; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0015958 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0015958
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Descriptioncold shock domain-containing protein 3
Genome locationtig00001378:161131..162407
RNA-Seq ExpressionIVF0015958
SyntenyIVF0015958
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR002059 - Cold-shock protein, DNA-binding
IPR011129 - Cold shock domain
IPR012340 - Nucleic acid-binding, OB-fold
IPR019844 - Cold-shock (CSD) domain
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6596667.1 Cold shock protein 1, partial [Cucurbita argyrosperma subsp. sororia]2.48e-16092.25Show/hide
Query:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGGGGGRGGRGGGG
        MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIA GDDGKSKAIEVVALDGSSGNRRDNFGGGGG    RGGRGGGG
Subjt:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGGGGGRGGRGGGG

Query:  GGGYGFGGWRGGDRRNGNSGGGGGGCYQCGEQGHLARDCTRPSNRSGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGSGGGACYNCGGFGHLARDC
           YGFGGWRGGDRRNG+SG GGGGCYQCGEQGHLARDC R SNR GGGGG GGGCFTCGEVGHLARDCPRGNSGGGGG G+GGG CYNCGGFGHLARDC
Subjt:  GGGYGFGGWRGGDRRNGNSGGGGGGCYQCGEQGHLARDCTRPSNRSGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGSGGGACYNCGGFGHLARDC

Query:  NRGGAGGGSGGGGGGGCFNCGEYGHIARDCQNESRGSGGGGGRFGGGGGGGSNTCFNCGKSGHFARECPDA
        NRGGAGGGSGGGGGGGCFNCGEYGH+ARDCQNESR SGGGG RFGGGGGGG+NTCFNCGKSGHFARECPDA
Subjt:  NRGGAGGGSGGGGGGGCFNCGEYGHIARDCQNESRGSGGGGGRFGGGGGGGSNTCFNCGKSGHFARECPDA

XP_004146143.1 cold shock domain-containing protein 3 [Cucumis sativus]6.26e-16896.03Show/hide
Query:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGGGGGRGGRGGGG
        MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGG   RGGRGGGG
Subjt:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGGGGGRGGRGGGG

Query:  GGGYGFGGWRGGDRRNGNSGGGGGGCYQCGEQGHLARDCTRPSNRSGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGSGGG-ACYNCGGFGHLARD
        GGGYGFGGWRGGDRRNGNSG GGGGCYQCGEQGHLARDCTRPSNR GGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGG GGG ACYNCGGFGHLARD
Subjt:  GGGYGFGGWRGGDRRNGNSGGGGGGCYQCGEQGHLARDCTRPSNRSGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGSGGG-ACYNCGGFGHLARD

Query:  CNRGGAGGGSGGGGGGG-CFNCGEYGHIARDCQNESRGSGGGGG-RFGGGGGGG--SNTCFNCGKSGHFARECPDAS
        CNRGGAGGGSGGGGGGG CFNCGEYGHIARDCQNESRGSGGGGG RFGGGGGGG  SNTCFNCGKSGHFARECPDAS
Subjt:  CNRGGAGGGSGGGGGGG-CFNCGEYGHIARDCQNESRGSGGGGG-RFGGGGGGG--SNTCFNCGKSGHFARECPDAS

XP_008448549.1 PREDICTED: cold shock domain-containing protein 3 [Cucumis melo]2.01e-182100Show/hide
Query:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGGGGGRGGRGGGG
        MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGGGGGRGGRGGGG
Subjt:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGGGGGRGGRGGGG

Query:  GGGYGFGGWRGGDRRNGNSGGGGGGCYQCGEQGHLARDCTRPSNRSGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGSGGGACYNCGGFGHLARDC
        GGGYGFGGWRGGDRRNGNSGGGGGGCYQCGEQGHLARDCTRPSNRSGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGSGGGACYNCGGFGHLARDC
Subjt:  GGGYGFGGWRGGDRRNGNSGGGGGGCYQCGEQGHLARDCTRPSNRSGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGSGGGACYNCGGFGHLARDC

Query:  NRGGAGGGSGGGGGGGCFNCGEYGHIARDCQNESRGSGGGGGRFGGGGGGGSNTCFNCGKSGHFARECPDAS
        NRGGAGGGSGGGGGGGCFNCGEYGHIARDCQNESRGSGGGGGRFGGGGGGGSNTCFNCGKSGHFARECPDAS
Subjt:  NRGGAGGGSGGGGGGGCFNCGEYGHIARDCQNESRGSGGGGGRFGGGGGGGSNTCFNCGKSGHFARECPDAS

