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IVF0015749 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0015749
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGag/pol protein
Genome locationchr12:10483739..10484089
RNA-Seq ExpressionIVF0015749
SyntenyIVF0015749
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0110165 - cellular anatomical structure (cellular component)
GO:0016787 - hydrolase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061317.1 hypothetical protein E6C27_scaffold6213G00130 [Cucumis melo var. makuwa]8.55e-2359.78Show/hide
Query:  MSQTQFSRPGITSGPTTVSSLCFILVISLSIFGTHTLRTSTHTHGMLPDTFSKGIGRTASSLDRELRCYPKRSKKWPMLRTSGVRSSGVSNH
        M +TQFSR      P        +LVISLSIF   TLRTSTHT GMLP  F++GIGR ASSL+ EL   PKR K+WPML TSG R SGV NH
Subjt:  MSQTQFSRPGITSGPTTVSSLCFILVISLSIFGTHTLRTSTHTHGMLPDTFSKGIGRTASSLDRELRCYPKRSKKWPMLRTSGVRSSGVSNH

KAA0062888.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa]1.96e-3064.08Show/hide
Query:  SGVRTKKICAGMSQTQFSRPGITSGPTTVSSLCFILVISLSIFGTHTLRTSTHTHGMLPDTFSKGIGRTASSLDRELRCYPKRSKKWPMLRTSGVRSSGV
        SG   KK  A M ++QFSR G  S   TVSSLCF+LVI+LSIF   T RTSTHT GMLPD FS+GIG+ ASSL+ EL C PKRSK+W ML TS  RSSG+
Subjt:  SGVRTKKICAGMSQTQFSRPGITSGPTTVSSLCFILVISLSIFGTHTLRTSTHTHGMLPDTFSKGIGRTASSLDRELRCYPKRSKKWPMLRTSGVRSSGV

Query:  SNH
         NH
Subjt:  SNH

TYK15439.1 uncharacterized protein E5676_scaffold477G00010 [Cucumis melo var. makuwa]1.01e-2667.07Show/hide
Query:  ITSGPTTVSSLCFILVISLSIFGTHTLRTSTHTHGMLPDTFSKGIGRTASSLDRELRCYPKRSKKWPMLRTSGVRSSGVSNH
        + SGP TVSS+C +LVI LSIFG    RTSTHT GMLPD FS GI R A SL+ EL C PKRS++WPML TSG RSS V NH
Subjt:  ITSGPTTVSSLCFILVISLSIFGTHTLRTSTHTHGMLPDTFSKGIGRTASSLDRELRCYPKRSKKWPMLRTSGVRSSGVSNH

TYK22521.1 uncharacterized protein E5676_scaffold387G00220 [Cucumis melo var. makuwa]4.83e-2647.13Show/hide
Query:  SGVRTKKICAGMSQTQFSRPGITSGPTTVSSLCFILVISLSIFG-------THTL---------------------------------------------
        SG R KK  A M QTQFSRPG  S P TVS+LC +LV SLSIFG       THT                                              
Subjt:  SGVRTKKICAGMSQTQFSRPGITSGPTTVSSLCFILVISLSIFG-------THTL---------------------------------------------

Query:  --RTSTHTHGMLPDTFSKGIGRTASSLDRELRCYPKRSKKWPMLRTSGVRSSGVSNH
          RTSTHT GMLPDTFS GIGR ASSL+ EL C PK SK+WPML T G RSSG  NH
Subjt:  --RTSTHTHGMLPDTFSKGIGRTASSLDRELRCYPKRSKKWPMLRTSGVRSSGVSNH

TYK23424.1 gag/pol protein [Cucumis melo var. makuwa]4.64e-2557.02Show/hide
Query:  LQQRKRAELGVSGVRTKKICAGMSQTQFSRPGITSGPTTVSSLCFILVISLSIFGTHTLRTSTHTHGMLPDTFSKGIGRTASSLDRELRCYPKRSKKWPM
        L +R R     SGVR KK+ +  S          +   TVSSL F+LVISL IFG HT RTSTHT  MLPD FS+GIGR ASSL+ ELRC PK  K+WPM
Subjt:  LQQRKRAELGVSGVRTKKICAGMSQTQFSRPGITSGPTTVSSLCFILVISLSIFGTHTLRTSTHTHGMLPDTFSKGIGRTASSLDRELRCYPKRSKKWPM

Query:  LRTSGVRSSGVSNH
        L+TSG  SSGV N+
Subjt:  LRTSGVRSSGVSNH

TrEMBL top hitse value%identityAlignment
A0A5A7V5J2 Non-LTR retroelement reverse transcriptase-like protein4.0e-2564.08Show/hide
Query:  SGVRTKKICAGMSQTQFSRPGITSGPTTVSSLCFILVISLSIFGTHTLRTSTHTHGMLPDTFSKGIGRTASSLDRELRCYPKRSKKWPMLRTSGVRSSGV
        SG   KK  A M ++QFSR G  S   TVSSLCF+LVI+LSIF   T RTSTHT GMLPD FS+GIG+ ASSL+ EL C PKRSK+W ML TS  RSSG+
Subjt:  SGVRTKKICAGMSQTQFSRPGITSGPTTVSSLCFILVISLSIFGTHTLRTSTHTHGMLPDTFSKGIGRTASSLDRELRCYPKRSKKWPMLRTSGVRSSGV

