; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0015665 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0015665
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionTransposon Tf2-9 polyprotein
Genome locationtig00001378:325363..325677
RNA-Seq ExpressionIVF0015665
SyntenyIVF0015665
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsIPR041373 - Reverse transcriptase, RNase H-like domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042009.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]1.56e-4081.52Show/hide
Query:  VVLVVQRWRPYLLETRFIVKTDQKSLKFLLEQRVVQLQYQKWVAKLLGYSFEVVYKPGLESKAADALSRKPLDVQFCGISALVLIDLKIIKE
        VVL VQ WRPYLL TRFIVKTDQKSLKFLLEQR +Q QYQKWVAKLL YSF+VVYKPGLE++AADALSRKP +V  CGISA +LIDLK IKE
Subjt:  VVLVVQRWRPYLLETRFIVKTDQKSLKFLLEQRVVQLQYQKWVAKLLGYSFEVVYKPGLESKAADALSRKPLDVQFCGISALVLIDLKIIKE
KAA0054138.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]5.88e-4277.66Show/hide
Query:  MAVVLVVQRWRPYLLETRFIVKTDQKSLKFLLEQRVVQLQYQKWVAKLLGYSFEVVYKPGLESKAADALSRKPLDVQFCGISALVLIDLKIIKE
        MAVVL VQRWRPYLL  RF+VKTDQKS KFLLEQR +Q QYQKWVAKLLGYSFEV+YKPGLE+KAADALSRKP+++  CG+SA  L+DL  IKE
Subjt:  MAVVLVVQRWRPYLLETRFIVKTDQKSLKFLLEQRVVQLQYQKWVAKLLGYSFEVVYKPGLESKAADALSRKPLDVQFCGISALVLIDLKIIKE
KAA0067391.1 transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa]7.85e-4181.05Show/hide
Query:  MAVVLVVQRWRPYLLETRFIVKTDQKSLKFLLEQRVVQLQYQKWVAKLLGYSFEVVYKPGLESKAADALSRKPLDVQFCG-ISALVLIDLKIIKE
        MAVVL VQ W PYLL T FIVKTD+KSLK LLEQRV+Q QYQKWVAKLL YSFEVVYKPGLE+KAADALSRKPLDVQ CG +SA +LI LK IKE
Subjt:  MAVVLVVQRWRPYLLETRFIVKTDQKSLKFLLEQRVVQLQYQKWVAKLLGYSFEVVYKPGLESKAADALSRKPLDVQFCG-ISALVLIDLKIIKE
TYK14862.1 transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa]1.81e-4073.08Show/hide
Query:  MAVVLVVQRWRPYLLETRFIVKTDQKSLKFLLEQRVVQLQYQKWVAKLLGYSFEVVYKPGLESKAADALSRKPLDVQFCGISALVLIDLKIIKEGWRRMR
        MAV+L VQRWRPYLL  +FIVKTDQKSLKFLLEQRV+Q QYQKWV+KLLGYSFEVVYKPGLE+KAADALSRKP D+Q   ISA  L+DL++IKE  ++  
Subjt:  MAVVLVVQRWRPYLLETRFIVKTDQKSLKFLLEQRVVQLQYQKWVAKLLGYSFEVVYKPGLESKAADALSRKPLDVQFCGISALVLIDLKIIKEGWRRMR

Query:  NFRK
          +K
Subjt:  NFRK
TYK30692.1 RNA-directed DNA polymerase (Reverse transcriptase) [Cucumis melo var. makuwa]1.33e-4487.23Show/hide
Query:  MAVVLVVQRWRPYLLETRFIVKTDQKSLKFLLEQRVVQLQYQKWVAKLLGYSFEVVYKPGLESKAADALSRKPLDVQFCGISALVLIDLKIIKE
        MAVVL VQ WRPYLL TRFIVKTDQKSLKFLLEQRVVQ QYQKWVAKLLGYSFEVVYKPGL++KAADALSRKP D+QFCGI+A VL+DLKII+E
Subjt:  MAVVLVVQRWRPYLLETRFIVKTDQKSLKFLLEQRVVQLQYQKWVAKLLGYSFEVVYKPGLESKAADALSRKPLDVQFCGISALVLIDLKIIKE
TrEMBL top hitse value%identityAlignment
A0A5A7TVZ8 Transposon Ty3-G Gag-Pol polyprotein1.8e-3275Show/hide
Query:  MAVVLVVQRWRPYLLETRFIVKTDQKSLKFLLEQRVVQLQYQKWVAKLLGYSFEVVYKPGLESKAADALSRKPLDVQFCGISALVLIDLKIIKEGWRRMR
        M VVL VQRWRPYLL T+F+VKT+QKS KFLLEQRVVQ QYQKWV+KLLGYSFEVVYKPGLE+KAADALSRKP D+Q   ISA  L+DLKIIKE   R  
Subjt:  MAVVLVVQRWRPYLLETRFIVKTDQKSLKFLLEQRVVQLQYQKWVAKLLGYSFEVVYKPGLESKAADALSRKPLDVQFCGISALVLIDLKIIKEGWRRMR

