; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0015633 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0015633
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGlycine rich RNA binding protein
Genome locationchr08:28626130..28628316
RNA-Seq ExpressionIVF0015633
SyntenyIVF0015633
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008447620.1 PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial [Cucumis melo]2.26e-96100Show/hide
Query:  MAFFSTVRRVLSGSSPSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAFSSFGQLVDAKVVTDRATGRSKGFAFVTYSTIEEAERARQEM
        MAFFSTVRRVLSGSSPSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAFSSFGQLVDAKVVTDRATGRSKGFAFVTYSTIEEAERARQEM
Subjt:  MAFFSTVRRVLSGSSPSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAFSSFGQLVDAKVVTDRATGRSKGFAFVTYSTIEEAERARQEM

Query:  NAKFLDGWVIFVDPAKPREPRPPPQPQSETSEFGIRTNKTIGWCG
        NAKFLDGWVIFVDPAKPREPRPPPQPQSETSEFGIRTNKTIGWCG
Subjt:  NAKFLDGWVIFVDPAKPREPRPPPQPQSETSEFGIRTNKTIGWCG

XP_022143719.1 organelle RRM domain-containing protein 2, mitochondrial [Momordica charantia]6.17e-8586.9Show/hide
Query:  MAFFSTVRRVLSGSSPSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAFSSFGQLVDAKVVTDRATGRSKGFAFVTYSTIEEAERARQEM
        MAF S+VRRVL+GSS S++SSIL+SQW  +RLSSTLTSPKLFISGLSRLTTDEKL+EAFSSFGQLV+AKV+TDRATGRSKGF FVTY+TIE+AE+AR+ M
Subjt:  MAFFSTVRRVLSGSSPSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAFSSFGQLVDAKVVTDRATGRSKGFAFVTYSTIEEAERARQEM

Query:  NAKFLDGWVIFVDPAKPREPRPPPQPQSETSEFGIRTNKTIGWCG
        NAKFLDGWVIFVDPAKPREPRPPPQPQSETSEFGIRTNKTIGWCG
Subjt:  NAKFLDGWVIFVDPAKPREPRPPPQPQSETSEFGIRTNKTIGWCG

XP_022972736.1 organelle RRM domain-containing protein 2, mitochondrial [Cucurbita maxima]3.54e-8286.49Show/hide
Query:  MAFFSTVRRVLSGSSPSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAFSSFGQLVDAKVVTDRATGRSKGFAFVTYSTIEEAERARQEM
        MAFFSTVRRVL+GSS  SSSS+LRSQW + RLSSTLTSPKLFISGLSRLTTDEKL+EAF+SFGQLV+AKV+TDRATGRSKGF FVTYSTIEEAE+AR+ M
Subjt:  MAFFSTVRRVLSGSSPSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAFSSFGQLVDAKVVTDRATGRSKGFAFVTYSTIEEAERARQEM

Query:  NAKFLDGWVIFVDPAKPREPRPPPQPQ---SETSEFGIRTNKTIGWCG
        NAKFLDGWVIFVDPAKPREPRPPP PQ   +ETSEFGIRTNKTIGWCG
Subjt:  NAKFLDGWVIFVDPAKPREPRPPPQPQ---SETSEFGIRTNKTIGWCG

XP_031739912.1 organelle RRM domain-containing protein 2, mitochondrial [Cucumis sativus]1.77e-9195.89Show/hide
Query:  MAFFSTVRRVLSGSSPSSSSS-ILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAFSSFGQLVDAKVVTDRATGRSKGFAFVTYSTIEEAERARQE
        MAFFSTVRRVL+GSS SSSSS ILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAFSSFGQLVDAKVVTDRATGRSKGFAFVTYSTI+EAE+AR+E
Subjt:  MAFFSTVRRVLSGSSPSSSSS-ILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAFSSFGQLVDAKVVTDRATGRSKGFAFVTYSTIEEAERARQE

Query:  MNAKFLDGWVIFVDPAKPREPRPPPQPQSETSEFGIRTNKTIGWCG
        MNAKFLDGWVIFVDPAKPREPRPPPQPQSETSEFGIRTNKTIGWCG
Subjt:  MNAKFLDGWVIFVDPAKPREPRPPPQPQSETSEFGIRTNKTIGWCG

