; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0015564 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0015564
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Descriptionprotein TIC 40, chloroplastic-like isoform X2
Genome locationchr11:13197864..13203160
RNA-Seq ExpressionIVF0015564
SyntenyIVF0015564
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0066218.1 protein TIC 40 [Cucumis melo var. makuwa]2.12e-3193.75Show/hide
Query:  MSGSPQWNGHLKNSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQAAIMD
        MSGSPQW+G L +SLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQAAIMD
Subjt:  MSGSPQWNGHLKNSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQAAIMD
TYK08643.1 protein TIC 40 [Cucumis melo var. makuwa]2.12e-3193.75Show/hide
Query:  MSGSPQWNGHLKNSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQAAIMD
        MSGSPQW+G L +SLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQAAIMD
Subjt:  MSGSPQWNGHLKNSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQAAIMD
XP_008464160.1 PREDICTED: uncharacterized protein LOC103502106 isoform X1 [Cucumis melo]6.24e-64100Show/hide
Query:  MSGSPQWNGHLKNSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQAAIMDIFADGRLAFNGLSKTVKKVGRSSKESLVLEPLCDEV
        MSGSPQWNGHLKNSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQAAIMDIFADGRLAFNGLSKTVKKVGRSSKESLVLEPLCDEV
Subjt:  MSGSPQWNGHLKNSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQAAIMDIFADGRLAFNGLSKTVKKVGRSSKESLVLEPLCDEV
XP_008464161.1 PREDICTED: protein TIC 40, chloroplastic-like isoform X2 [Cucumis melo]1.25e-63100Show/hide
Query:  MSGSPQWNGHLKNSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQAAIMDIFADGRLAFNGLSKTVKKVGRSSKESLVLEPLCDE
        MSGSPQWNGHLKNSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQAAIMDIFADGRLAFNGLSKTVKKVGRSSKESLVLEPLCDE
Subjt:  MSGSPQWNGHLKNSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQAAIMDIFADGRLAFNGLSKTVKKVGRSSKESLVLEPLCDE
XP_008464162.1 PREDICTED: protein TIC 40, chloroplastic-like isoform X3 [Cucumis melo]1.07e-63100Show/hide
Query:  MSGSPQWNGHLKNSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQAAIMDIFADGRLAFNGLSKTVKKVGRSSKESLVLEPLCDE
        MSGSPQWNGHLKNSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQAAIMDIFADGRLAFNGLSKTVKKVGRSSKESLVLEPLCDE
Subjt:  MSGSPQWNGHLKNSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQAAIMDIFADGRLAFNGLSKTVKKVGRSSKESLVLEPLCDE
TrEMBL top hitse value%identityAlignment
A0A1S3CKU8 uncharacterized protein LOC103502106 isoform X15.7e-48100Show/hide
Query:  MSGSPQWNGHLKNSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQAAIMDIFADGRLAFNGLSKTVKKVGRSSKESLVLEPLCDEV
        MSGSPQWNGHLKNSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQAAIMDIFADGRLAFNGLSKTVKKVGRSSKESLVLEPLCDEV
Subjt:  MSGSPQWNGHLKNSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQAAIMDIFADGRLAFNGLSKTVKKVGRSSKESLVLEPLCDEV
A0A1S3CKV0 protein TIC 40, chloroplastic-like isoform X21.6e-47100Show/hide
Query:  MSGSPQWNGHLKNSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQAAIMDIFADGRLAFNGLSKTVKKVGRSSKESLVLEPLCDE
        MSGSPQWNGHLKNSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQAAIMDIFADGRLAFNGLSKTVKKVGRSSKESLVLEPLCDE
Subjt:  MSGSPQWNGHLKNSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQAAIMDIFADGRLAFNGLSKTVKKVGRSSKESLVLEPLCDE
A0A1S3CLB3 protein TIC 40, chloroplastic-like isoform X31.6e-47100Show/hide
Query:  MSGSPQWNGHLKNSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQAAIMDIFADGRLAFNGLSKTVKKVGRSSKESLVLEPLCDE
        MSGSPQWNGHLKNSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQAAIMDIFADGRLAFNGLSKTVKKVGRSSKESLVLEPLCDE
Subjt:  MSGSPQWNGHLKNSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQAAIMDIFADGRLAFNGLSKTVKKVGRSSKESLVLEPLCDE
A0A5A7VET2 Protein TIC 402.0e-2493.75Show/hide
Query:  MSGSPQWNGHLKNSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQAAIMD
        MSGSPQW+G L +SLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQAAIMD
Subjt:  MSGSPQWNGHLKNSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQAAIMD
A0A5D3C9U5 Protein TIC 402.0e-2493.75Show/hide
Query:  MSGSPQWNGHLKNSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQAAIMD
        MSGSPQW+G L +SLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQAAIMD
Subjt:  MSGSPQWNGHLKNSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQAAIMD
SwissProt top hitse value%identityAlignment
Q8GT66 Protein TIC 40, chloroplastic1.5e-2173.44Show/hide
Query:  MSGSPQWNGHLKNSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQAAIMD
        M G  +W+  + ++LKNFDL+SP+VKQQFDQIGL+P+EVISKIMANP++AMAFQNPRVQAAIMD
Subjt:  MSGSPQWNGHLKNSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQAAIMD
Q9FMD5 Protein TIC 40, chloroplastic2.0e-2175Show/hide
Query:  MSGSPQWNGHLKNSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQAAIMD
        MSGS +W+  + ++LKNFDL+SPEVKQQF+QIGLTPEEVISKIM NP++AMAFQNPRVQAA+M+
Subjt:  MSGSPQWNGHLKNSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQAAIMD
Arabidopsis top hitse value%identityAlignment
AT5G16620.1 hydroxyproline-rich glycoprotein family protein1.4e-2275Show/hide
Query:  MSGSPQWNGHLKNSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQAAIMD
        MSGS +W+  + ++LKNFDL+SPEVKQQF+QIGLTPEEVISKIM NP++AMAFQNPRVQAA+M+
Subjt:  MSGSPQWNGHLKNSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQAAIMD

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTGGAAGCCCACAATGGAACGGTCACCTCAAGAATTCTTTGAAGAACTTTGATCTTAGTAGCCCTGAAGTTAAGCAGCAATTTGATCAAATTGGGCTTACACCTGA