XP_022923189.1 cold shock domain-containing protein 3-like [Cucurbita moschata]7.36e-16092.96Show/hide
Query:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGGGGGRGGRGGGG
        MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGG    RGGRGGGG
Subjt:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGGGGGRGGRGGGG

Query:  GGGYGFGGWRGGDRRNGNSGGGGGGCYQCGEQGHLARDCTRPSNRSGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGSGGGACYNCGGFGHLARDC
        GG YGFGGWRGGDRRNG+SG GGGGCYQCGEQGHLARDCTR SNR  GGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGG+GGGACYNCGGFGHLARDC
Subjt:  GGGYGFGGWRGGDRRNGNSGGGGGGCYQCGEQGHLARDCTRPSNRSGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGSGGGACYNCGGFGHLARDC

Query:  NRGGAGGGSGGGGGGGCFNCGEYGHIARDCQNESRGSGGGGGRFGGGGGGGSNTCFNCGKSGHFARECPD
        NRGGAGGGSGG GGGGCFNCGEYGH+ARDCQNESRGSGGG  RFGGGG   +NTCFNCGKSGHFARECPD
Subjt:  NRGGAGGGSGGGGGGGCFNCGEYGHIARDCQNESRGSGGGGGRFGGGGGGGSNTCFNCGKSGHFARECPD

XP_038876618.1 cold shock domain-containing protein 3 [Benincasa hispida]1.22e-16494.18Show/hide
Query:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGGGGGRGGRGGGG
        MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGG    RGGRGGGG
Subjt:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGGGGGRGGRGGGG

Query:  GGGYGFGGWRGGDRRNGNSGGGGGGCYQCGEQGHLARDCTRPSNRSGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGSGG-GACYNCGGFGHLARD
        GGGYGFGGWRGGDRRNGNSG GGG CYQCGEQGHLARDCTR SNRSGGGGGGGG CFTCGEVGHLARDCPRGNSGGGGGGG GG GACYNCGGFGHLARD
Subjt:  GGGYGFGGWRGGDRRNGNSGGGGGGCYQCGEQGHLARDCTRPSNRSGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGSGG-GACYNCGGFGHLARD

Query:  CNRGGAGGGSGGGGGGGCFNCGEYGHIARDCQNESRGSGGGGGRFGGGG---GGGSNTCFNCGKSGHFARECPDA
        CNRGGAGGGSG  GGGGCFNCGEYGHIARDCQNESRGSGGGGGRFGGGG   GGG NTCFNCGKSGHFARECPDA
Subjt:  CNRGGAGGGSGGGGGGGCFNCGEYGHIARDCQNESRGSGGGGGRFGGGG---GGGSNTCFNCGKSGHFARECPDA

TrEMBL top hitse value%identityAlignment
A0A0A0L4X7 Uncharacterized protein1.2e-13196.03Show/hide
Query:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGGGGGRGGRGGGG
        MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNF   GGGGGGRGGRGGGG
Subjt:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGGGGGRGGRGGGG

Query:  GGGYGFGGWRGGDRRNGNSGGGGGGCYQCGEQGHLARDCTRPSNRSGGGGGGGGGCFTCGEVGHLARDCPRGNS-GGGGGGGSGGGACYNCGGFGHLARD
        GGGYGFGGWRGGDRRNGNSG GGGGCYQCGEQGHLARDCTRPSNR GGGGGGGGGCFTCGEVGHLARDCPRGNS GGGGGGG GGGACYNCGGFGHLARD
Subjt:  GGGYGFGGWRGGDRRNGNSGGGGGGCYQCGEQGHLARDCTRPSNRSGGGGGGGGGCFTCGEVGHLARDCPRGNS-GGGGGGGSGGGACYNCGGFGHLARD

Query:  CNRGGAGGGS-GGGGGGGCFNCGEYGHIARDCQNESRGS-GGGGGRF--GGGGGGGSNTCFNCGKSGHFARECPDAS
        CNRGGAGGGS GGGGGGGCFNCGEYGHIARDCQNESRGS GGGGGRF  GGGGGGGSNTCFNCGKSGHFARECPDAS
Subjt:  CNRGGAGGGS-GGGGGGGCFNCGEYGHIARDCQNESRGS-GGGGGRF--GGGGGGGSNTCFNCGKSGHFARECPDAS