XP_038881167.1 organelle RRM domain-containing protein 2, mitochondrial [Benincasa hispida]5.92e-8387.16Show/hide
Query:  MAFFSTVRRVLSGSSPSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAFSSFGQLVDAKVVTDRATGRSKGFAFVTYSTIEEAERARQEM
        MAFFSTVRRVL+GSS   SSSILRSQW AVRLSSTLTSP+LFISGLSRLTTDEKL+EAFSSFGQLV+AKV+TDR TGRSKGF FV+Y+TIEEAE+AR+EM
Subjt:  MAFFSTVRRVLSGSSPSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAFSSFGQLVDAKVVTDRATGRSKGFAFVTYSTIEEAERARQEM

Query:  NAKFLDGWVIFVDPAKPREPR---PPPQPQSETSEFGIRTNKTIGWCG
        NAKFLDGWVIFVDPAKPREPR   PPPQPQ ETSEFGIRTNKTIGWCG
Subjt:  NAKFLDGWVIFVDPAKPREPR---PPPQPQSETSEFGIRTNKTIGWCG

TrEMBL top hitse value%identityAlignment
A0A1S3BHV3 glycine-rich RNA-binding protein 4, mitochondrial1.7e-73100Show/hide
Query:  MAFFSTVRRVLSGSSPSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAFSSFGQLVDAKVVTDRATGRSKGFAFVTYSTIEEAERARQEM
        MAFFSTVRRVLSGSSPSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAFSSFGQLVDAKVVTDRATGRSKGFAFVTYSTIEEAERARQEM
Subjt:  MAFFSTVRRVLSGSSPSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAFSSFGQLVDAKVVTDRATGRSKGFAFVTYSTIEEAERARQEM

Query:  NAKFLDGWVIFVDPAKPREPRPPPQPQSETSEFGIRTNKTIGWCG
        NAKFLDGWVIFVDPAKPREPRPPPQPQSETSEFGIRTNKTIGWCG
Subjt:  NAKFLDGWVIFVDPAKPREPRPPPQPQSETSEFGIRTNKTIGWCG

A0A2I4DKH7 organelle RRM domain-containing protein 2, mitochondrial1.9e-5677.24Show/hide
Query:  MAFFSTVRRVLSGSSPSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAFSSFGQLVDAKVVTDRATGRSKGFAFVTYSTIEEAERARQEM
        MAF S++RR+LSGS  S++SSIL SQ+ ++RL++TLTSPKLFISGLSRLTTDEKL+EAFS FGQL+DAKV+ DRATGRSKGF FVTY +IEEAE+AR+ M
Subjt:  MAFFSTVRRVLSGSSPSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAFSSFGQLVDAKVVTDRATGRSKGFAFVTYSTIEEAERARQEM

Query:  NAKFLDGWVIFVDPAKPREPRPPPQPQSETSEFGIRTNKTIGWCG
        NAKFLDGWVIFVDPAKPREPRPPPQP  E+S+ G RTNKT+GWCG
Subjt:  NAKFLDGWVIFVDPAKPREPRPPPQPQSETSEFGIRTNKTIGWCG

A0A6J1CQ59 organelle RRM domain-containing protein 2, mitochondrial8.5e-6586.9Show/hide
Query:  MAFFSTVRRVLSGSSPSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAFSSFGQLVDAKVVTDRATGRSKGFAFVTYSTIEEAERARQEM
        MAF S+VRRVL+GSS S++SSIL+SQW  +RLSSTLTSPKLFISGLSRLTTDEKL+EAFSSFGQLV+AKV+TDRATGRSKGF FVTY+TIE+AE+AR+ M
Subjt:  MAFFSTVRRVLSGSSPSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAFSSFGQLVDAKVVTDRATGRSKGFAFVTYSTIEEAERARQEM

Query:  NAKFLDGWVIFVDPAKPREPRPPPQPQSETSEFGIRTNKTIGWCG
        NAKFLDGWVIFVDPAKPREPRPPPQPQSETSEFGIRTNKTIGWCG
Subjt:  NAKFLDGWVIFVDPAKPREPRPPPQPQSETSEFGIRTNKTIGWCG