Query:  SNH
         NH
Subjt:  SNH

A0A5D3CUK8 Gag/pol protein1.8e-1749.51Show/hide
Query:  MHLQQRKRAELGVSGVRTKKICAGMSQTQFSRPGITSGPTTVSSLCFILVISLSIFGTHTLRTSTHTHGMLPDTFSKGIGRTASSLDRELRCYPKRSKKW
        +H  +     L  S  R +K+ A M  TQF   G+ + PTTVS  C +LVI  S FGTHT RTS +  G++P  F + I R ASSL+ ELRC+PKRSK+W
Subjt:  MHLQQRKRAELGVSGVRTKKICAGMSQTQFSRPGITSGPTTVSSLCFILVISLSIFGTHTLRTSTHTHGMLPDTFSKGIGRTASSLDRELRCYPKRSKKW

Query:  PML
        PML
Subjt:  PML

A0A5D3CZ27 ULP_PROTEASE domain-containing protein5.1e-2067.07Show/hide
Query:  ITSGPTTVSSLCFILVISLSIFGTHTLRTSTHTHGMLPDTFSKGIGRTASSLDRELRCYPKRSKKWPMLRTSGVRSSGVSNH
        + SGP TVSS+C +LVI LSIFG    RTSTHT GMLPD FS GI R A SL+ EL C PKRS++WPML TSG RSS V NH
Subjt:  ITSGPTTVSSLCFILVISLSIFGTHTLRTSTHTHGMLPDTFSKGIGRTASSLDRELRCYPKRSKKWPMLRTSGVRSSGVSNH

A0A5D3DFP2 Uncharacterized protein2.7e-2147.13Show/hide
Query:  SGVRTKKICAGMSQTQFSRPGITSGPTTVSSLCFILVISLSIFG-------TH-----------------------------------------------
        SG R KK  A M QTQFSRPG  S P TVS+LC +LV SLSIFG       TH                                               
Subjt:  SGVRTKKICAGMSQTQFSRPGITSGPTTVSSLCFILVISLSIFG-------TH-----------------------------------------------

Query:  TLRTSTHTHGMLPDTFSKGIGRTASSLDRELRCYPKRSKKWPMLRTSGVRSSGVSNH
        T RTSTHT GMLPDTFS GIGR ASSL+ EL C PK SK+WPML T G RSSG  NH
Subjt:  TLRTSTHTHGMLPDTFSKGIGRTASSLDRELRCYPKRSKKWPMLRTSGVRSSGVSNH

A0A5D3DIF8 Gag/pol protein1.8e-2057.02Show/hide
Query:  LQQRKRAELGVSGVRTKKICAGMSQTQFSRPGITSGPTTVSSLCFILVISLSIFGTHTLRTSTHTHGMLPDTFSKGIGRTASSLDRELRCYPKRSKKWPM
        L +R R     SGVR KK+ +  S          +   TVSSL F+LVISL IFG HT RTSTHT  MLPD FS+GIGR ASSL+ ELRC PK  K+WPM
Subjt:  LQQRKRAELGVSGVRTKKICAGMSQTQFSRPGITSGPTTVSSLCFILVISLSIFGTHTLRTSTHTHGMLPDTFSKGIGRTASSLDRELRCYPKRSKKWPM

Query:  LRTSGVRSSGVSNH
        L+TSG  SSGV N+
Subjt:  LRTSGVRSSGVSNH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCACTTGCAGCAAAGGAAACGGGCTGAGCTTGGGGTCTCTGGTGTTCGTACCAAGAAAATATGTGCGGGAATGTCCCAGACTCAATTTTCTCGTCCTGGGATAACAAG
CGGTCCCACGACGGTTTCTTCCCTTTGCTTCATATTGGTCATAAGTCTTTCGATTTTCGGGACTCATACTCTGAGGACTTCAACCCACACTCATGGCATGCTCCCTGACA
CGTTTTCCAAAGGTATAGGTCGGACAGCGAGCTCTTTGGATAGAGAACTAAGGTGTTATCCAAAACGGTCCAAAAAGTGGCCAATGCTTCGAACGAGTGGTGTACGCTCA
TCTGGTGTCAGTAACCACTAG
mRNA sequenceShow/hide mRNA sequence
ATGCACTTGCAGCAAAGGAAACGGGCTGAGCTTGGGGTCTCTGGTGTTCGTACCAAGAAAATATGTGCGGGAATGTCCCAGACTCAATTTTCTCGTCCTGGGATAACAAG
CGGTCCCACGACGGTTTCTTCCCTTTGCTTCATATTGGTCATAAGTCTTTCGATTTTCGGGACTCATACTCTGAGGACTTCAACCCACACTCATGGCATGCTCCCTGACA
CGTTTTCCAAAGGTATAGGTCGGACAGCGAGCTCTTTGGATAGAGAACTAAGGTGTTATCCAAAACGGTCCAAAAAGTGGCCAATGCTTCGAACGAGTGGTGTACGCTCA
TCTGGTGTCAGTAACCACTAG
Protein sequenceShow/hide protein sequence
MHLQQRKRAELGVSGVRTKKICAGMSQTQFSRPGITSGPTTVSSLCFILVISLSIFGTHTLRTSTHTHGMLPDTFSKGIGRTASSLDRELRCYPKRSKKWPMLRTSGVRS
SGVSNH