CuGenDBv2

Gene ID	IVF0015943
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	chr11:10977628..10977987
RNA-Seq Expression	IVF0015943
Synteny	IVF0015943
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function) GO:0016772 - transferase activity, transferring phosphorus-containing groups (molecular function)
InterPro domains	IPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0050719.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]

8.28e-48

72.88

Show/hide

Query:  MDVTTTFLYRDLEGVMYMAEPKGYEVKGKEDI-----------------WYIRFDTFILKQGFHKNSYDACVYWKLSQKGTHIYLLLYIDDMILMSKDYS
        MDVTT FL+ +LE V+YMA+PKGYEVKGKED+                 WYIRFDTFILKQGFH+NSYDACVYWK SQKGT+IYLLLY+DDMIL+SKDY+
Subjt:  MDVTTTFLYRDLEGVMYMAEPKGYEVKGKEDI-----------------WYIRFDTFILKQGFHKNSYDACVYWKLSQKGTHIYLLLYIDDMILMSKDYS

Query:  EIYELKKQLSNEFEMKDL
        EI ELKKQLSNEFEMKDL
Subjt:  EIYELKKQLSNEFEMKDL

KAA0059168.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

2.18e-50

72.88

Show/hide

Query:  MDVTTTFLYRDLEGVMYMAEPKGYEVKGKEDI-----------------WYIRFDTFILKQGFHKNSYDACVYWKLSQKGTHIYLLLYIDDMILMSKDYS
        MDVTTTFL+R+LE V+YMA+PKGYEVKGKED+                 WYIRFDTFILK  FHK SYDACVYWKL QKGT+IYLLLY+DDMIL+SKDY+
Subjt:  MDVTTTFLYRDLEGVMYMAEPKGYEVKGKEDI-----------------WYIRFDTFILKQGFHKNSYDACVYWKLSQKGTHIYLLLYIDDMILMSKDYS

Query:  EIYELKKQLSNEFEMKDL
        EI ELKKQLSNEFEMKDL
Subjt:  EIYELKKQLSNEFEMKDL

KAA0067243.1 retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa]

6.90e-49

74.58

Show/hide

Query:  MDVTTTFLYRDLEGVMYMAEPKGYEVKGKEDI-----------------WYIRFDTFILKQGFHKNSYDACVYWKLSQKGTHIYLLLYIDDMILMSKDYS
        MDVTTTFL+ +LE V+YMA+PKGYEVKGKED+                 WYIRFDTFILKQGFH+NSYDACVYWKLSQKGT+IYLLLY+DDMIL+SKDY 
Subjt:  MDVTTTFLYRDLEGVMYMAEPKGYEVKGKEDI-----------------WYIRFDTFILKQGFHKNSYDACVYWKLSQKGTHIYLLLYIDDMILMSKDYS

Query:  EIYELKKQLSNEFEMKDL
        EI ELKKQLSNEFEMKDL
Subjt:  EIYELKKQLSNEFEMKDL

TYK13826.1 putative polyprotein [Cucumis melo var. makuwa]

8.22e-48

72.88

Show/hide

Query:  MDVTTTFLYRDLEGVMYMAEPKGYEVKGKEDI-----------------WYIRFDTFILKQGFHKNSYDACVYWKLSQKGTHIYLLLYIDDMILMSKDYS
        MDVTT FL+ +LE V+YMA+PKGYEVKGKED+                 WYIRFDTFILKQGFH+NSYDACVYWK SQKGT+IYLLLY+DDMIL+SKDY+
Subjt:  MDVTTTFLYRDLEGVMYMAEPKGYEVKGKEDI-----------------WYIRFDTFILKQGFHKNSYDACVYWKLSQKGTHIYLLLYIDDMILMSKDYS

Query:  EIYELKKQLSNEFEMKDL
        EI ELKKQLSNEFEMKDL
Subjt:  EIYELKKQLSNEFEMKDL

TYK25306.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]

8.29e-48

72.88

Show/hide

Query:  MDVTTTFLYRDLEGVMYMAEPKGYEVKGKEDI-----------------WYIRFDTFILKQGFHKNSYDACVYWKLSQKGTHIYLLLYIDDMILMSKDYS
        MDVTT FL+ +LE V+YMA+PKGYEVKGKED+                 WYIRFDTFILKQGFH+NSYDACVYWK SQKGT+IYLLLY+DDMIL+SKDY+
Subjt:  MDVTTTFLYRDLEGVMYMAEPKGYEVKGKEDI-----------------WYIRFDTFILKQGFHKNSYDACVYWKLSQKGTHIYLLLYIDDMILMSKDYS