A0A6J1HDN1 organelle RRM domain-containing protein 2, mitochondrial1.8e-6288.44Show/hide
Query:  MAFFSTVRRVLSGSSPSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAFSSFGQLVDAKVVTDRATGRSKGFAFVTYSTIEEAERARQEM
        MAFFSTVRRVL+GS  SSSSS+LRSQW   RLSSTLTSPKLFISGLSRLTTDEKL+EAF+SFGQLV+AKV+TDRATGRSKGF FVTYSTIEEAE+AR+ M
Subjt:  MAFFSTVRRVLSGSSPSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAFSSFGQLVDAKVVTDRATGRSKGFAFVTYSTIEEAERARQEM

Query:  NAKFLDGWVIFVDPAKPREPR-PPPQPQS-ETSEFGIRTNKTIGWCG
        NAKFLDGWVIFVDPAKPREPR PPPQPQS ETSEFGIRTNKTIGWCG
Subjt:  NAKFLDGWVIFVDPAKPREPR-PPPQPQS-ETSEFGIRTNKTIGWCG

A0A6J1I6S8 organelle RRM domain-containing protein 2, mitochondrial1.0e-6286.49Show/hide
Query:  MAFFSTVRRVLSGSSPSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAFSSFGQLVDAKVVTDRATGRSKGFAFVTYSTIEEAERARQEM
        MAFFSTVRRVL+GS  SSSSS+LRSQW + RLSSTLTSPKLFISGLSRLTTDEKL+EAF+SFGQLV+AKV+TDRATGRSKGF FVTYSTIEEAE+AR+ M
Subjt:  MAFFSTVRRVLSGSSPSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAFSSFGQLVDAKVVTDRATGRSKGFAFVTYSTIEEAERARQEM

Query:  NAKFLDGWVIFVDPAKPREPRPPPQPQ---SETSEFGIRTNKTIGWCG
        NAKFLDGWVIFVDPAKPREPRPPP PQ   +ETSEFGIRTNKTIGWCG
Subjt:  NAKFLDGWVIFVDPAKPREPRPPPQPQ---SETSEFGIRTNKTIGWCG

SwissProt top hitse value%identityAlignment
Q8L440 Organelle RRM domain-containing protein 1, chloroplastic3.2e-1645.63Show/hide
Query:  SSTLTSPKLFISGLSRLTTDEKLREAFSSFGQLVDAKVVTDRATGRSKGFAFVTYSTIEEAERARQEMNAKFLDGWVIFVDPAKPREPRPPPQPQSETSE
        S  + + KLFI+GLS  T+++ LR AF  FG+LV+ K++ D+ + RSKG+AF+ Y+T E A  A +EMN K ++GW+I VD AK    +P  Q +S+ S 
Subjt:  SSTLTSPKLFISGLSRLTTDEKLREAFSSFGQLVDAKVVTDRATGRSKGFAFVTYSTIEEAERARQEMNAKFLDGWVIFVDPAKPREPRPPPQPQSETSE

Query:  FGI
        FG+
Subjt:  FGI

Q9FFZ6 Small RNA-binding protein 11, chloroplastic9.2e-1647.42Show/hide
Query:  KLFISGLSRLTTDEKLREAFSSFGQLVDAKVVTDRATGRSKGFAFVTYSTIEEAERARQEMNAKFLDGWVIFVDPAKPRE----------PRPPPQP
        KLFI GLS  TT++ L EAFS  GQ+V+A++V DR + RSKGF FVT+++ +EA++A  E N + L+G  IFVD AK ++           R PP P
Subjt:  KLFISGLSRLTTDEKLREAFSSFGQLVDAKVVTDRATGRSKGFAFVTYSTIEEAERARQEMNAKFLDGWVIFVDPAKPRE----------PRPPPQP

Q9FIU6 Organelle RRM domain-containing protein 2, mitochondrial2.3e-2255.32Show/hide
Query:  SPKLFISGLSRLTTDEKLREAFSSFGQLVDAKVVTDRATGRSKGFAFVTYSTIEEAERARQEMNAKFLDGWVIFVDPAKPREPRPPPQPQSETS
        S  LF+SGLS+ TT E LR AF+ FG++ DAKVVTDR +G SKGF FV Y+T+E++ +    M+ KFLDGWVIF + A+PRE     QPQ+  S
Subjt:  SPKLFISGLSRLTTDEKLREAFSSFGQLVDAKVVTDRATGRSKGFAFVTYSTIEEAERARQEMNAKFLDGWVIFVDPAKPREPRPPPQPQSETS

