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IVF0015606 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0015606
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotran_gag_3 domain-containing protein
Genome locationchr11:16134037..16134288
RNA-Seq ExpressionIVF0015606
SyntenyIVF0015606
Gene Ontology termsNA
InterPro domainsIPR029472 - Retrotransposon Copia-like, N-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0056742.1 uncharacterized protein E6C27_scaffold486G00140 [Cucumis melo var. makuwa]2.52e-1966.67Show/hide
Query:  MATTNPTLHPRSSNAPEGSSSTINPTPTPSSVIAMYENPYYLHQFGSTNLILVFNLLTESNYTSWN
        MA +NP L P SS+  E SSSTINP PTP SV+ +YENPYYLH   +TNLILV ++LTES+YTSWN
Subjt:  MATTNPTLHPRSSNAPEGSSSTINPTPTPSSVIAMYENPYYLHQFGSTNLILVFNLLTESNYTSWN

KAA0065335.1 uncharacterized protein E6C27_scaffold301G00020 [Cucumis melo var. makuwa]7.63e-5097.59Show/hide
Query:  MATTNPTLHPRSSNAPEGSSSTINPTPTPSSVIAMYENPYYLHQFGSTNLILVFNLLTESNYTSWNRAFILGLTIKYKVYFID
        MATTNPTLHPRSSNAPEGSSST NPTPTPSSVIAMYENPYYLHQFGSTNLILVFNLLTESNYTSWNRAFILGLTIKYKV FID
Subjt:  MATTNPTLHPRSSNAPEGSSSTINPTPTPSSVIAMYENPYYLHQFGSTNLILVFNLLTESNYTSWNRAFILGLTIKYKVYFID

KAA0066235.1 uncharacterized protein E6C27_scaffold21G002610 [Cucumis melo var. makuwa]2.90e-1970.31Show/hide
Query:  MATTNPTLHPRSSNAPEGSSSTINPTPTPSSVIAMYENPYYLHQFGSTNLILVFNLLTESNYTS
        M  TNPTL   SS APEGSSST N TPTP S+IAMYEN YYLH   S NLIL+ +LL ESNYTS
Subjt:  MATTNPTLHPRSSNAPEGSSSTINPTPTPSSVIAMYENPYYLHQFGSTNLILVFNLLTESNYTS

TYJ96600.1 uncharacterized protein E5676_scaffold464G00020 [Cucumis melo var. makuwa]5.57e-52100Show/hide
Query:  MATTNPTLHPRSSNAPEGSSSTINPTPTPSSVIAMYENPYYLHQFGSTNLILVFNLLTESNYTSWNRAFILGLTIKYKVYFID
        MATTNPTLHPRSSNAPEGSSSTINPTPTPSSVIAMYENPYYLHQFGSTNLILVFNLLTESNYTSWNRAFILGLTIKYKVYFID
Subjt:  MATTNPTLHPRSSNAPEGSSSTINPTPTPSSVIAMYENPYYLHQFGSTNLILVFNLLTESNYTSWNRAFILGLTIKYKVYFID

TYK04347.1 uncharacterized protein E5676_scaffold675G00100 [Cucumis melo var. makuwa]6.64e-3171.08Show/hide
Query:  MATTNPTLHPRSSNAPEGSSSTINPTPTPSSVIAMYENPYYLHQFGSTNLILVFNLLTESNYTSWNRAFILGLTIKYKVYFID
        MA +NP L P SS+ PE SSS INPTPTP SVIA+YEN  YLH   +TNLILV +LL ESNYTSWN AF+LGLT+K KVYFID
Subjt:  MATTNPTLHPRSSNAPEGSSSTINPTPTPSSVIAMYENPYYLHQFGSTNLILVFNLLTESNYTSWNRAFILGLTIKYKVYFID

TrEMBL top hitse value%identityAlignment
A0A5A7ULN0 Uncharacterized protein3.3e-1366.67Show/hide
Query:  MATTNPTLHPRSSNAPEGSSSTINPTPTPSSVIAMYENPYYLHQFGSTNLILVFNLLTESNYTSWN
        MA +NP L P SS+  E SSSTINP PTP SV+ +YENPYYLH   +TNLILV ++LTES+YTSWN
Subjt:  MATTNPTLHPRSSNAPEGSSSTINPTPTPSSVIAMYENPYYLHQFGSTNLILVFNLLTESNYTSWN

