CuGenDBv2

Gene ID	IVF0015582
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	succinate dehydrogenase subunit 6, mitochondrial
Genome location	chr02:7377463..7386545
RNA-Seq Expression	IVF0015582
Synteny	IVF0015582
Gene Ontology terms	GO:0005749 - mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone) (cellular component) GO:0043495 - protein membrane anchor (molecular function)
InterPro domains	IPR034574 - Succinate dehydrogenase subunit 6, mitochondrial

Homology

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GenBank top hits

e value

%identity

Alignment

XP_008450314.1 PREDICTED: succinate dehydrogenase subunit 6, mitochondrial [Cucumis melo]

9.15e-106

100

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Query:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPYVQRPTPLPSWSSSDVEEFIASDPVHGPVLKTAREAVNFGLTGSVIGAVSTAGVAWKYSKSLHGAGL
        MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPYVQRPTPLPSWSSSDVEEFIASDPVHGPVLKTAREAVNFGLTGSVIGAVSTAGVAWKYSKSLHGAGL
Subjt:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPYVQRPTPLPSWSSSDVEEFIASDPVHGPVLKTAREAVNFGLTGSVIGAVSTAGVAWKYSKSLHGAGL

Query:  SFLAGGAFGWTFGQEIANHWYQLYRLDTMAAQVKFMEWWRNKSEGSS
        SFLAGGAFGWTFGQEIANHWYQLYRLDTMAAQVKFMEWWRNKSEGSS
Subjt:  SFLAGGAFGWTFGQEIANHWYQLYRLDTMAAQVKFMEWWRNKSEGSS

XP_011660175.1 succinate dehydrogenase subunit 6, mitochondrial [Cucumis sativus]

1.46e-102

96.6

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Query:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPYVQRPTPLPSWSSSDVEEFIASDPVHGPVLKTAREAVNFGLTGSVIGAVSTAGVAWKYSKSLHGAGL
        MEDSSSQSFFRKHWEGYKEFWS+RFSILDNYSPYVQR TPLPSWSSSDVEEFIASDPVHGPVLKTAREAVNFGLTGSVIGAVSTAGVAWKYS+SLHGAGL
Subjt:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPYVQRPTPLPSWSSSDVEEFIASDPVHGPVLKTAREAVNFGLTGSVIGAVSTAGVAWKYSKSLHGAGL

Query:  SFLAGGAFGWTFGQEIANHWYQLYRLDTMAAQVKFMEWWRNKSEGSS
        SFLAGG FGWTFGQEIANHWYQLYR+DTMAAQVKFMEWWRNKSEGSS
Subjt:  SFLAGGAFGWTFGQEIANHWYQLYRLDTMAAQVKFMEWWRNKSEGSS

XP_022153276.1 succinate dehydrogenase subunit 6, mitochondrial [Momordica charantia]

5.51e-98

93.1

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Query:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPYVQRPTPLPSWSSSDVEEFIASDPVHGPVLKTAREAVNFGLTGSVIGAVSTAGVAWKYSKSLHGAGL
        MEDSSSQSFFRKHWEGYKEFWSERFSILDNY+PYVQR  PLPSWSSSDVE FIASDPVHGP LKTAREAVNFGLTGSVIGAVSTAGVAWKYS+SLHGAGL
Subjt:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPYVQRPTPLPSWSSSDVEEFIASDPVHGPVLKTAREAVNFGLTGSVIGAVSTAGVAWKYSKSLHGAGL

Query:  SFLAGGAFGWTFGQEIANHWYQLYRLDTMAAQVKFMEWWRNKSEG
        SFLAGG FGWTFG E+ANHWYQLYRLDTMAAQVKFMEWWRNK+EG
Subjt:  SFLAGGAFGWTFGQEIANHWYQLYRLDTMAAQVKFMEWWRNKSEG

XP_022927277.1 succinate dehydrogenase subunit 6, mitochondrial-like [Cucurbita moschata]

1.92e-98

93.79

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Query:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPYVQRPTPLPSWSSSDVEEFIASDPVHGPVLKTAREAVNFGLTGSVIGAVSTAGVAWKYSKSLHGAGL
        MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSP+VQR  PLPSWS SDVEEFIASDPVHGPVLKTAREAVNFGLTGS+IGAVSTAGVAWKYS+SLHGAGL
Subjt:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPYVQRPTPLPSWSSSDVEEFIASDPVHGPVLKTAREAVNFGLTGSVIGAVSTAGVAWKYSKSLHGAGL