Q9FX45 Organelle RRM domain-containing protein 6, chloroplastic3.2e-1643.41Show/hide
Query:  SGSSPSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAFSSFGQLVDAKVVTDRATGRSKGFAFVTYSTIEEAERARQEMNAKFLDGWVIF
        S SSP SSSS  ++              KL++SGLS  TT++ LR+ F  FG L+   +V D+   R KGFAF+ Y T EEA +A Q M+ KFLDG VIF
Subjt:  SGSSPSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAFSSFGQLVDAKVVTDRATGRSKGFAFVTYSTIEEAERARQEMNAKFLDGWVIF

Query:  VDPAKPREP-------RPPPQPQSETSEF
        V+ AK R         R  P+PQS+   F
Subjt:  VDPAKPREP-------RPPPQPQSETSEF

Q9FZ84 Glycine-rich RNA-binding protein 6, mitochondrial1.2e-1555.56Show/hide
Query:  TLTSPKLFISGLSRLTTDEKLREAFSSFGQLVDAKVVTDRATGRSKGFAFVTYSTIEEAERARQEMNAKFLDGWVIFVDPA
        +LT  K+F+ GLS  T  E L+EAF SFG++VDA VV DR +G S+GF FVTY +IE A  A Q M  K LDG +I V PA
Subjt:  TLTSPKLFISGLSRLTTDEKLREAFSSFGQLVDAKVVTDRATGRSKGFAFVTYSTIEEAERARQEMNAKFLDGWVIFVDPA

Arabidopsis top hitse value%identityAlignment
AT1G73530.1 RNA-binding (RRM/RBD/RNP motifs) family protein2.3e-1743.41Show/hide
Query:  SGSSPSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAFSSFGQLVDAKVVTDRATGRSKGFAFVTYSTIEEAERARQEMNAKFLDGWVIF
        S SSP SSSS  ++              KL++SGLS  TT++ LR+ F  FG L+   +V D+   R KGFAF+ Y T EEA +A Q M+ KFLDG VIF
Subjt:  SGSSPSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAFSSFGQLVDAKVVTDRATGRSKGFAFVTYSTIEEAERARQEMNAKFLDGWVIF

Query:  VDPAKPREP-------RPPPQPQSETSEF
        V+ AK R         R  P+PQS+   F
Subjt:  VDPAKPREP-------RPPPQPQSETSEF

AT2G37510.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.9e-4867.81Show/hide
Query:  MAFFSTVRRVLSGSSPSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAFSSFGQLVDAKVVTDRATGRSKGFAFVTYSTIEEAERARQEM
        MAF S+ RR+++G     SSS+L S    VR  STLTSP+LF+SGLSRLTT+EKL++AF+SFGQLVDA+V+TDR +GRSKGF FVTY+TIE+AE+A+ EM
Subjt:  MAFFSTVRRVLSGSSPSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAFSSFGQLVDAKVVTDRATGRSKGFAFVTYSTIEEAERARQEM

Query:  NAKFLDGWVIFVDPAKPREPRPPPQ--PQSETSEFGIRTNKTIGWC
        NAKFLDGWVIFVDPA+PREPR P Q  P   +SE G  TNKTIGWC
Subjt:  NAKFLDGWVIFVDPAKPREPRPPPQ--PQSETSEFGIRTNKTIGWC

AT3G20930.1 RNA-binding (RRM/RBD/RNP motifs) family protein2.3e-1745.63Show/hide
Query:  SSTLTSPKLFISGLSRLTTDEKLREAFSSFGQLVDAKVVTDRATGRSKGFAFVTYSTIEEAERARQEMNAKFLDGWVIFVDPAKPREPRPPPQPQSETSE
        S  + + KLFI+GLS  T+++ LR AF  FG+LV+ K++ D+ + RSKG+AF+ Y+T E A  A +EMN K ++GW+I VD AK    +P  Q +S+ S 
Subjt:  SSTLTSPKLFISGLSRLTTDEKLREAFSSFGQLVDAKVVTDRATGRSKGFAFVTYSTIEEAERARQEMNAKFLDGWVIFVDPAKPREPRPPPQPQSETSE