A0A1S3BKK1 cold shock domain-containing protein 38.6e-143100Show/hide
Query:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGGGGGRGGRGGGG
        MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGGGGGRGGRGGGG
Subjt:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGGGGGRGGRGGGG

Query:  GGGYGFGGWRGGDRRNGNSGGGGGGCYQCGEQGHLARDCTRPSNRSGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGSGGGACYNCGGFGHLARDC
        GGGYGFGGWRGGDRRNGNSGGGGGGCYQCGEQGHLARDCTRPSNRSGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGSGGGACYNCGGFGHLARDC
Subjt:  GGGYGFGGWRGGDRRNGNSGGGGGGCYQCGEQGHLARDCTRPSNRSGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGSGGGACYNCGGFGHLARDC

Query:  NRGGAGGGSGGGGGGGCFNCGEYGHIARDCQNESRGSGGGGGRFGGGGGGGSNTCFNCGKSGHFARECPDAS
        NRGGAGGGSGGGGGGGCFNCGEYGHIARDCQNESRGSGGGGGRFGGGGGGGSNTCFNCGKSGHFARECPDAS
Subjt:  NRGGAGGGSGGGGGGGCFNCGEYGHIARDCQNESRGSGGGGGRFGGGGGGGSNTCFNCGKSGHFARECPDAS

A0A5D3CJR2 Cold shock domain-containing protein 38.6e-143100Show/hide
Query:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGGGGGRGGRGGGG
        MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGGGGGRGGRGGGG
Subjt:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGGGGGRGGRGGGG

Query:  GGGYGFGGWRGGDRRNGNSGGGGGGCYQCGEQGHLARDCTRPSNRSGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGSGGGACYNCGGFGHLARDC
        GGGYGFGGWRGGDRRNGNSGGGGGGCYQCGEQGHLARDCTRPSNRSGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGSGGGACYNCGGFGHLARDC
Subjt:  GGGYGFGGWRGGDRRNGNSGGGGGGCYQCGEQGHLARDCTRPSNRSGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGSGGGACYNCGGFGHLARDC

Query:  NRGGAGGGSGGGGGGGCFNCGEYGHIARDCQNESRGSGGGGGRFGGGGGGGSNTCFNCGKSGHFARECPDAS
        NRGGAGGGSGGGGGGGCFNCGEYGHIARDCQNESRGSGGGGGRFGGGGGGGSNTCFNCGKSGHFARECPDAS
Subjt:  NRGGAGGGSGGGGGGGCFNCGEYGHIARDCQNESRGSGGGGGRFGGGGGGGSNTCFNCGKSGHFARECPDAS

A0A6J1E5N5 cold shock domain-containing protein 3-like4.7e-12592.96Show/hide
Query:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGGGGGRGGRGGGG
        MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNF    GGGGGRGGR GGG
Subjt:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGGGGGRGGRGGGG

Query:  GGGYGFGGWRGGDRRNGNSGGGGGGCYQCGEQGHLARDCTRPSNRSGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGSGGGACYNCGGFGHLARDC
        GGGYGFGGWRGGDRRNG+SG GGGGCYQCGEQGHLARDCTR SNR  GGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGG+GGGACYNCGGFGHLARDC
Subjt:  GGGYGFGGWRGGDRRNGNSGGGGGGCYQCGEQGHLARDCTRPSNRSGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGSGGGACYNCGGFGHLARDC

Query:  NRGGAGGGSGGGGGGGCFNCGEYGHIARDCQNESRGSGGGGGRFGGGGGGGSNTCFNCGKSGHFARECPD
        NRGGAGGGS GGGGGGCFNCGEYGH+ARDCQNESRGS  GGGRF   GGGG+NTCFNCGKSGHFARECPD
Subjt:  NRGGAGGGSGGGGGGGCFNCGEYGHIARDCQNESRGSGGGGGRFGGGGGGGSNTCFNCGKSGHFARECPD

E5RDD6 Cold-shock DNA-binding family protein8.6e-143100Show/hide
Query:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGGGGGRGGRGGGG
        MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGGGGGRGGRGGGG
Subjt:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGGGGGRGGRGGGG

Query:  GGGYGFGGWRGGDRRNGNSGGGGGGCYQCGEQGHLARDCTRPSNRSGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGSGGGACYNCGGFGHLARDC
        GGGYGFGGWRGGDRRNGNSGGGGGGCYQCGEQGHLARDCTRPSNRSGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGSGGGACYNCGGFGHLARDC
Subjt:  GGGYGFGGWRGGDRRNGNSGGGGGGCYQCGEQGHLARDCTRPSNRSGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGSGGGACYNCGGFGHLARDC

Query:  NRGGAGGGSGGGGGGGCFNCGEYGHIARDCQNESRGSGGGGGRFGGGGGGGSNTCFNCGKSGHFARECPDAS
        NRGGAGGGSGGGGGGGCFNCGEYGHIARDCQNESRGSGGGGGRFGGGGGGGSNTCFNCGKSGHFARECPDAS
Subjt:  NRGGAGGGSGGGGGGGCFNCGEYGHIARDCQNESRGSGGGGGRFGGGGGGGSNTCFNCGKSGHFARECPDAS

SwissProt top hitse value%identityAlignment
O65639 Cold shock protein 14.7e-4550.87Show/hide
Query:  RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGG--GGGGRG----GRGG
        R TG V WFN SKG+GFI PD    +LFVHQSSI S+GYRSL VGD VEF I  G DGK+KA+ V A  G S  + +N  G G   GGGG G    G  G
Subjt:  RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGG--GGGGRG----GRGG

Query:  GGGGGYGFGGWRGGDRRNGNSGGGGGGCYQCGEQGHLARDCTRPSN--RSGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGS---GGGACYNCGGF
              G GG  GG  R      GG GCY CG+ GH ARDCT   N  + G   GG  GC+TCG+VGH+ARDC + + G G   G+   G   CY CG  
Subjt:  GGGGGYGFGGWRGGDRRNGNSGGGGGGCYQCGEQGHLARDCTRPSN--RSGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGS---GGGACYNCGGF

Query:  GHLARDCNRGGAGGG--SGGGGGGGCFNCGEYGHIARDC---QNESRG--SGGGGGRF-------GGGGGGGSNTCFNCGKSGHFAREC
        GH ARDC +  A G   SGGGG G C++CG  GHIARDC   +  SRG    GG G         G GGGG  N C+ CGK GHFAREC
Subjt:  GHLARDCNRGGAGGG--SGGGGGGGCFNCGEYGHIARDC---QNESRG--SGGGGGRF-------GGGGGGGSNTCFNCGKSGHFAREC

P27484 Glycine-rich protein 28.8e-3650.55Show/hide
Query:  MAEE---RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSS--GNRRDNFGGGGGGGGGRGG
        MAEE   R  G V+WF+D KGFGFI PD  G DLFVHQS I+S+G+RSL  G+ VEF++  G DG++KA++V   DG++  G R     GGGGGGGGRGG
Subjt:  MAEE---RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSS--GNRRDNFGGGGGGGGGRGG

Query:  RG-GGGGGGYGFGGWRGGDRRNGNSGGGGGGCYQCGEQGHLARDCTRPSNRSGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGSGGGACYNCGGFG
         G GGG GGYG GG RGG R     GGG GG                      GGGGG GG                G+  GGGGGG GGG         
Subjt:  RG-GGGGGGYGFGGWRGGDRRNGNSGGGGGGCYQCGEQGHLARDCTRPSNRSGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGSGGGACYNCGGFG

Query:  HLARDCNRGGAGGGSGGGGGGGCFNCGEYGHIARDCQNESRGSGGGGGRF-GGGGGGGSNTCFNCGKSGHFAREC
                GG GGG G GGG GCF CGE GH ARDC     G GGGGGRF GGGGGGG   C+ CG+ GHFAREC
Subjt:  HLARDCNRGGAGGGSGGGGGGGCFNCGEYGHIARDCQNESRGSGGGGGRF-GGGGGGGSNTCFNCGKSGHFAREC

Q38896 Cold shock domain-containing protein 43.2e-3050Show/hide
Query:  ERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGS--SGNRRDNFGGGGGGGGGRGGRGGGG-
        +R  G V+WF+  KGFGFI P   G DLFVHQSSI+S+G+RSL   + VEF +   + G+ KAIEV   DG+   GN      GGGG  GGRGG GGGG 
Subjt:  ERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGS--SGNRRDNFGGGGGGGGGRGGRGGGG-