AGAAGTTATTTCCAAAATTATGGCCAATCCCGAAATTGCAATGGCATTTCAAAATCCAAGAGTTCAAGCAGCCATCATGGATATATTTGCAGATGGCAGATTGGCATTTA
ATGGATTAAGCAAAACTGTAAAAAAGGTTGGACGGAGTTCAAAGGAAAGTTTGGTTTTGGAGCCTCTTTGTGATGAGGTACTTATAATTTCTTTCCATTTCGATGACTCA
TCAATCAAATGA
mRNA sequenceShow/hide mRNA sequence
CTCACGCCCTAATTTCTAAATCTCATGCCTAATTTCACAAAGTCTTCCACGCCTCTCCAAATTTGCTGAGTCTTCCAGCGCCATTCGAAAACCTGCTGTCGTCGTCTTCT
ACATCCGTCGAAGCTTCGACGTCCGACTGAGTCTTCTGACCGAGTCATCAGCGTCACAGTTCACCCACTCTTCGACGGACACAGTCCCACCATCCCCAACAGTCCCTTCG
ACGACGCCGTAACAATATGAGTGGAAGCCCACAATGGAACGGTCACCTCAAGAATTCTTTGAAGAACTTTGATCTTAGTAGCCCTGAAGTTAAGCAGCAATTTGATCAAA
TTGGGCTTACACCTGAAGAAGTTATTTCCAAAATTATGGCCAATCCCGAAATTGCAATGGCATTTCAAAATCCAAGAGTTCAAGCAGCCATCATGGATATATTTGCAGAT
GGCAGATTGGCATTTAATGGATTAAGCAAAACTGTAAAAAAGGTTGGACGGAGTTCAAAGGAAAGTTTGGTTTTGGAGCCTCTTTGTGATGAGGTACTTATAATTTCTTT
CCATTTCGATGACTCATCAATCAAATGAATGAGTATCAGAGAATTATTATTCTATTAATACTTTAAAAAATACTATTCGTTTATAGGAGAGTGCAAAAAGGAAGAGGAGC
TAAAGAACGCACTAGAGATACAAAGATATTTGAGAAGTTGACATAGTCGAAACAATTTGGCAACAGTAGACAATGACTCTTACTTGGCTCTTACTTTCAATCTTGACCTT
TTTCTATGTCAGGTTCATCATCTACCAATAGATAATAAGATAGGATACAAGGACTTACCCAGTGGGTTGAATGGGTTTTCTATATTTGGGGAGGTCAAAAGGTGATTGTT
GATGTTGATTCCAAAAGGTGATTGTTGCAACCCTCATCTTTAAGGCACAAAGGGCATATCGATGGAAACATACGACTCCTAAACTTCTTTTACATTTTTTCATGAGTATT
TAGGCTATTCTGGTCAAGACTTCCACGATTTTAATTGGATACTAAACTTCTGCTTCCTTTTAATAGAAAAATTGATAGGATAATACCAAGGATTTTATCACCGTTAATAA
AAGTTCTCCCAATTATTTGCCCTTGTTTCTCTTTACTATTTGAGTCTGCTTCTTACTTAAAATCCTGAAATTTTCTGTTTAATTTCATTACTATATTTTGATAATTTCGT
TTCATCTTTGTTGGTCCCTAACCACCACCCTATTGTCATCATTATCATCACCTTTTTTTTCTTTGCAGCAAGGAATATGAAGCTTCCAATAAATGCCAAGTTAAAATTTA
GCATATCCTTGCAAAACCTTTCACAACCAATGTCGCTGGCAGTAATGTATTTTGTATTGTAAACAATTTGGACTTTGTATATGTATTTAGCATTGTAAAAATTTGATGAT
AGATAAAACACTCATTTTTGCGTTTTATCTTGTTTCTTTTTACTTCTTTGATCAAATGTAGGTTAGTACCTCCAAGCTAATCTTGTCTTTATGAATTTTCTTAAACTCTA
TAACCTACGTTAACTCCTTTTTCTTTGGTTTGATTTTTCTTTGATAGGCTGGTTCTCACTATCCATTTTACAAAATGGTTTCATCAAAATTTTGGTGAAGGTTTGGGAGT
GGAAAACCAAGTATGGTGGTACAATTTTAAAGCAACTGTGTTGTTTTGGTGCCTCTTTTGGTTGTACCTTTTTTTATTGGACTTGTGAGGAAAACACTTAATATTTTCTG
CTATAATTGGAGTTGATATTACATTATAGGCAGTACTAGTGCCATGATCAACCTCAATGTTTTGTTTTAGATTTTAATTTCTTGTGATATTTTGTCTATTAACTTATGTT
TTACAAATGTTGCTATTTTCTTGTCCTTACTGCTTCATAATGGATGAGAAGAGATCGAGGGCTGTCATAGAGGCTTTTATAGGCGCTAAAAGTTGTTCTCAGCCTTCTAT
TTTAAATCCCAGCACTTCATAATTCATTTTCATTCAAAAGGTTTTGTCACAATCCATTGGAGCAATGAAACGACATTTACGCCAATTTATTGATGTATAGGCTTTTTTGT
AGGTTTGGTAGGAAATTTTTTTGTTTAAATGTAGTTATTTAAATAGTTTGTTCATACCAAACACATTTGTACCAACAATTAAAGCAATATTACAAAGTGTGTTTCTTTCT
ATTAAAGCGTTCACCCTTTTTCCATA
Protein sequenceShow/hide protein sequence
MSGSPQWNGHLKNSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQAAIMDIFADGRLAFNGLSKTVKKVGRSSKESLVLEPLCDEVLIISFHFDDS
SIK