Query:  NFRK
          +K
Subjt:  NFRK
A0A5A7UGG9 Transposon Ty3-I Gag-Pol polyprotein1.4e-3277.66Show/hide
Query:  MAVVLVVQRWRPYLLETRFIVKTDQKSLKFLLEQRVVQLQYQKWVAKLLGYSFEVVYKPGLESKAADALSRKPLDVQFCGISALVLIDLKIIKE
        MAVVL VQRWRPYLL  RF+VKTDQKS KFLLEQR +Q QYQKWVAKLLGYSFEV+YKPGLE+KAADALSRKP+++  CG+SA  L+DL  IKE
Subjt:  MAVVLVVQRWRPYLLETRFIVKTDQKSLKFLLEQRVVQLQYQKWVAKLLGYSFEVVYKPGLESKAADALSRKPLDVQFCGISALVLIDLKIIKE
A0A5D3CTT4 Transposon Tf2-1 polyprotein isoform X18.1e-3373.08Show/hide
Query:  MAVVLVVQRWRPYLLETRFIVKTDQKSLKFLLEQRVVQLQYQKWVAKLLGYSFEVVYKPGLESKAADALSRKPLDVQFCGISALVLIDLKIIKEGWRRMR
        MAV+L VQRWRPYLL  +FIVKTDQKSLKFLLEQRV+Q QYQKWV+KLLGYSFEVVYKPGLE+KAADALSRKP D+Q   ISA  L+DL++IKE  ++  
Subjt:  MAVVLVVQRWRPYLLETRFIVKTDQKSLKFLLEQRVVQLQYQKWVAKLLGYSFEVVYKPGLESKAADALSRKPLDVQFCGISALVLIDLKIIKEGWRRMR

Query:  NFRK
          +K
Subjt:  NFRK
A0A5D3E0L0 Transposon Tf2-1 polyprotein isoform X16.2e-3373.08Show/hide
Query:  MAVVLVVQRWRPYLLETRFIVKTDQKSLKFLLEQRVVQLQYQKWVAKLLGYSFEVVYKPGLESKAADALSRKPLDVQFCGISALVLIDLKIIKEGWRRMR
        +AVVL VQRWRPYLLE +FIVKTDQKSLKFLLEQRV+Q QYQKWV+KLLGYSFEVVYKPGLE+KA DALSRKP D+Q   ISA  L+DL++IKE   +  
Subjt:  MAVVLVVQRWRPYLLETRFIVKTDQKSLKFLLEQRVVQLQYQKWVAKLLGYSFEVVYKPGLESKAADALSRKPLDVQFCGISALVLIDLKIIKEGWRRMR

Query:  NFRK
          +K
Subjt:  NFRK
A0A5D3E461 RNA-directed DNA polymerase (Reverse transcriptase)1.2e-3687.23Show/hide
Query:  MAVVLVVQRWRPYLLETRFIVKTDQKSLKFLLEQRVVQLQYQKWVAKLLGYSFEVVYKPGLESKAADALSRKPLDVQFCGISALVLIDLKIIKE
        MAVVL VQ WRPYLL TRFIVKTDQKSLKFLLEQRVVQ QYQKWVAKLLGYSFEVVYKPGL++KAADALSRKP D+QFCGI+A VL+DLKII+E
Subjt:  MAVVLVVQRWRPYLLETRFIVKTDQKSLKFLLEQRVVQLQYQKWVAKLLGYSFEVVYKPGLESKAADALSRKPLDVQFCGISALVLIDLKIIKE
SwissProt top hitse value%identityAlignment
P20825 Retrovirus-related Pol polyprotein from transposon 2975.8e-0432.39Show/hide
Query:  MAVVLVVQRWRPYLLETRFIVKTDQKSLKFLLEQRVVQLQYQKWVAKLLGYSFEVVYKPGLESKAADALSR
        +A+V   + +R YLL  +F++ +D + L++L   +    + ++W  +L  Y F++ Y  G E+  ADALSR
Subjt:  MAVVLVVQRWRPYLLETRFIVKTDQKSLKFLLEQRVVQLQYQKWVAKLLGYSFEVVYKPGLESKAADALSR
Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus5.8e-0436.49Show/hide
Query:  MAVVLVVQRWRPYLLETRFI-VKTDQKSLKFLLEQRVVQLQYQKWVAKLLGYSFEVVYKPGLESKAADALSRKP
        +A++  +   R YL     I V TD + L F L  R    + ++W A++  Y+ E++YKPG  +  ADALSR P
Subjt:  MAVVLVVQRWRPYLLETRFI-VKTDQKSLKFLLEQRVVQLQYQKWVAKLLGYSFEVVYKPGLESKAADALSRKP
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGTGGTTTTGGTTGTACAGCGCTGGCGTCCTTATCTATTGGAAACAAGATTTATTGTTAAAACAGACCAGAAGTCACTTAAGTTTTTATTGGAACAACGGGTAGT
CCAATTGCAATATCAGAAATGGGTAGCCAAATTACTTGGATATTCATTTGAAGTGGTTTATAAACCAGGCCTTGAAAGCAAAGCAGCTGATGCTTTGTCTAGAAAACCGT
TGGATGTACAGTTTTGTGGAATCTCTGCACTAGTTTTAATTGATTTAAAAATTATCAAGGAAGGGTGGAGGAGGATGAGAAACTTCAGAAAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTGTGGTTTTGGTTGTACAGCGCTGGCGTCCTTATCTATTGGAAACAAGATTTATTGTTAAAACAGACCAGAAGTCACTTAAGTTTTTATTGGAACAACGGGTAGT
CCAATTGCAATATCAGAAATGGGTAGCCAAATTACTTGGATATTCATTTGAAGTGGTTTATAAACCAGGCCTTGAAAGCAAAGCAGCTGATGCTTTGTCTAGAAAACCGT
TGGATGTACAGTTTTGTGGAATCTCTGCACTAGTTTTAATTGATTTAAAAATTATCAAGGAAGGGTGGAGGAGGATGAGAAACTTCAGAAAGTAG
Protein sequenceShow/hide protein sequence
MAVVLVVQRWRPYLLETRFIVKTDQKSLKFLLEQRVVQLQYQKWVAKLLGYSFEVVYKPGLESKAADALSRKPLDVQFCGISALVLIDLKIIKEGWRRMRNFRK