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IVF0015933 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0015933
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr11:7268977..7269477
RNA-Seq ExpressionIVF0015933
SyntenyIVF0015933
Gene Ontology termsGO:0006281 - DNA repair (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003677 - DNA binding (molecular function)
GO:0004519 - endonuclease activity (molecular function)
InterPro domainsIPR020847 - AP endonuclease 1, binding site
IPR036691 - Endonuclease/exonuclease/phosphatase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038339.1 uncharacterized protein E6C27_scaffold270G002130 [Cucumis melo var. makuwa]7.83e-2036.14Show/hide
Query:  GLKDPTKRIALKKSIKNHHPDVVIIQESKMENFDALFTKSIWSSKEIGWEFVESISASGAF-SKCGMSKITVVEITKGRFSAQL----TVIRYAKDAGGF
        G++   KR+A ++ +K H+P+VV+IQESK E FD  F KS+WS ++IGW FVES   SG   +   MS + VVE  K     Q+     + R+A +    
Subjt:  GLKDPTKRIALKKSIKNHHPDVVIIQESKMENFDALFTKSIWSSKEIGWEFVESISASGAF-SKCGMSKITVVEITKGRFSAQL----TVIRYAKDAGGF

Query:  AMYTAHVVTCLVRALIHFRCGIAEISTLLTGLIGRNTRGMRLFNNFIDSANIMELPLQNGRYTWSR
                         F CG             R T+ +R FNN I  A + E+ L NGR+TWSR
Subjt:  AMYTAHVVTCLVRALIHFRCGIAEISTLLTGLIGRNTRGMRLFNNFIDSANIMELPLQNGRYTWSR

KAA0066335.1 uncharacterized protein E6C27_scaffold21G003960 [Cucumis melo var. makuwa]2.97e-11298.8Show/hide
Query:  MEYKGLKDPTKRIALKKSIKNHHPDVVIIQESKMENFDALFTKSIWSSKEIGWEFVESISASGAFSKCGMSKITVVEITKGRFSAQLTVIRYAKDAGGFA
        MEYKGLKDPTKRIALKKSIKNHHPDVVIIQESKMENFDALFTKSIWSSKEIGWEFVESISASGAFSKCGMSKITVVEITKGRFSAQLTVIRYAKDAGGFA
Subjt:  MEYKGLKDPTKRIALKKSIKNHHPDVVIIQESKMENFDALFTKSIWSSKEIGWEFVESISASGAFSKCGMSKITVVEITKGRFSAQLTVIRYAKDAGGFA

Query:  MYTAHVVTCLVRALIHFRCGIAEISTLLTGLIGRNTRGMRLFNNFIDSANIMELPLQNGRYTWSRP
        MYTAHVVTCLVRALIHFRCGIAEISTLLTGLIGRNTRGMRLFNNFIDSANIMELPLQNGRYTW  P
Subjt:  MYTAHVVTCLVRALIHFRCGIAEISTLLTGLIGRNTRGMRLFNNFIDSANIMELPLQNGRYTWSRP

TYJ97056.1 uncharacterized protein E5676_scaffold506G001240 [Cucumis melo var. makuwa]2.12e-1935.54Show/hide
Query:  GLKDPTKRIALKKSIKNHHPDVVIIQESKMENFDALFTKSIWSSKEIGWEFVESISASGAF-SKCGMSKITVVEITKGRFSAQL----TVIRYAKDAGGF
        G++   KR+A ++ +K H+P+VV+IQESK E FD  F KS+WS +++GW FVES   SG   +   MS + VVE  K     Q+     + R+A +    
Subjt:  GLKDPTKRIALKKSIKNHHPDVVIIQESKMENFDALFTKSIWSSKEIGWEFVESISASGAF-SKCGMSKITVVEITKGRFSAQL----TVIRYAKDAGGF

Query:  AMYTAHVVTCLVRALIHFRCGIAEISTLLTGLIGRNTRGMRLFNNFIDSANIMELPLQNGRYTWSR
                         F CG             R T+ +R FNN I  A + E+ L NGR+TWSR
Subjt:  AMYTAHVVTCLVRALIHFRCGIAEISTLLTGLIGRNTRGMRLFNNFIDSANIMELPLQNGRYTWSR

TYK03825.1 exodeoxyribonuclease-like [Cucumis melo var. makuwa]6.81e-2137.14Show/hide
Query:  MEYKGLKDPTKRIALKKSIKNHHPDVVIIQESKMENFDALFTKSIWSSKEIGWEFVESISASGAFSKCGMSKITV----------VEITKGRFSAQLTVI
        +E+KGLK   K  + ++ +KN +PDVV+IQESKM++FD +F KS+WSS++IGWE +E   +SGA S C    I+           V+ T+ +   + T  
Subjt:  MEYKGLKDPTKRIALKKSIKNHHPDVVIIQESKMENFDALFTKSIWSSKEIGWEFVESISASGAFSKCGMSKITV----------VEITKGRFSAQLTVI