A0A5A7VHR8 Retrotran_gag_3 domain-containing protein1.6e-3697.59Show/hide
Query:  MATTNPTLHPRSSNAPEGSSSTINPTPTPSSVIAMYENPYYLHQFGSTNLILVFNLLTESNYTSWNRAFILGLTIKYKVYFID
        MATTNPTLHPRSSNAPEGSSST NPTPTPSSVIAMYENPYYLHQFGSTNLILVFNLLTESNYTSWNRAFILGLTIKYKV FID
Subjt:  MATTNPTLHPRSSNAPEGSSSTINPTPTPSSVIAMYENPYYLHQFGSTNLILVFNLLTESNYTSWNRAFILGLTIKYKVYFID

A0A5A7VKF4 Uncharacterized protein3.3e-1370.31Show/hide
Query:  MATTNPTLHPRSSNAPEGSSSTINPTPTPSSVIAMYENPYYLHQFGSTNLILVFNLLTESNYTS
        M  TNPTL   SS APEGSSST N TPTP S+IAMYEN YYLH   S NLIL+ +LL ESNYTS
Subjt:  MATTNPTLHPRSSNAPEGSSSTINPTPTPSSVIAMYENPYYLHQFGSTNLILVFNLLTESNYTS

A0A5D3B9Q7 Retrotran_gag_3 domain-containing protein3.9e-38100Show/hide
Query:  MATTNPTLHPRSSNAPEGSSSTINPTPTPSSVIAMYENPYYLHQFGSTNLILVFNLLTESNYTSWNRAFILGLTIKYKVYFID
        MATTNPTLHPRSSNAPEGSSSTINPTPTPSSVIAMYENPYYLHQFGSTNLILVFNLLTESNYTSWNRAFILGLTIKYKVYFID
Subjt:  MATTNPTLHPRSSNAPEGSSSTINPTPTPSSVIAMYENPYYLHQFGSTNLILVFNLLTESNYTSWNRAFILGLTIKYKVYFID

A0A5D3BXU2 Retrotran_gag_3 domain-containing protein1.8e-2271.08Show/hide
Query:  MATTNPTLHPRSSNAPEGSSSTINPTPTPSSVIAMYENPYYLHQFGSTNLILVFNLLTESNYTSWNRAFILGLTIKYKVYFID
        MA +NP L P SS+ PE SSS INPTPTP SVIA+YEN  YLH   +TNLILV +LL ESNYTSWN AF+LGLT+K KVYFID
Subjt:  MATTNPTLHPRSSNAPEGSSSTINPTPTPSSVIAMYENPYYLHQFGSTNLILVFNLLTESNYTSWNRAFILGLTIKYKVYFID

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTACGACAAACCCCACTCTTCATCCTCGTTCATCTAATGCTCCTGAAGGCTCATCTTCGACCATCAACCCCACTCCAACACCTTCTTCCGTCATCGCAATGTATGA
AAACCCATACTATCTTCATCAATTTGGTAGCACAAACCTAATCTTGGTTTTTAATCTCCTAACTGAATCAAATTACACCTCCTGGAATCGAGCATTCATCCTTGGCCTCA
CCATCAAATACAAAGTCTACTTCATTGACTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTACGACAAACCCCACTCTTCATCCTCGTTCATCTAATGCTCCTGAAGGCTCATCTTCGACCATCAACCCCACTCCAACACCTTCTTCCGTCATCGCAATGTATGA
AAACCCATACTATCTTCATCAATTTGGTAGCACAAACCTAATCTTGGTTTTTAATCTCCTAACTGAATCAAATTACACCTCCTGGAATCGAGCATTCATCCTTGGCCTCA
CCATCAAATACAAAGTCTACTTCATTGACTAA
Protein sequenceShow/hide protein sequence
MATTNPTLHPRSSNAPEGSSSTINPTPTPSSVIAMYENPYYLHQFGSTNLILVFNLLTESNYTSWNRAFILGLTIKYKVYFID