Query:  SFLAGGAFGWTFGQEIANHWYQLYRLDTMAAQVKFMEWWRNKSEG
        SFLAGGAFGWTFG EIANHWYQLYR+DTM AQVKFMEWWRNKSEG
Subjt:  SFLAGGAFGWTFGQEIANHWYQLYRLDTMAAQVKFMEWWRNKSEG

XP_022965868.1 succinate dehydrogenase subunit 6, mitochondrial-like [Cucurbita maxima]

1.43e-97

93.75

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Query:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPYVQRPTPLPSWSSSDVEEFIASDPVHGPVLKTAREAVNFGLTGSVIGAVSTAGVAWKYSKSLHGAGL
        MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSP+VQR  PLPSWS SDVEEFIASDPVHGPVLKTAREAVNFGLTGS+IGAVSTAGVAWKYS+SLHGAGL
Subjt:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPYVQRPTPLPSWSSSDVEEFIASDPVHGPVLKTAREAVNFGLTGSVIGAVSTAGVAWKYSKSLHGAGL

Query:  SFLAGGAFGWTFGQEIANHWYQLYRLDTMAAQVKFMEWWRNKSE
        SFLAGGAFGWTFG EIANHWYQLYR+DTM AQVKFMEWWRNKSE
Subjt:  SFLAGGAFGWTFGQEIANHWYQLYRLDTMAAQVKFMEWWRNKSE

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BP04 succinate dehydrogenase subunit 6, mitochondrial

3.3e-80

100

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Query:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPYVQRPTPLPSWSSSDVEEFIASDPVHGPVLKTAREAVNFGLTGSVIGAVSTAGVAWKYSKSLHGAGL
        MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPYVQRPTPLPSWSSSDVEEFIASDPVHGPVLKTAREAVNFGLTGSVIGAVSTAGVAWKYSKSLHGAGL
Subjt:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPYVQRPTPLPSWSSSDVEEFIASDPVHGPVLKTAREAVNFGLTGSVIGAVSTAGVAWKYSKSLHGAGL

Query:  SFLAGGAFGWTFGQEIANHWYQLYRLDTMAAQVKFMEWWRNKSEGSS
        SFLAGGAFGWTFGQEIANHWYQLYRLDTMAAQVKFMEWWRNKSEGSS
Subjt:  SFLAGGAFGWTFGQEIANHWYQLYRLDTMAAQVKFMEWWRNKSEGSS

A0A5D3DY28 Succinate dehydrogenase subunit 6

3.3e-80

100

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Query:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPYVQRPTPLPSWSSSDVEEFIASDPVHGPVLKTAREAVNFGLTGSVIGAVSTAGVAWKYSKSLHGAGL
        MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPYVQRPTPLPSWSSSDVEEFIASDPVHGPVLKTAREAVNFGLTGSVIGAVSTAGVAWKYSKSLHGAGL
Subjt:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPYVQRPTPLPSWSSSDVEEFIASDPVHGPVLKTAREAVNFGLTGSVIGAVSTAGVAWKYSKSLHGAGL

Query:  SFLAGGAFGWTFGQEIANHWYQLYRLDTMAAQVKFMEWWRNKSEGSS
        SFLAGGAFGWTFGQEIANHWYQLYRLDTMAAQVKFMEWWRNKSEGSS
Subjt:  SFLAGGAFGWTFGQEIANHWYQLYRLDTMAAQVKFMEWWRNKSEGSS

A0A6J1DK58 succinate dehydrogenase subunit 6, mitochondrial

2.1e-74

93.1

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Query:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPYVQRPTPLPSWSSSDVEEFIASDPVHGPVLKTAREAVNFGLTGSVIGAVSTAGVAWKYSKSLHGAGL
        MEDSSSQSFFRKHWEGYKEFWSERFSILDNY+PYVQR  PLPSWSSSDVE FIASDPVHGP LKTAREAVNFGLTGSVIGAVSTAGVAWKYS+SLHGAGL
Subjt:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPYVQRPTPLPSWSSSDVEEFIASDPVHGPVLKTAREAVNFGLTGSVIGAVSTAGVAWKYSKSLHGAGL

Query:  SFLAGGAFGWTFGQEIANHWYQLYRLDTMAAQVKFMEWWRNKSEG
        SFLAGG FGWTFG E+ANHWYQLYRLDTMAAQVKFMEWWRNK+EG
Subjt:  SFLAGGAFGWTFGQEIANHWYQLYRLDTMAAQVKFMEWWRNKSEG

