFPVRALVVDPVMVSTSGDVLAGPTIISVLQ

XP_038876926.1 thiamine biosynthetic bifunctional enzyme TH1, chloroplastic [Benincasa hispida]5.48e-9695.73Show/hide
Query:  MVPLPLISQIPKFNQVSRFCMAMKKQEEMVVASSDRYETRIPHVLSVAGSDSGAGAGIQADLKTCAARGVYCSTVITAITAQNTVGVQDVNIVPEGFVSK
        MVPLPLISQIPKFNQVSRFC+AMKK EE VVASSDRYE RIPHVLSVAGSDSGAGAGIQADLKTCAARGVYCSTVITAITAQNTVGVQDVNIVPEGFVS+
Subjt:  MVPLPLISQIPKFNQVSRFCMAMKKQEEMVVASSDRYETRIPHVLSVAGSDSGAGAGIQADLKTCAARGVYCSTVITAITAQNTVGVQDVNIVPEGFVSK

Query:  QLKSVLSDMQVDVVKTGMLPSTGIVQVLHQCLKEFPVRALVVDPVMVSTSGDVLAGPTIISVLQ
        QLKSVLSDMQVDVVKTGMLPSTGIV+VLHQCLKEFPV+ALVVDPVMVSTSGDVLAGPTIISVLQ
Subjt:  QLKSVLSDMQVDVVKTGMLPSTGIVQVLHQCLKEFPVRALVVDPVMVSTSGDVLAGPTIISVLQ

TrEMBL top hitse value%identityAlignment
A0A1S3CCI6 Thiamine-phosphate pyrophosphorylase1.9e-81100Show/hide
Query:  MVPLPLISQIPKFNQVSRFCMAMKKQEEMVVASSDRYETRIPHVLSVAGSDSGAGAGIQADLKTCAARGVYCSTVITAITAQNTVGVQDVNIVPEGFVSK
        MVPLPLISQIPKFNQVSRFCMAMKKQEEMVVASSDRYETRIPHVLSVAGSDSGAGAGIQADLKTCAARGVYCSTVITAITAQNTVGVQDVNIVPEGFVSK
Subjt:  MVPLPLISQIPKFNQVSRFCMAMKKQEEMVVASSDRYETRIPHVLSVAGSDSGAGAGIQADLKTCAARGVYCSTVITAITAQNTVGVQDVNIVPEGFVSK

Query:  QLKSVLSDMQVDVVKTGMLPSTGIVQVLHQCLKEFPVRALVVDPVMVSTSGDVLAGPTIISVLQ
        QLKSVLSDMQVDVVKTGMLPSTGIVQVLHQCLKEFPVRALVVDPVMVSTSGDVLAGPTIISVLQ
Subjt:  QLKSVLSDMQVDVVKTGMLPSTGIVQVLHQCLKEFPVRALVVDPVMVSTSGDVLAGPTIISVLQ

A0A5A7SX87 Thiamine biosynthetic bifunctional enzyme TH11.9e-81100Show/hide
Query:  MVPLPLISQIPKFNQVSRFCMAMKKQEEMVVASSDRYETRIPHVLSVAGSDSGAGAGIQADLKTCAARGVYCSTVITAITAQNTVGVQDVNIVPEGFVSK
        MVPLPLISQIPKFNQVSRFCMAMKKQEEMVVASSDRYETRIPHVLSVAGSDSGAGAGIQADLKTCAARGVYCSTVITAITAQNTVGVQDVNIVPEGFVSK
Subjt:  MVPLPLISQIPKFNQVSRFCMAMKKQEEMVVASSDRYETRIPHVLSVAGSDSGAGAGIQADLKTCAARGVYCSTVITAITAQNTVGVQDVNIVPEGFVSK

Query:  QLKSVLSDMQVDVVKTGMLPSTGIVQVLHQCLKEFPVRALVVDPVMVSTSGDVLAGPTIISVLQ
        QLKSVLSDMQVDVVKTGMLPSTGIVQVLHQCLKEFPVRALVVDPVMVSTSGDVLAGPTIISVLQ
Subjt:  QLKSVLSDMQVDVVKTGMLPSTGIVQVLHQCLKEFPVRALVVDPVMVSTSGDVLAGPTIISVLQ