Query:  -GGGYGFGGWRGGDRRNGNSGGGGGG----CYQCGEQGHLARDCTRPSNRSGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGSGGGACYNCGGFGH
         GGG G G + GG    G+ G GGGG    C++CGE GH+AR+C++      GGGGGG                 R  SGGGGGGG GG +CY+CG  GH
Subjt:  -GGGYGFGGWRGGDRRNGNSGGGGGG----CYQCGEQGHLARDCTRPSNRSGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGSGGGACYNCGGFGH

Query:  LARDCNRGGA
         ARDC  GGA
Subjt:  LARDCNRGGA

Q41188 Cold shock protein 23.8e-3148.94Show/hide
Query:  ERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGS--SGNRRDNFGGGGGGGGGRGGRGGGGG
        ER  G V+WF+  KGFGFI PD  G DLFVHQSSI+S+G+RSL   + VEF++   ++ + KAI+V   DG+   GN       GGG  GGRGG GGG G
Subjt:  ERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGS--SGNRRDNFGGGGGGGGGRGGRGGGGG

Query:  GGYGFGGWRGGDRRNGNSGGGGGGCYQCGEQGHLARDCTRPSNRSGGGGGGGGGCFTCGEVGHLARDCPRGNSG-GGGGGGSGGGACYNCGGFGHLARDC
        GG G GG  GG       GGG GG                     GGGG GG  C+ CGE GH+ARDC  G  G GGGGGG GGG  Y  GG G+     
Subjt:  GGYGFGGWRGGDRRNGNSGGGGGGCYQCGEQGHLARDCTRPSNRSGGGGGGGGGCFTCGEVGHLARDCPRGNSG-GGGGGGSGGGACYNCGGFGHLARDC

Query:  NRGGAGGGSGGGGGGGCFNCGEYGHIARDCQNESR
           G GG  GGGGGG C++CGE GH ARDC +  R
Subjt:  NRGGAGGGSGGGGGGGCFNCGEYGHIARDCQNESR

Q94C69 Cold shock domain-containing protein 32.5e-5453.38Show/hide
Query:  RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGGGGGRGGRGG------
        R  G V WF+D KG+GFI PD  G +LFVHQSSI SDG+RSL +G+ VE++IA G DGK+KAIEV A  G S N+++N   G GG     G  G      
Subjt:  RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGGGGGRGGRGG------

Query:  -GGGGGYGFGGWRGGDRRNGNSGGGGGGCYQCGEQGHLARDCTRP-SNRSGGGGGGGGGCFTCGEVGHLARDCPRGNS----GGGGGGGSGGGACYNCGG
         GG GG  FGG  GG RR+    GG G CY CG+ GH ARDC +     SGGGGGGG  C++CGEVGHLA+DC  G+     GGGGG GSGG  CY CGG
Subjt:  -GGGGGYGFGGWRGGDRRNGNSGGGGGGCYQCGEQGHLARDCTRP-SNRSGGGGGGGGGCFTCGEVGHLARDCPRGNS----GGGGGGGSGGGACYNCGG

Query:  FGHLARDCNRGGAGGGSGGGGGGGCFNCGEYGHIARDCQNESRGSGGGGGR----FGG----------------GGGGGSNTCFNCGKSGHFAREC
         GH ARDC +   GGG+ GGGG  C+ CG  GHIA+ C ++    GGGGGR     GG                GGGGGSN CF CGK GHFAREC
Subjt:  FGHLARDCNRGGAGGGSGGGGGGGCFNCGEYGHIARDCQNESRGSGGGGGR----FGG----------------GGGGGSNTCFNCGKSGHFAREC

Arabidopsis top hitse value%identityAlignment
AT2G17870.1 cold shock domain protein 31.8e-5553.38Show/hide
Query:  RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGGGGGRGGRGG------
        R  G V WF+D KG+GFI PD  G +LFVHQSSI SDG+RSL +G+ VE++IA G DGK+KAIEV A  G S N+++N   G GG     G  G      
Subjt:  RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGGGGGRGGRGG------

Query:  -GGGGGYGFGGWRGGDRRNGNSGGGGGGCYQCGEQGHLARDCTRP-SNRSGGGGGGGGGCFTCGEVGHLARDCPRGNS----GGGGGGGSGGGACYNCGG
         GG GG  FGG  GG RR+    GG G CY CG+ GH ARDC +     SGGGGGGG  C++CGEVGHLA+DC  G+     GGGGG GSGG  CY CGG
Subjt:  -GGGGGYGFGGWRGGDRRNGNSGGGGGGCYQCGEQGHLARDCTRP-SNRSGGGGGGGGGCFTCGEVGHLARDCPRGNS----GGGGGGGSGGGACYNCGG