Query:  EIYELKKQLSNEFEMKDL
        EI ELKKQLSNEFEMKDL
Subjt:  EIYELKKQLSNEFEMKDL

TrEMBL top hits

e value

%identity

Alignment

A0A5A7UB25 Putative gag-pol polyprotein

3.9e-40

72.88

Show/hide

Query:  MDVTTTFLYRDLEGVMYMAEPKGYEVKGKEDI-----------------WYIRFDTFILKQGFHKNSYDACVYWKLSQKGTHIYLLLYIDDMILMSKDYS
        MDVTT FL+ +LE V+YMA+PKGYEVKGKED+                 WYIRFDTFILKQGFH+NSYDACVYWK SQKGT+IYLLLY+DDMIL+SKDY+
Subjt:  MDVTTTFLYRDLEGVMYMAEPKGYEVKGKEDI-----------------WYIRFDTFILKQGFHKNSYDACVYWKLSQKGTHIYLLLYIDDMILMSKDYS

Query:  EIYELKKQLSNEFEMKDL
        EI ELKKQLSNEFEMKDL
Subjt:  EIYELKKQLSNEFEMKDL

A0A5A7VGM4 Retrotransposon protein, putative, Ty1-copia sub-class

4.6e-41

74.58

Show/hide

Query:  MDVTTTFLYRDLEGVMYMAEPKGYEVKGKEDI-----------------WYIRFDTFILKQGFHKNSYDACVYWKLSQKGTHIYLLLYIDDMILMSKDYS
        MDVTTTFL+ +LE V+YMA+PKGYEVKGKED+                 WYIRFDTFILKQGFH+NSYDACVYWKLSQKGT+IYLLLY+DDMIL+SKDY 
Subjt:  MDVTTTFLYRDLEGVMYMAEPKGYEVKGKEDI-----------------WYIRFDTFILKQGFHKNSYDACVYWKLSQKGTHIYLLLYIDDMILMSKDYS

Query:  EIYELKKQLSNEFEMKDL
        EI ELKKQLSNEFEMKDL
Subjt:  EIYELKKQLSNEFEMKDL

A0A5D3CTV2 Putative polyprotein

3.9e-40

72.88

Show/hide

Query:  MDVTTTFLYRDLEGVMYMAEPKGYEVKGKEDI-----------------WYIRFDTFILKQGFHKNSYDACVYWKLSQKGTHIYLLLYIDDMILMSKDYS
        MDVTT FL+ +LE V+YMA+PKGYEVKGKED+                 WYIRFDTFILKQGFH+NSYDACVYWK SQKGT+IYLLLY+DDMIL+SKDY+
Subjt:  MDVTTTFLYRDLEGVMYMAEPKGYEVKGKEDI-----------------WYIRFDTFILKQGFHKNSYDACVYWKLSQKGTHIYLLLYIDDMILMSKDYS

Query:  EIYELKKQLSNEFEMKDL
        EI ELKKQLSNEFEMKDL
Subjt:  EIYELKKQLSNEFEMKDL

A0A5D3D650 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.9e-39

72.88

Show/hide

Query:  MDVTTTFLYRDLEGVMYMAEPKGYEVKGKEDI-----------------WYIRFDTFILKQGFHKNSYDACVYWKLSQKGTHIYLLLYIDDMILMSKDYS
        MDVTTTFL+R+LE V+YMA+PKGYEVKGKED+                 WYIRFDTFILK  FHK SYDACVYWKL QKGT+IYLLLY+DDMIL+SKDY+
Subjt:  MDVTTTFLYRDLEGVMYMAEPKGYEVKGKEDI-----------------WYIRFDTFILKQGFHKNSYDACVYWKLSQKGTHIYLLLYIDDMILMSKDYS

Query:  EIYELKKQLSNEFEMKDL
        EI ELKKQLSNEFEMKDL
Subjt:  EIYELKKQLSNEFEMKDL

A0A5D3DNU1 Putative gag-pol polyprotein

3.9e-40

72.88

Show/hide

Query:  MDVTTTFLYRDLEGVMYMAEPKGYEVKGKEDI-----------------WYIRFDTFILKQGFHKNSYDACVYWKLSQKGTHIYLLLYIDDMILMSKDYS
        MDVTT FL+ +LE V+YMA+PKGYEVKGKED+                 WYIRFDTFILKQGFH+NSYDACVYWK SQKGT+IYLLLY+DDMIL+SKDY+
Subjt:  MDVTTTFLYRDLEGVMYMAEPKGYEVKGKEDI-----------------WYIRFDTFILKQGFHKNSYDACVYWKLSQKGTHIYLLLYIDDMILMSKDYS

Query:  EIYELKKQLSNEFEMKDL
        EI ELKKQLSNEFEMKDL
Subjt:  EIYELKKQLSNEFEMKDL

SwissProt top hits

e value

%identity

Alignment

P04146 Copia protein

7.2e-07

Show/hide

Query:  MDVTTTFLYRDLEGVMYMAEPKG---------------YEVKGKEDIWYIRFDTFILKQGFHKNSYDACVYWKLSQKGT---HIYLLLYIDDMILMSKDY
        MDV T FL   L+  +YM  P+G               Y +K     W+  F+  + +  F  +S D C+Y  +  KG    +IY+LLY+DD+++ + D 
Subjt:  MDVTTTFLYRDLEGVMYMAEPKG---------------YEVKGKEDIWYIRFDTFILKQGFHKNSYDACVYWKLSQKGT---HIYLLLYIDDMILMSKDY