Query:  FGI
        FG+
Subjt:  FGI

AT5G06210.1 RNA binding (RRM/RBD/RNP motifs) family protein6.5e-1747.42Show/hide
Query:  KLFISGLSRLTTDEKLREAFSSFGQLVDAKVVTDRATGRSKGFAFVTYSTIEEAERARQEMNAKFLDGWVIFVDPAKPRE----------PRPPPQP
        KLFI GLS  TT++ L EAFS  GQ+V+A++V DR + RSKGF FVT+++ +EA++A  E N + L+G  IFVD AK ++           R PP P
Subjt:  KLFISGLSRLTTDEKLREAFSSFGQLVDAKVVTDRATGRSKGFAFVTYSTIEEAERARQEMNAKFLDGWVIFVDPAKPRE----------PRPPPQP

AT5G54580.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.6e-2355.32Show/hide
Query:  SPKLFISGLSRLTTDEKLREAFSSFGQLVDAKVVTDRATGRSKGFAFVTYSTIEEAERARQEMNAKFLDGWVIFVDPAKPREPRPPPQPQSETS
        S  LF+SGLS+ TT E LR AF+ FG++ DAKVVTDR +G SKGF FV Y+T+E++ +    M+ KFLDGWVIF + A+PRE     QPQ+  S
Subjt:  SPKLFISGLSRLTTDEKLREAFSSFGQLVDAKVVTDRATGRSKGFAFVTYSTIEEAERARQEMNAKFLDGWVIFVDPAKPREPRPPPQPQSETS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTTCTTCTCCACCGTAAGGCGCGTTCTTAGTGGATCTTCTCCTTCTTCTTCCTCTTCCATTCTCCGATCCCAGTGGAATGCCGTTCGTCTCAGCTCAACTCTCAC
ATCCCCTAAGCTCTTCATCAGTGGTCTTTCGAGATTAACAACAGATGAGAAGCTCCGAGAAGCCTTTTCTTCCTTTGGTCAGCTTGTAGATGCAAAGGTTGTAACTGATA
GGGCGACGGGAAGATCGAAGGGATTCGCCTTCGTAACCTACAGTACAATAGAAGAGGCTGAGAGAGCTAGACAAGAAATGAATGCAAAGTTTCTTGATGGATGGGTTATT
TTTGTTGACCCTGCCAAACCCAGGGAGCCTAGGCCTCCTCCACAGCCTCAATCTGAGACCTCTGAATTTGGTATCAGAACAAACAAGACAATTGGTTGGTGTGGATGA
mRNA sequenceShow/hide mRNA sequence
GAAACATTTGAACAAAGAAGTAAAGGGCGACAGTTGTGTAAGCCAAAACTCAAACCCTAAACCCTAAAAACTCTCCATCGCAGCGGTCTACCCGTTTGCATCGGCCGGTT
GAATCATATGGCTTTCTTCTCCACCGTAAGGCGCGTTCTTAGTGGATCTTCTCCTTCTTCTTCCTCTTCCATTCTCCGATCCCAGTGGAATGCCGTTCGTCTCAGCTCAA
CTCTCACATCCCCTAAGCTCTTCATCAGTGGTCTTTCGAGATTAACAACAGATGAGAAGCTCCGAGAAGCCTTTTCTTCCTTTGGTCAGCTTGTAGATGCAAAGGTTGTA
ACTGATAGGGCGACGGGAAGATCGAAGGGATTCGCCTTCGTAACCTACAGTACAATAGAAGAGGCTGAGAGAGCTAGACAAGAAATGAATGCAAAGTTTCTTGATGGATG
GGTTATTTTTGTTGACCCTGCCAAACCCAGGGAGCCTAGGCCTCCTCCACAGCCTCAATCTGAGACCTCTGAATTTGGTATCAGAACAAACAAGACAATTGGTTGGTGTG
GATGATTGCTTGCAGAATTTTTGAAATCTCATAGCATTTGGTCATTTTTTCCAATTGCATATGGTTGAGTCTGATGTATGTTCTTCATCCATGAGTACTATAGATAAAAT
TCATGAACACCACTCTCAAGGTGGCCTCAAAACTGCCAGAAATTGGGCATTATTTTGTTATAGATATGGATTTGGATTCAGAAAAGTATTTACTTACCTT
Protein sequenceShow/hide protein sequence
MAFFSTVRRVLSGSSPSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAFSSFGQLVDAKVVTDRATGRSKGFAFVTYSTIEEAERARQEMNAKFLDGWVI
FVDPAKPREPRPPPQPQSETSEFGIRTNKTIGWCG