Query:  FGHLARDCNRGGAGGGSGGGGGGGCFNCGEYGHIARDCQNESRGSGGGGGR----FGG----------------GGGGGSNTCFNCGKSGHFAREC
         GH ARDC +   GGG+ GGGG  C+ CG  GHIA+ C ++    GGGGGR     GG                GGGGGSN CF CGK GHFAREC
Subjt:  FGHLARDCNRGGAGGGSGGGGGGGCFNCGEYGHIARDCQNESRGSGGGGGR----FGG----------------GGGGGSNTCFNCGKSGHFAREC

AT2G21060.1 glycine-rich protein 2B2.3e-3150Show/hide
Query:  ERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGS--SGNRRDNFGGGGGGGGGRGGRGGGG-
        +R  G V+WF+  KGFGFI P   G DLFVHQSSI+S+G+RSL   + VEF +   + G+ KAIEV   DG+   GN      GGGG  GGRGG GGGG 
Subjt:  ERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGS--SGNRRDNFGGGGGGGGGRGGRGGGG-

Query:  -GGGYGFGGWRGGDRRNGNSGGGGGG----CYQCGEQGHLARDCTRPSNRSGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGSGGGACYNCGGFGH
         GGG G G + GG    G+ G GGGG    C++CGE GH+AR+C++      GGGGGG                 R  SGGGGGGG GG +CY+CG  GH
Subjt:  -GGGYGFGGWRGGDRRNGNSGGGGGG----CYQCGEQGHLARDCTRPSNRSGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGSGGGACYNCGGFGH

Query:  LARDCNRGGA
         ARDC  GGA
Subjt:  LARDCNRGGA

AT4G36020.1 cold shock domain protein 13.3e-4650.87Show/hide
Query:  RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGG--GGGGRG----GRGG
        R TG V WFN SKG+GFI PD    +LFVHQSSI S+GYRSL VGD VEF I  G DGK+KA+ V A  G S  + +N  G G   GGGG G    G  G
Subjt:  RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGG--GGGGRG----GRGG

Query:  GGGGGYGFGGWRGGDRRNGNSGGGGGGCYQCGEQGHLARDCTRPSN--RSGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGS---GGGACYNCGGF
              G GG  GG  R      GG GCY CG+ GH ARDCT   N  + G   GG  GC+TCG+VGH+ARDC + + G G   G+   G   CY CG  
Subjt:  GGGGGYGFGGWRGGDRRNGNSGGGGGGCYQCGEQGHLARDCTRPSN--RSGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGS---GGGACYNCGGF

Query:  GHLARDCNRGGAGGG--SGGGGGGGCFNCGEYGHIARDC---QNESRG--SGGGGGRF-------GGGGGGGSNTCFNCGKSGHFAREC
        GH ARDC +  A G   SGGGG G C++CG  GHIARDC   +  SRG    GG G         G GGGG  N C+ CGK GHFAREC
Subjt:  GHLARDCNRGGAGGG--SGGGGGGGCFNCGEYGHIARDC---QNESRG--SGGGGGRF-------GGGGGGGSNTCFNCGKSGHFAREC

AT4G38680.1 glycine rich protein 22.7e-3248.94Show/hide
Query:  ERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGS--SGNRRDNFGGGGGGGGGRGGRGGGGG
        ER  G V+WF+  KGFGFI PD  G DLFVHQSSI+S+G+RSL   + VEF++   ++ + KAI+V   DG+   GN       GGG  GGRGG GGG G
Subjt:  ERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGS--SGNRRDNFGGGGGGGGGRGGRGGGGG

Query:  GGYGFGGWRGGDRRNGNSGGGGGGCYQCGEQGHLARDCTRPSNRSGGGGGGGGGCFTCGEVGHLARDCPRGNSG-GGGGGGSGGGACYNCGGFGHLARDC
        GG G GG  GG       GGG GG                     GGGG GG  C+ CGE GH+ARDC  G  G GGGGGG GGG  Y  GG G+     
Subjt:  GGYGFGGWRGGDRRNGNSGGGGGGCYQCGEQGHLARDCTRPSNRSGGGGGGGGGCFTCGEVGHLARDCPRGNSG-GGGGGGSGGGACYNCGGFGHLARDC