A0A6J1EGQ0 succinate dehydrogenase subunit 6, mitochondrial-like

9.2e-75

93.79

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Query:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPYVQRPTPLPSWSSSDVEEFIASDPVHGPVLKTAREAVNFGLTGSVIGAVSTAGVAWKYSKSLHGAGL
        MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSP+VQR  PLPSWS SDVEEFIASDPVHGPVLKTAREAVNFGLTGS+IGAVSTAGVAWKYS+SLHGAGL
Subjt:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPYVQRPTPLPSWSSSDVEEFIASDPVHGPVLKTAREAVNFGLTGSVIGAVSTAGVAWKYSKSLHGAGL

Query:  SFLAGGAFGWTFGQEIANHWYQLYRLDTMAAQVKFMEWWRNKSEG
        SFLAGGAFGWTFG EIANHWYQLYR+DTM AQVKFMEWWRNKSEG
Subjt:  SFLAGGAFGWTFGQEIANHWYQLYRLDTMAAQVKFMEWWRNKSEG

A0A6J1HQ77 succinate dehydrogenase subunit 6, mitochondrial-like

4.6e-74

93.75

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Query:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPYVQRPTPLPSWSSSDVEEFIASDPVHGPVLKTAREAVNFGLTGSVIGAVSTAGVAWKYSKSLHGAGL
        MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSP+VQR  PLPSWS SDVEEFIASDPVHGPVLKTAREAVNFGLTGS+IGAVSTAGVAWKYS+SLHGAGL
Subjt:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPYVQRPTPLPSWSSSDVEEFIASDPVHGPVLKTAREAVNFGLTGSVIGAVSTAGVAWKYSKSLHGAGL

Query:  SFLAGGAFGWTFGQEIANHWYQLYRLDTMAAQVKFMEWWRNKSE
        SFLAGGAFGWTFG EIANHWYQLYR+DTM AQVKFMEWWRNKSE
Subjt:  SFLAGGAFGWTFGQEIANHWYQLYRLDTMAAQVKFMEWWRNKSE

SwissProt top hits

e value

%identity

Alignment

Q6ZCC4 Succinate dehydrogenase subunit 6, mitochondrial

5.1e-30

45.19

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Query:  KHWEGYKEFWSERFSILDNYSPYVQRPTPLPSWSSSDVEEFIASDPVHGPVLKTAREAVNFGLTGSVIGAVSTAGVAWKYSKSLHGAGLSFLAGGAFGWT
        +H EG K  W++ FS LD +     R  PLP W+ +DV+EFIASDPV+GP LK  RE+  F L G+++G     G+A KYSK+ HG  L+   G   G  
Subjt:  KHWEGYKEFWSERFSILDNYSPYVQRPTPLPSWSSSDVEEFIASDPVHGPVLKTAREAVNFGLTGSVIGAVSTAGVAWKYSKSLHGAGLSFLAGGAFGWT

Query:  FGQEIANHWYQLYRLDTMAAQVKFMEWWRNKSEGS
         G E+A HWYQLY+ D   A ++F+ WW +K  G+
Subjt:  FGQEIANHWYQLYRLDTMAAQVKFMEWWRNKSEGS

Q941A6 Succinate dehydrogenase subunit 6, mitochondrial

5.4e-56

71.94

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Query:  SQSFFRKHWEGYKEFWSERFSILDNYSPYVQRPTPLPSWSSSDVEEFIASDPVHGPVLKTAREAVNFGLTGSVIGAVSTAGVAWKYSKSLHGAGLSFLAG
        S+SF  K+W G K+FWS+R S  +NY+ + +R  PLPSWSSSDVEEFIASDPVHGP LKTAREAV FG+TG+ +GAVSTA  AWKYS+S HGA LSFL G
Subjt:  SQSFFRKHWEGYKEFWSERFSILDNYSPYVQRPTPLPSWSSSDVEEFIASDPVHGPVLKTAREAVNFGLTGSVIGAVSTAGVAWKYSKSLHGAGLSFLAG

Query:  GAFGWTFGQEIANHWYQLYRLDTMAAQVKFMEWWRNKSE
        G FGWTFGQE+ANH  QLY+LDTMAAQVKFMEWW  KS+
Subjt:  GAFGWTFGQEIANHWYQLYRLDTMAAQVKFMEWWRNKSE

Arabidopsis top hits

e value

%identity

Alignment

AT1G08480.1 unknown protein

3.8e-57

71.94

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Query:  SQSFFRKHWEGYKEFWSERFSILDNYSPYVQRPTPLPSWSSSDVEEFIASDPVHGPVLKTAREAVNFGLTGSVIGAVSTAGVAWKYSKSLHGAGLSFLAG
        S+SF  K+W G K+FWS+R S  +NY+ + +R  PLPSWSSSDVEEFIASDPVHGP LKTAREAV FG+TG+ +GAVSTA  AWKYS+S HGA LSFL G
Subjt:  SQSFFRKHWEGYKEFWSERFSILDNYSPYVQRPTPLPSWSSSDVEEFIASDPVHGPVLKTAREAVNFGLTGSVIGAVSTAGVAWKYSKSLHGAGLSFLAG

