; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0015944 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0015944
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr04:15606748..15607031
RNA-Seq ExpressionIVF0015944
SyntenyIVF0015944
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043029.1 retrotransposon protein [Cucumis melo var. makuwa]2.53e-0571.43Show/hide
Query:  KMRGPTCSDFGWNDEKKCLITE-DMFDN
        +MRGPTCS FGWNDE+KC+I E ++FDN
Subjt:  KMRGPTCSDFGWNDEKKCLITE-DMFDN
KAA0047166.1 retrotransposon protein [Cucumis melo var. makuwa]3.21e-0571.43Show/hide
Query:  KMRGPTCSDFGWNDEKKCLITE-DMFDN
        +MRGPTCS FGWNDE+KC+I E ++FDN
Subjt:  KMRGPTCSDFGWNDEKKCLITE-DMFDN
KAA0059919.1 retrotransposon protein [Cucumis melo var. makuwa]8.22e-0671.43Show/hide
Query:  KMRGPTCSDFGWNDEKKCLITE-DMFDN
        ++RGPTCSDFGWNDE+KC+I E ++FDN
Subjt:  KMRGPTCSDFGWNDEKKCLITE-DMFDN
KAA0061118.1 hypothetical protein E6C27_scaffold348G00340 [Cucumis melo var. makuwa]6.80e-2764.77Show/hide
Query:  MDEGRGDMPRRLDHHGRLA----------------NVGRENARIQIDIHHCDRKHNQITEINISGHCK--------MRGPTCSDFGWN
        MDEGRGDMPRRLDHHGRLA                NVGRENARIQIDIHHCDRKHNQITEINISGHCK        +R  T +D G N
Subjt:  MDEGRGDMPRRLDHHGRLA----------------NVGRENARIQIDIHHCDRKHNQITEINISGHCK--------MRGPTCSDFGWN
TYK18691.1 retrotransposon protein [Cucumis melo var. makuwa]1.92e-0855.81Show/hide
Query:  RKHNQITEINISGHCKMRGPTCSDFGWNDEKKCLITE-DMFDN
        +K N+I E ++SGHC+  G T SDFGWNDE KC+I + D+FD+
Subjt:  RKHNQITEINISGHCKMRGPTCSDFGWNDEKKCLITE-DMFDN
TrEMBL top hitse value%identityAlignment
A0A5D3C0B1 Uncharacterized protein4.5e-2064.77Show/hide
Query:  MDEGRGDMPRRLDHHGRLA----------------NVGRENARIQIDIHHCDRKHNQITEINISGHCK--------MRGPTCSDFGWN
        MDEGRGDMPRRLDHHGRLA                NVGRENARIQIDIHHCDRKHNQITEINISGHCK        +R  T +D G N
Subjt:  MDEGRGDMPRRLDHHGRLA----------------NVGRENARIQIDIHHCDRKHNQITEINISGHCK--------MRGPTCSDFGWN
A0A5D3D568 Retrotransposon protein5.3e-0555.81Show/hide
Query:  RKHNQITEINISGHCKMRGPTCSDFGWNDEKKCLIT-EDMFDN
        +K N+I E ++SGHC+  G T SDFGWNDE KC+I  +D+FD+
Subjt:  RKHNQITEINISGHCKMRGPTCSDFGWNDEKKCLIT-EDMFDN
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACGAAGGCAGAGGAGACATGCCTCGTCGACTTGATCATCATGGGAGGTTGGCAAATGTTGGGAGAGAGAATGCCAGGATACAGATTGACATCCACCACTGTGATCG
AAAGCATAATCAAATTACTGAAATAAACATTTCAGGCCATTGCAAAATGAGGGGACCGACGTGCAGTGACTTTGGATGGAACGATGAGAAGAAGTGCTTGATTACGGAGG
ACATGTTTGACAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGACGAAGGCAGAGGAGACATGCCTCGTCGACTTGATCATCATGGGAGGTTGGCAAATGTTGGGAGAGAGAATGCCAGGATACAGATTGACATCCACCACTGTGATCG
AAAGCATAATCAAATTACTGAAATAAACATTTCAGGCCATTGCAAAATGAGGGGACCGACGTGCAGTGACTTTGGATGGAACGATGAGAAGAAGTGCTTGATTACGGAGG
ACATGTTTGACAATTGA
Protein sequenceShow/hide protein sequence
MDEGRGDMPRRLDHHGRLANVGRENARIQIDIHHCDRKHNQITEINISGHCKMRGPTCSDFGWNDEKKCLITEDMFDN