CuGenDBv2

Gene ID	IVF0015857
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Photosystem II protein D1
Genome location	chr02:3379857..3380042
RNA-Seq Expression	IVF0015857
Synteny	IVF0015857
Gene Ontology terms	GO:0009772 - photosynthetic electron transport in photosystem II (biological process) GO:0018298 - protein-chromophore linkage (biological process) GO:0009507 - chloroplast (cellular component) GO:0009523 - photosystem II (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0042170 - plastid membrane (cellular component) GO:0010242 - oxygen evolving activity (molecular function) GO:0016168 - chlorophyll binding (molecular function) GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (molecular function) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR000484 - Photosynthetic reaction centre, L/M IPR036854 - Photosystem II protein D1/D2 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

AHI88473.1 PsbA [Prunus armeniaca]

8.27e-33

91.8

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Query:  MAFNLNGFNFNQFVVDSQGRVIDTWADIINGANLGMKVMHERNAHNFPLNLAAVEVPSING
        MAFNLNGFNFNQ VVDSQGRVI+TWADIIN ANLGM+VMHERNAHNFPL+LAAVEVPSING
Subjt:  MAFNLNGFNFNQFVVDSQGRVIDTWADIINGANLGMKVMHERNAHNFPLNLAAVEVPSING

AKG25976.1 PsbA, partial [Dioscorea pentaphylla]

9.45e-33

91.8

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Query:  MAFNLNGFNFNQFVVDSQGRVIDTWADIINGANLGMKVMHERNAHNFPLNLAAVEVPSING
        MAFNLNGFNFNQ VVDSQGRVI+TWADIIN ANLGM+VMHERNAHNFPL+LAAVEVPSING
Subjt:  MAFNLNGFNFNQFVVDSQGRVIDTWADIINGANLGMKVMHERNAHNFPLNLAAVEVPSING

AKG25977.1 PsbA, partial [Dioscorea pentaphylla]

1.34e-32

90.16

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Query:  MAFNLNGFNFNQFVVDSQGRVIDTWADIINGANLGMKVMHERNAHNFPLNLAAVEVPSING
        MAFNLNGFNFNQ VVDSQGRVI+TWADIIN ANLGM+VMHERNAHNFPL+LAA+EVPSING
Subjt:  MAFNLNGFNFNQFVVDSQGRVIDTWADIINGANLGMKVMHERNAHNFPLNLAAVEVPSING

QYL02803.1 PsbA [Prunus armeniaca]

2.37e-32

91.8

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Query:  MAFNLNGFNFNQFVVDSQGRVIDTWADIINGANLGMKVMHERNAHNFPLNLAAVEVPSING
        MAFNLNGFNFNQ VVDSQGRVI+TWADIIN ANLGM VMHERNAHNFPL+LAAVEVPSING
Subjt:  MAFNLNGFNFNQFVVDSQGRVIDTWADIINGANLGMKVMHERNAHNFPLNLAAVEVPSING

RHN69458.1 Photosystem II protein D1 [Medicago truncatula]

8.27e-33

91.8

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Query:  MAFNLNGFNFNQFVVDSQGRVIDTWADIINGANLGMKVMHERNAHNFPLNLAAVEVPSING
        MAFNLNGFNFNQ VVDSQGRVI+TWADIIN ANLGMKVMHERNAHNFPL+LAAVE PSING
Subjt:  MAFNLNGFNFNQFVVDSQGRVIDTWADIINGANLGMKVMHERNAHNFPLNLAAVEVPSING

TrEMBL top hits

e value

%identity

Alignment

A0A1V0IN99 Photosystem II protein D1

1.2e-23

91.8

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Query:  MAFNLNGFNFNQFVVDSQGRVIDTWADIINGANLGMKVMHERNAHNFPLNLAAVEVPSING
        MAFNLNGFNFNQ VVDSQGRVI+TWADIIN ANLGM+VMHERNAHNFPL+LAAVEVPSING
Subjt:  MAFNLNGFNFNQFVVDSQGRVIDTWADIINGANLGMKVMHERNAHNFPLNLAAVEVPSING

A0A3B6QDB2 Uncharacterized protein

1.8e-24

91.8

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Query:  MAFNLNGFNFNQFVVDSQGRVIDTWADIINGANLGMKVMHERNAHNFPLNLAAVEVPSING
        MAFNLNGFNFNQFVVDSQGRVI+TWADIIN ANLGM+VMHERNAHNFPL+LAA+EVPSING
Subjt:  MAFNLNGFNFNQFVVDSQGRVIDTWADIINGANLGMKVMHERNAHNFPLNLAAVEVPSING

A0A453N533 Uncharacterized protein

1.4e-24

93.44

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Query:  MAFNLNGFNFNQFVVDSQGRVIDTWADIINGANLGMKVMHERNAHNFPLNLAAVEVPSING
        MAFNLNGFNFNQFVVDSQGRVI+TWADIIN ANLGM+VMHERNAHNFPL+LAAVEVPSING
Subjt:  MAFNLNGFNFNQFVVDSQGRVIDTWADIINGANLGMKVMHERNAHNFPLNLAAVEVPSING