Query:  GAFGWTFGQEIANHWYQLYRLDTMAAQVKFMEWWRNKSE
        G FGWTFGQE+ANH  QLY+LDTMAAQVKFMEWW  KS+
Subjt:  GAFGWTFGQEIANHWYQLYRLDTMAAQVKFMEWWRNKSE

Sequences

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CDS sequence

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ATGGAAGATTCGTCCTCTCAATCCTTCTTCAGGAAGCACTGGGAAGGCTACAAGGAGTTTTGGTCCGAGAGATTCTCAATTCTCGACAACTATAGCCCCTACGTCCAGCG
CCCGACCCCTCTTCCTTCATGGTCTTCCTCCGATGTCGAGGAATTTATTGCTTCTGACCCCGTTCATGGCCCCGTTTTAAAGACTGCCAGAGAGGCTGTAAACTTTGGTC
TCACAGGAAGTGTTATTGGAGCTGTATCGACTGCAGGTGTTGCATGGAAATACTCAAAAAGTTTACATGGTGCTGGGTTGTCGTTCCTTGCGGGAGGTGCATTCGGTTGG
ACTTTTGGCCAAGAGATAGCAAATCATTGGTATCAACTCTACAGGCTGGACACAATGGCTGCACAAGTTAAGTTTATGGAGTGGTGGAGAAACAAGAGTGAGGGAAGTTC
TTAA

mRNA sequence

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AAACGAGCTTTGAAGAGCGAGATTGGAGAGCTAGAAGAGAGAACAGTTTTCAGGATTCTGATTTCAATCGGATTTAGCTTCTAAAATCTCAATCTTAATCTGTTTTTTGA
GGGAGCAATCATGGAAGATTCGTCCTCTCAATCCTTCTTCAGGAAGCACTGGGAAGGCTACAAGGAGTTTTGGTCCGAGAGATTCTCAATTCTCGACAACTATAGCCCCT
ACGTCCAGCGCCCGACCCCTCTTCCTTCATGGTCTTCCTCCGATGTCGAGGAATTTATTGCTTCTGACCCCGTTCATGGCCCCGTTTTAAAGACTGCCAGAGAGGCTGTA
AACTTTGGTCTCACAGGAAGTGTTATTGGAGCTGTATCGACTGCAGGTGTTGCATGGAAATACTCAAAAAGTTTACATGGTGCTGGGTTGTCGTTCCTTGCGGGAGGTGC
ATTCGGTTGGACTTTTGGCCAAGAGATAGCAAATCATTGGTATCAACTCTACAGGCTGGACACAATGGCTGCACAAGTTAAGTTTATGGAGTGGTGGAGAAACAAGAGTG
AGGGAAGTTCTTAAGACTCTGATTTGCAGTTGAAGCAGCGGAGCGCACACACTGCAGCTGCATCTAAAATAAAAATGTAAGTGCAACCTTGTTGAAATACAATGGTCGAT
TGGTTTGTGTTGTGATGAACTCTTCTTCCAACCTTTCAAGTTTAGAAAAGTACTGTCTCCTTTTTTATCTTCTGGAAATGACTCATTCATTTGCAAGCTCGTTAGAGAAT
GTACCCATCTTTACCAAATAACCCCAATTTTGGGTGGCTGTTAGGGTCTAAAGCATGTCCAAAATGGATACACATAGTTTTGTTGAAAGAATATTGGCTAAATTATATAT
AAATTGGATAACCTTGAAATGTGCTTAGGATAAAAAATAACTGCAAGGTTGCAATAATATGCTTGACCTTTTAAAAATGTTTTGAAACTATCCTTAGAGTAGAAGTTTGA
TTGAAAGAAACTGAAATTTGGAATGGTGTGGCAGAGATCTAGGATGAAAGTTGAGGCACTATTTCAGATCATTTTGACACAGTATCATATTTCAATTTTTGCTAAATATT
CCAATGGCTGTCCA

Protein sequence

Show/hide protein sequence

MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPYVQRPTPLPSWSSSDVEEFIASDPVHGPVLKTAREAVNFGLTGSVIGAVSTAGVAWKYSKSLHGAGLSFLAGGAFGW
TFGQEIANHWYQLYRLDTMAAQVKFMEWWRNKSEGSS

IVF0015582 (gene) of Melon (IVF77) v1 genome