Query:  RYAKDAGGFAMYTAHVVTCLVRALIHFRCGIAEISTLLTGLIGRNTRGMRLFNNFIDSANIMELPLQNGRYTWSR
        R + D               +    H R             +GR+TRGM LFN  I+S  +ME+P+ NGRYTW R
Subjt:  RYAKDAGGFAMYTAHVVTCLVRALIHFRCGIAEISTLLTGLIGRNTRGMRLFNNFIDSANIMELPLQNGRYTWSR

TYK31266.1 hypothetical protein E5676_scaffold455G005560 [Cucumis melo var. makuwa]1.18e-1843.65Show/hide
Query:  FTKSIWSSKEIGWEFVESI-SASGAFSKCGMSKITVVEITKGRFSAQLTVIRYAKDAGGFAMYTAHVVTCLVRALIHFRCGIAEISTLLTGLIGRNTRGM
        F KS+WSSK+IGW+FV S+ S  G  +    SKI+V E+ K RFS  +  +   K  G   +Y AH           F              IGR+TRGM
Subjt:  FTKSIWSSKEIGWEFVESI-SASGAFSKCGMSKITVVEITKGRFSAQLTVIRYAKDAGGFAMYTAHVVTCLVRALIHFRCGIAEISTLLTGLIGRNTRGM

Query:  RLFNNFIDSANIMELPLQNGRYTWSR
         LFN FIDS  +ME+PLQNGR+ WSR
Subjt:  RLFNNFIDSANIMELPLQNGRYTWSR

TrEMBL top hitse value%identityAlignment
A0A5A7TAF5 Uncharacterized protein4.9e-1634.94Show/hide
Query:  GLKDPTKRIALKKSIKNHHPDVVIIQESKMENFDALFTKSIWSSKEIGWEFVESISASGA-FSKCGMSKITVVE----ITKGRFSAQLTVIRYAKDAGGF
        G++   KR+A ++ +K H+P+VV+IQESK E FD  F KS+WS ++IGW FVES   SG   +   MS + VVE    + + +      + R+A +    
Subjt:  GLKDPTKRIALKKSIKNHHPDVVIIQESKMENFDALFTKSIWSSKEIGWEFVESISASGA-FSKCGMSKITVVE----ITKGRFSAQLTVIRYAKDAGGF

Query:  AMYTAHVVTCLVRALIHFRCGIAEISTLLTGLIGRNTRGMRLFNNFIDSANIMELPLQNGRYTWSR
                         F C             GR T+ +R FNN I  A + E+ L NGR+TWSR
Subjt:  AMYTAHVVTCLVRALIHFRCGIAEISTLLTGLIGRNTRGMRLFNNFIDSANIMELPLQNGRYTWSR

A0A5A7VKQ0 Uncharacterized protein1.2e-8698.8Show/hide
Query:  MEYKGLKDPTKRIALKKSIKNHHPDVVIIQESKMENFDALFTKSIWSSKEIGWEFVESISASGAFSKCGMSKITVVEITKGRFSAQLTVIRYAKDAGGFA
        MEYKGLKDPTKRIALKKSIKNHHPDVVIIQESKMENFDALFTKSIWSSKEIGWEFVESISASGAFSKCGMSKITVVEITKGRFSAQLTVIRYAKDAGGFA
Subjt:  MEYKGLKDPTKRIALKKSIKNHHPDVVIIQESKMENFDALFTKSIWSSKEIGWEFVESISASGAFSKCGMSKITVVEITKGRFSAQLTVIRYAKDAGGFA

Query:  MYTAHVVTCLVRALIHFRCGIAEISTLLTGLIGRNTRGMRLFNNFIDSANIMELPLQNGRYTWSRP
        MYTAHVVTCLVRALIHFRCGIAEISTLLTGLIGRNTRGMRLFNNFIDSANIMELPLQNGRYTW  P
Subjt:  MYTAHVVTCLVRALIHFRCGIAEISTLLTGLIGRNTRGMRLFNNFIDSANIMELPLQNGRYTWSRP

A0A5D3BDI9 Uncharacterized protein1.1e-1534.34Show/hide
Query:  GLKDPTKRIALKKSIKNHHPDVVIIQESKMENFDALFTKSIWSSKEIGWEFVESISASGA-FSKCGMSKITVVE----ITKGRFSAQLTVIRYAKDAGGF
        G++   KR+A ++ +K H+P+VV+IQESK E FD  F KS+WS +++GW FVES   SG   +   MS + VVE    + + +      + R+A +    
Subjt:  GLKDPTKRIALKKSIKNHHPDVVIIQESKMENFDALFTKSIWSSKEIGWEFVESISASGA-FSKCGMSKITVVE----ITKGRFSAQLTVIRYAKDAGGF

Query:  AMYTAHVVTCLVRALIHFRCGIAEISTLLTGLIGRNTRGMRLFNNFIDSANIMELPLQNGRYTWSR
                         F C             GR T+ +R FNN I  A + E+ L NGR+TWSR
Subjt:  AMYTAHVVTCLVRALIHFRCGIAEISTLLTGLIGRNTRGMRLFNNFIDSANIMELPLQNGRYTWSR