A0A5D3E3I3 Thiamine biosynthetic bifunctional enzyme TH11.9e-81100Show/hide
Query:  MVPLPLISQIPKFNQVSRFCMAMKKQEEMVVASSDRYETRIPHVLSVAGSDSGAGAGIQADLKTCAARGVYCSTVITAITAQNTVGVQDVNIVPEGFVSK
        MVPLPLISQIPKFNQVSRFCMAMKKQEEMVVASSDRYETRIPHVLSVAGSDSGAGAGIQADLKTCAARGVYCSTVITAITAQNTVGVQDVNIVPEGFVSK
Subjt:  MVPLPLISQIPKFNQVSRFCMAMKKQEEMVVASSDRYETRIPHVLSVAGSDSGAGAGIQADLKTCAARGVYCSTVITAITAQNTVGVQDVNIVPEGFVSK

Query:  QLKSVLSDMQVDVVKTGMLPSTGIVQVLHQCLKEFPVRALVVDPVMVSTSGDVLAGPTIISVLQ
        QLKSVLSDMQVDVVKTGMLPSTGIVQVLHQCLKEFPVRALVVDPVMVSTSGDVLAGPTIISVLQ
Subjt:  QLKSVLSDMQVDVVKTGMLPSTGIVQVLHQCLKEFPVRALVVDPVMVSTSGDVLAGPTIISVLQ

A0A6J1GYV1 Thiamine-phosphate pyrophosphorylase2.1e-7290.85Show/hide
Query:  MVPLPLISQIPKFNQVSRFCMAMKKQEEMVVASSDRYETRIPHVLSVAGSDSGAGAGIQADLKTCAARGVYCSTVITAITAQNTVGVQDVNIVPEGFVSK
        MV LPL  QIPKFNQVSRFCMAMKK EE VVASSDR+E RIPHVLSVAGSDSGAGAGIQADLKTCAARGVYCSTVITA+TAQNTVGVQDVNI+PEGFVS+
Subjt:  MVPLPLISQIPKFNQVSRFCMAMKKQEEMVVASSDRYETRIPHVLSVAGSDSGAGAGIQADLKTCAARGVYCSTVITAITAQNTVGVQDVNIVPEGFVSK

Query:  QLKSVLSDMQVDVVKTGMLPSTGIVQVLHQCLKEFPVRALVVDPVMVSTSGDVLAGPTIISVLQ
        QLKSVLSDMQVDVVKTGMLPSTGI+QV+HQ LKEFPV+ALVVDPVMVSTSGDVLA PTIISVLQ
Subjt:  QLKSVLSDMQVDVVKTGMLPSTGIVQVLHQCLKEFPVRALVVDPVMVSTSGDVLAGPTIISVLQ

A0A6J1KCE1 Thiamine-phosphate pyrophosphorylase1.8e-7190.85Show/hide
Query:  MVPLPLISQIPKFNQVSRFCMAMKKQEEMVVASSDRYETRIPHVLSVAGSDSGAGAGIQADLKTCAARGVYCSTVITAITAQNTVGVQDVNIVPEGFVSK
        MV LPL  QIPKFNQVSRFCMAMKK EE VVASSDRYE RIPHVLSVAGSDSGAGAGIQADLKTCAARGVYCSTVITA+TAQNTVGVQDVNI+PEGFVS+
Subjt:  MVPLPLISQIPKFNQVSRFCMAMKKQEEMVVASSDRYETRIPHVLSVAGSDSGAGAGIQADLKTCAARGVYCSTVITAITAQNTVGVQDVNIVPEGFVSK

Query:  QLKSVLSDMQVDVVKTGMLPSTGIVQVLHQCLKEFPVRALVVDPVMVSTSGDVLAGPTIISVLQ
        QLKSVLSDMQVDVVKTGMLPSTGI+QV+ Q LKEFPV+ALVVDPVMVSTSGDVLA PTIISVLQ
Subjt:  QLKSVLSDMQVDVVKTGMLPSTGIVQVLHQCLKEFPVRALVVDPVMVSTSGDVLAGPTIISVLQ