Query:  SEIYELKKQLSNEFEMKDLS
        + +   K+ L  +F M DL+
Subjt:  SEIYELKKQLSNEFEMKDLS

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

5.3e-18

40.68

Show/hide

Query:  MDVTTTFLYRDLEGVMYMAEPKGYEVKGKEDI-----------------WYIRFDTFILKQGFHKNSYDACVYWKLSQKGTHIYLLLYIDDMILMSKDYS
        +DV T FL+ DLE  +YM +P+G+EV GK+ +                 WY++FD+F+  Q + K   D CVY+K   +   I LLLY+DDM+++ KD  
Subjt:  MDVTTTFLYRDLEGVMYMAEPKGYEVKGKEDI-----------------WYIRFDTFILKQGFHKNSYDACVYWKLSQKGTHIYLLLYIDDMILMSKDYS

Query:  EIYELKKQLSNEFEMKDL
         I +LK  LS  F+MKDL
Subjt:  EIYELKKQLSNEFEMKDL

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1

6.7e-05

26.27

Show/hide

Query:  MDVTTTFLYRDLEGVMYMAEPKG-----------------YEVKGKEDIWYIRFDTFILKQGFHKNSYDACVYWKLSQKGTHI-YLLLYIDDMILMSKDY
        +DV   FL   L   +YM++P G                 Y +K     WY+    ++L  GF  +  D  ++  + Q+G  I Y+L+Y+DD+++   D 
Subjt:  MDVTTTFLYRDLEGVMYMAEPKG-----------------YEVKGKEDIWYIRFDTFILKQGFHKNSYDACVYWKLSQKGTHI-YLLLYIDDMILMSKDY

Query:  SEIYELKKQLSNEFEMKD
        + ++     LS  F +KD
Subjt:  SEIYELKKQLSNEFEMKD

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2

6.7e-05

25.64

Show/hide

Query:  MDVTTTFLYRDLEGVMYMAEPKGYEVKGKED-----------------IWYIRFDTFILKQGFHKNSYDACVYWKLSQKGTHIYLLLYIDDMILMSKDYS
        +DV   FL   L   +YM++P G+  K + D                  WY+   T++L  GF  +  D  ++  L +  + IY+L+Y+DD+++   D  
Subjt:  MDVTTTFLYRDLEGVMYMAEPKGYEVKGKED-----------------IWYIRFDTFILKQGFHKNSYDACVYWKLSQKGTHIYLLLYIDDMILMSKDYS

Query:  EIYELKKQLSNEFEMKD
         +      LS  F +K+
Subjt:  EIYELKKQLSNEFEMKD

Arabidopsis top hits

e value

%identity

Alignment

AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8

7.4e-07

24.59

Show/hide

Query:  MDVTTTFLYRDLEGVMYMAEPKGYEVKGKEDI---------------------WYIRFDTFILKQGFHKNSYDACVYWKLSQKGTHIYLLLYIDDMILMS
        +D++  FL  DL+  +YM  P GY  +  + +                     W+++F   ++  GF ++  D   + K++     + +L+Y+DD+I+ S
Subjt:  MDVTTTFLYRDLEGVMYMAEPKGYEVKGKEDI---------------------WYIRFDTFILKQGFHKNSYDACVYWKLSQKGTHIYLLLYIDDMILMS

Query:  KDYSEIYELKKQLSNEFEMKDL
         + + + ELK QL + F+++DL
Subjt:  KDYSEIYELKKQLSNEFEMKDL

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGATGTCACCACAACATTCCTTTATAGAGATCTTGAGGGAGTGATGTACATGGCTGAACCTAAGGGATATGAGGTGAAGGGTAAGGAAGACATATGGTATATCAGGTT
TGATACTTTCATTCTAAAGCAAGGATTTCACAAGAACTCATATGATGCTTGTGTTTACTGGAAACTATCTCAGAAAGGTACGCACATCTATCTACTGTTATATATAGACG
ATATGATACTAATGTCTAAGGATTATTCTGAAATCTATGAACTCAAGAAACAATTGAGTAATGAATTTGAAATGAAAGATTTAAGTTAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MDVTTTFLYRDLEGVMYMAEPKGYEVKGKEDIWYIRFDTFILKQGFHKNSYDACVYWKLSQKGTHIYLLLYIDDMILMSKDYSEIYELKKQLSNEFEMKDLS

IVF0015943 (gene) of Melon (IVF77) v1 genome