A0A5D3BXH7 Exodeoxyribonuclease-like1.5e-1737.14Show/hide
Query:  MEYKGLKDPTKRIALKKSIKNHHPDVVIIQESKMENFDALFTKSIWSSKEIGWEFVESISASGAFSKCGMSKIT----------VVEITKGRFSAQLTVI
        +E+KGLK   K  + ++ +KN +PDVV+IQESKM++FD +F KS+WSS++IGWE +E   +SGA S C    I+           V+ T+ +   + T  
Subjt:  MEYKGLKDPTKRIALKKSIKNHHPDVVIIQESKMENFDALFTKSIWSSKEIGWEFVESISASGAFSKCGMSKIT----------VVEITKGRFSAQLTVI

Query:  RYAKDAGGFAMYTAHVVTCLVRALIHFRCGIAEISTLLTGLIGRNTRGMRLFNNFIDSANIMELPLQNGRYTWSR
        R + D               +    H R             +GR+TRGM LFN  I+S  +ME+P+ NGRYTW R
Subjt:  RYAKDAGGFAMYTAHVVTCLVRALIHFRCGIAEISTLLTGLIGRNTRGMRLFNNFIDSANIMELPLQNGRYTWSR

A0A5D3E6J9 Reverse transcriptase domain-containing protein1.9e-1542.86Show/hide
Query:  FTKSIWSSKEIGWEFVESI-SASGAFSKCGMSKITVVEITKGRFSAQLTVIRYAKDAGGFAMYTAHVVTCLVRALIHFRCGIAEISTLLTGLIGRNTRGM
        F KS+WSSK+IGW+FV S+ S  G  +    SKI+V E+ K RFS  +  +   K   G  +Y AH                          IGR+TRGM
Subjt:  FTKSIWSSKEIGWEFVESI-SASGAFSKCGMSKITVVEITKGRFSAQLTVIRYAKDAGGFAMYTAHVVTCLVRALIHFRCGIAEISTLLTGLIGRNTRGM

Query:  RLFNNFIDSANIMELPLQNGRYTWSR
         LFN FIDS  +ME+PLQNGR+ WSR
Subjt:  RLFNNFIDSANIMELPLQNGRYTWSR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAATACAAGGGGCTGAAAGATCCTACCAAGCGCATAGCACTTAAGAAATCCATCAAGAACCATCATCCGGATGTGGTTATAATTCAAGAATCAAAAATGGAAAACTT
TGATGCATTATTTACTAAATCAATATGGAGTTCCAAAGAAATCGGATGGGAGTTTGTGGAATCAATTAGTGCATCGGGGGCATTCTCAAAATGTGGGATGAGCAAAATTA
CTGTGGTTGAGATTACCAAAGGGAGGTTTTCTGCCCAATTAACGGTGATACGGTATGCAAAAGACGCTGGTGGATTCGCAATGTATACGGCCCATGTGGTTACTTGTTTG
GTCAGAGCTCTTATCCATTTTAGATGCGGTATTGCGGAGATTTCAACGTTACTCACTGGGCTCATTGGCAGAAACACAAGAGGAATGAGGCTATTTAATAACTTCATTGA
TTCAGCTAATATCATGGAACTTCCTCTTCAAAATGGCAGATACACATGGTCAAGACCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAATACAAGGGGCTGAAAGATCCTACCAAGCGCATAGCACTTAAGAAATCCATCAAGAACCATCATCCGGATGTGGTTATAATTCAAGAATCAAAAATGGAAAACTT
TGATGCATTATTTACTAAATCAATATGGAGTTCCAAAGAAATCGGATGGGAGTTTGTGGAATCAATTAGTGCATCGGGGGCATTCTCAAAATGTGGGATGAGCAAAATTA
CTGTGGTTGAGATTACCAAAGGGAGGTTTTCTGCCCAATTAACGGTGATACGGTATGCAAAAGACGCTGGTGGATTCGCAATGTATACGGCCCATGTGGTTACTTGTTTG
GTCAGAGCTCTTATCCATTTTAGATGCGGTATTGCGGAGATTTCAACGTTACTCACTGGGCTCATTGGCAGAAACACAAGAGGAATGAGGCTATTTAATAACTTCATTGA
TTCAGCTAATATCATGGAACTTCCTCTTCAAAATGGCAGATACACATGGTCAAGACCTTGA
Protein sequenceShow/hide protein sequence
MEYKGLKDPTKRIALKKSIKNHHPDVVIIQESKMENFDALFTKSIWSSKEIGWEFVESISASGAFSKCGMSKITVVEITKGRFSAQLTVIRYAKDAGGFAMYTAHVVTCL
VRALIHFRCGIAEISTLLTGLIGRNTRGMRLFNNFIDSANIMELPLQNGRYTWSRP