SwissProt top hitse value%identityAlignment
O48881 Thiamine biosynthetic bifunctional enzyme BTH1, chloroplastic6.7e-3968.8Show/hide
Query:  RIPHVLSVAGSDSGAGAGIQADLKTCAARGVYCSTVITAITAQNTVGVQDVNIVPEGFVSKQLKSVLSDMQVDVVKTGMLPSTGIVQVLHQCLKEFPVRA
        ++  VL+VAGSDSGAGAGIQAD+K CAARGVYC++V TA+ A+NT  VQ V+++P   VS+QLKSVLSD +VDVVKTGMLPS  IV+VL Q L E+PVRA
Subjt:  RIPHVLSVAGSDSGAGAGIQADLKTCAARGVYCSTVITAITAQNTVGVQDVNIVPEGFVSKQLKSVLSDMQVDVVKTGMLPSTGIVQVLHQCLKEFPVRA

Query:  LVVDPVMVSTSGDVLAGPTIISVLQ
        LVVDPVMVSTSG VLAG +I+S+ +
Subjt:  LVVDPVMVSTSGDVLAGPTIISVLQ

P56904 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase4.4e-2254.62Show/hide
Query:  LSVAGSDSGAGAGIQADLKTCAARGVYCSTVITAITAQNTVGVQDVNIVPEGFVSKQLKSVLSDMQVDVVKTGMLPSTGIVQVLHQCLKEFPVRALVVDP
        LS+AGSDSG GAGIQADLKT +A GVY ++VITAITAQNT GV  V  V    VS Q+ +V SD+ V  VK GM+     +  +   L+ F  RA VVDP
Subjt:  LSVAGSDSGAGAGIQADLKTCAARGVYCSTVITAITAQNTVGVQDVNIVPEGFVSKQLKSVLSDMQVDVVKTGMLPSTGIVQVLHQCLKEFPVRALVVDP

Query:  VMVSTSGDVLAGPTIISVL
        VMV+TSGD L  P  ++ L
Subjt:  VMVSTSGDVLAGPTIISVL

P61422 Thiamine biosynthesis bifunctional protein ThiED3.0e-2354.55Show/hide
Query:  VLSVAGSDSGAGAGIQADLKTCAARGVYCSTVITAITAQNTVGVQDVNIVPEGFVSKQLKSVLSDMQVDVVKTGMLPSTGIVQVLHQCLKEFPVRALVVD
        VL+VAGSDSG GAGIQADLKT    G Y S+V+TA+TAQNT GV  ++ VP  FV+ QL +V SD+ VDVVKTGML S   +  +   L E+  R +VVD
Subjt:  VLSVAGSDSGAGAGIQADLKTCAARGVYCSTVITAITAQNTVGVQDVNIVPEGFVSKQLKSVLSDMQVDVVKTGMLPSTGIVQVLHQCLKEFPVRALVVD

Query:  PVMVSTSGDVLAGPTIISVLQ
        PVMV+  G  L     +SVL+
Subjt:  PVMVSTSGDVLAGPTIISVLQ

Q2QWK9 Probable thiamine biosynthetic bifunctional enzyme, chloroplastic3.8e-4263.31Show/hide
Query:  KKQEEMVVASSDRYETRIPHVLSVAGSDSGAGAGIQADLKTCAARGVYCSTVITAITAQNTVGVQDVNIVPEGFVSKQLKSVLSDMQVDVVKTGMLPSTG
        ++   +  ++S   E   PHVL+VAGSDSG GAGIQAD+K CAA G YCS+V+TA+TAQNT GVQ +++VPE F+ +QL SVLSDM VDVVKTGMLPS G
Subjt:  KKQEEMVVASSDRYETRIPHVLSVAGSDSGAGAGIQADLKTCAARGVYCSTVITAITAQNTVGVQDVNIVPEGFVSKQLKSVLSDMQVDVVKTGMLPSTG

Query:  IVQVLHQCLKEFPVRALVVDPVMVSTSGDVLAGPTIISV
        +V+VL + LK+FPV+ALVVDPVMVSTSGD L+  + +SV
Subjt:  IVQVLHQCLKEFPVRALVVDPVMVSTSGDVLAGPTIISV

Q5M731 Thiamine biosynthetic bifunctional enzyme TH1, chloroplastic1.5e-4373.6Show/hide
Query:  RIPHVLSVAGSDSGAGAGIQADLKTCAARGVYCSTVITAITAQNTVGVQDVNIVPEGFVSKQLKSVLSDMQVDVVKTGMLPSTGIVQVLHQCLKEFPVRA
        ++P VL+VAGSDSGAGAGIQADLK CAARGVYC++VITA+TAQNT GVQ V+++P  F+S+QLKSVLSD + DVVKTGMLPST IV+VL Q L +FPVRA
Subjt:  RIPHVLSVAGSDSGAGAGIQADLKTCAARGVYCSTVITAITAQNTVGVQDVNIVPEGFVSKQLKSVLSDMQVDVVKTGMLPSTGIVQVLHQCLKEFPVRA