A0A453N617 Uncharacterized protein

1.4e-24

93.44

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Query:  MAFNLNGFNFNQFVVDSQGRVIDTWADIINGANLGMKVMHERNAHNFPLNLAAVEVPSING
        MAFNLNGFNFNQFVVDSQGRVI+TWADIIN ANLGM+VMHERNAHNFPL+LAAVEVPSING
Subjt:  MAFNLNGFNFNQFVVDSQGRVIDTWADIINGANLGMKVMHERNAHNFPLNLAAVEVPSING

Q4FFM2 Photosystem II protein D1 (Fragment)

1.2e-23

91.8

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Query:  MAFNLNGFNFNQFVVDSQGRVIDTWADIINGANLGMKVMHERNAHNFPLNLAAVEVPSING
        MAFNLNGFNFNQ VVDSQGRVI+TWADIIN ANLGM+VMHERNAHNFPL+LAAVEVPSING
Subjt:  MAFNLNGFNFNQFVVDSQGRVIDTWADIINGANLGMKVMHERNAHNFPLNLAAVEVPSING

SwissProt top hits

e value

%identity

Alignment

A1E9Y8 Photosystem II protein D1

7.0e-26

90.16

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Query:  MAFNLNGFNFNQFVVDSQGRVIDTWADIINGANLGMKVMHERNAHNFPLNLAAVEVPSING
        MAFNLNGFNFNQ VVDSQGRVI+TWADIIN ANLGM+VMHERNAHNFPL+LAA+EVPSING
Subjt:  MAFNLNGFNFNQFVVDSQGRVIDTWADIINGANLGMKVMHERNAHNFPLNLAAVEVPSING

P05337 Photosystem II protein D1

7.0e-26

90.16

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Query:  MAFNLNGFNFNQFVVDSQGRVIDTWADIINGANLGMKVMHERNAHNFPLNLAAVEVPSING
        MAFNLNGFNFNQ VVDSQGRVI+TWADIIN ANLGM+VMHERNAHNFPL+LAAVEVP+ING
Subjt:  MAFNLNGFNFNQFVVDSQGRVIDTWADIINGANLGMKVMHERNAHNFPLNLAAVEVPSING

P10510 Photosystem II protein D1

3.2e-26

91.8

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Query:  MAFNLNGFNFNQFVVDSQGRVIDTWADIINGANLGMKVMHERNAHNFPLNLAAVEVPSING
        MAFNLNGFNFNQ VVDSQGRVI+TWADIIN ANLGM+VMHERNAHNFPL+LAAVEVPSING
Subjt:  MAFNLNGFNFNQFVVDSQGRVIDTWADIINGANLGMKVMHERNAHNFPLNLAAVEVPSING

P12463 Photosystem II protein D1

3.2e-26

91.8

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Query:  MAFNLNGFNFNQFVVDSQGRVIDTWADIINGANLGMKVMHERNAHNFPLNLAAVEVPSING
        MAFNLNGFNFNQ VVDSQGRVI+TWADIIN ANLGM+VMHERNAHNFPL+LAAVEVPSING
Subjt:  MAFNLNGFNFNQFVVDSQGRVIDTWADIINGANLGMKVMHERNAHNFPLNLAAVEVPSING

Q2QDA8 Photosystem II protein D1

3.2e-26

91.8

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Query:  MAFNLNGFNFNQFVVDSQGRVIDTWADIINGANLGMKVMHERNAHNFPLNLAAVEVPSING
        MAFNLNGFNFNQ VVDSQGRVI+TWADIIN ANLGM+VMHERNAHNFPL+LAAVEVPSING
Subjt:  MAFNLNGFNFNQFVVDSQGRVIDTWADIINGANLGMKVMHERNAHNFPLNLAAVEVPSING

Arabidopsis top hits

e value

%identity

Alignment

ATCG00020.1 photosystem II reaction center protein A

2.5e-26

88.52

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Query:  MAFNLNGFNFNQFVVDSQGRVIDTWADIINGANLGMKVMHERNAHNFPLNLAAVEVPSING
        MAFNLNGFNFNQ VVDSQGRVI+TWADIIN ANLGM+VMHERNAHNFPL+LAAVE PS NG
Subjt:  MAFNLNGFNFNQFVVDSQGRVIDTWADIINGANLGMKVMHERNAHNFPLNLAAVEVPSING

Sequences

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CDS sequence

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ATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATTTGTAGTTGATAGTCAAGGTCGTGTAATTGATACCTGGGCTGATATTATTAACGGTGCTAATCTTGGTATGAA
AGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAAACCTAGCTGCGGTTGAAGTTCCATCTATCAATGGATAA

mRNA sequence

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ATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATTTGTAGTTGATAGTCAAGGTCGTGTAATTGATACCTGGGCTGATATTATTAACGGTGCTAATCTTGGTATGAA
AGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAAACCTAGCTGCGGTTGAAGTTCCATCTATCAATGGATAA

Protein sequence

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MAFNLNGFNFNQFVVDSQGRVIDTWADIINGANLGMKVMHERNAHNFPLNLAAVEVPSING

IVF0015857 (gene) of Melon (IVF77) v1 genome