Query:  LVVDPVMVSTSGDVLAGPTIISVLQ
        LVVDPVMVSTSG VLAG +I+S+ +
Subjt:  LVVDPVMVSTSGDVLAGPTIISVLQ

Arabidopsis top hitse value%identityAlignment
AT1G22940.1 thiamin biosynthesis protein, putative1.1e-4473.6Show/hide
Query:  RIPHVLSVAGSDSGAGAGIQADLKTCAARGVYCSTVITAITAQNTVGVQDVNIVPEGFVSKQLKSVLSDMQVDVVKTGMLPSTGIVQVLHQCLKEFPVRA
        ++P VL+VAGSDSGAGAGIQADLK CAARGVYC++VITA+TAQNT GVQ V+++P  F+S+QLKSVLSD + DVVKTGMLPST IV+VL Q L +FPVRA
Subjt:  RIPHVLSVAGSDSGAGAGIQADLKTCAARGVYCSTVITAITAQNTVGVQDVNIVPEGFVSKQLKSVLSDMQVDVVKTGMLPSTGIVQVLHQCLKEFPVRA

Query:  LVVDPVMVSTSGDVLAGPTIISVLQ
        LVVDPVMVSTSG VLAG +I+S+ +
Subjt:  LVVDPVMVSTSGDVLAGPTIISVLQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGCCGCTGCCCCTCATTTCTCAGATCCCTAAGTTCAATCAAGTTTCTAGATTTTGTATGGCCATGAAGAAGCAGGAAGAAATGGTTGTAGCTTCAAGTGATCGATA
TGAGACGCGGATTCCGCATGTGTTGAGTGTTGCTGGTTCTGATTCGGGAGCAGGGGCTGGAATCCAAGCAGATCTTAAGACATGTGCTGCTCGTGGAGTGTATTGCTCCA
CTGTGATAACTGCTATTACTGCACAGAATACTGTGGGGGTTCAGGATGTAAACATTGTTCCGGAGGGCTTTGTTTCAAAGCAGCTGAAATCTGTTCTCTCTGATATGCAA
GTGGATGTGGTGAAAACAGGAATGCTACCTTCTACTGGCATTGTTCAAGTTCTACATCAGTGCTTGAAGGAGTTTCCTGTTCGAGCTTTGGTGGTTGATCCTGTCATGGT
GTCTACTAGTGGAGATGTTCTCGCTGGTCCTACTATTATTTCAGTGTTACAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTGCCGCTGCCCCTCATTTCTCAGATCCCTAAGTTCAATCAAGTTTCTAGATTTTGTATGGCCATGAAGAAGCAGGAAGAAATGGTTGTAGCTTCAAGTGATCGATA
TGAGACGCGGATTCCGCATGTGTTGAGTGTTGCTGGTTCTGATTCGGGAGCAGGGGCTGGAATCCAAGCAGATCTTAAGACATGTGCTGCTCGTGGAGTGTATTGCTCCA
CTGTGATAACTGCTATTACTGCACAGAATACTGTGGGGGTTCAGGATGTAAACATTGTTCCGGAGGGCTTTGTTTCAAAGCAGCTGAAATCTGTTCTCTCTGATATGCAA
GTGGATGTGGTGAAAACAGGAATGCTACCTTCTACTGGCATTGTTCAAGTTCTACATCAGTGCTTGAAGGAGTTTCCTGTTCGAGCTTTGGTGGTTGATCCTGTCATGGT
GTCTACTAGTGGAGATGTTCTCGCTGGTCCTACTATTATTTCAGTGTTACAGTAA
Protein sequenceShow/hide protein sequence
MVPLPLISQIPKFNQVSRFCMAMKKQEEMVVASSDRYETRIPHVLSVAGSDSGAGAGIQADLKTCAARGVYCSTVITAITAQNTVGVQDVNIVPEGFVSKQLKSVLSDMQ
VDVVKTGMLPSTGIVQVLHQCLKEFPVRALVVDPVMVSTSGDVLAGPTIISVLQ