Query:  NRGGAGGGSGGGGGGGCFNCGEYGHIARDCQNESR
           G GG  GGGGGG C++CGE GH ARDC +  R
Subjt:  NRGGAGGGSGGGGGGGCFNCGEYGHIARDCQNESR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGAAGAGAGATTGACTGGTGTTGTTCAGTGGTTTAACGATTCAAAAGGCTTCGGCTTCATCAAGCCAGATGTAGAAGGTCCGGATCTGTTTGTTCATCAATCTTC
TATTAAATCCGATGGTTACCGGAGCCTTGTTGTCGGAGATCATGTCGAGTTTCAGATCGCTCCTGGTGATGATGGAAAATCGAAAGCCATTGAGGTTGTTGCGCTTGATG
GATCTTCGGGAAATCGGAGGGATAACTTTGGTGGTGGTGGTGGTGGTGGTGGTGGAAGGGGTGGCCGTGGTGGAGGTGGCGGTGGAGGTTATGGGTTTGGTGGTTGGAGA
GGAGGTGATAGGCGGAATGGGAACAGTGGAGGTGGTGGGGGTGGGTGTTATCAATGTGGTGAGCAAGGGCATTTAGCTAGAGACTGTACTCGTCCTAGTAACCGCAGCGG
CGGCGGCGGTGGAGGTGGTGGTGGGTGTTTTACTTGCGGTGAAGTTGGTCACTTAGCGAGGGATTGTCCACGAGGGAACAGTGGCGGAGGTGGAGGCGGAGGCAGCGGTG
GTGGGGCTTGCTATAATTGTGGTGGTTTTGGGCATTTGGCTAGGGATTGCAATAGGGGTGGAGCTGGAGGTGGAAGTGGTGGCGGCGGCGGCGGTGGTTGTTTTAATTGT
GGGGAATATGGTCATATAGCCAGAGATTGCCAGAATGAAAGCCGTGGCAGCGGCGGTGGTGGCGGAAGATTTGGTGGCGGCGGTGGCGGTGGCTCAAACACTTGCTTCAA
TTGTGGGAAATCGGGGCATTTTGCTAGGGAGTGTCCTGATGCATCTTGA
mRNA sequenceShow/hide mRNA sequence
AGCGAATTAGGGTTTTTGGAAAGGGGTAGATCTCATTCTCTTTTAAGCTTCTATATATTGGGAAACCCTTTGGATATTGGTTACTCGGTCGCCATTTTTTGCTCACTAAT
TTCTTCTCAAACTTACTTGTGAAGGATGGCGGAAGAGAGATTGACTGGTGTTGTTCAGTGGTTTAACGATTCAAAAGGCTTCGGCTTCATCAAGCCAGATGTAGAAGGTC
CGGATCTGTTTGTTCATCAATCTTCTATTAAATCCGATGGTTACCGGAGCCTTGTTGTCGGAGATCATGTCGAGTTTCAGATCGCTCCTGGTGATGATGGAAAATCGAAA
GCCATTGAGGTTGTTGCGCTTGATGGATCTTCGGGAAATCGGAGGGATAACTTTGGTGGTGGTGGTGGTGGTGGTGGTGGAAGGGGTGGCCGTGGTGGAGGTGGCGGTGG
AGGTTATGGGTTTGGTGGTTGGAGAGGAGGTGATAGGCGGAATGGGAACAGTGGAGGTGGTGGGGGTGGGTGTTATCAATGTGGTGAGCAAGGGCATTTAGCTAGAGACT
GTACTCGTCCTAGTAACCGCAGCGGCGGCGGCGGTGGAGGTGGTGGTGGGTGTTTTACTTGCGGTGAAGTTGGTCACTTAGCGAGGGATTGTCCACGAGGGAACAGTGGC
GGAGGTGGAGGCGGAGGCAGCGGTGGTGGGGCTTGCTATAATTGTGGTGGTTTTGGGCATTTGGCTAGGGATTGCAATAGGGGTGGAGCTGGAGGTGGAAGTGGTGGCGG
CGGCGGCGGTGGTTGTTTTAATTGTGGGGAATATGGTCATATAGCCAGAGATTGCCAGAATGAAAGCCGTGGCAGCGGCGGTGGTGGCGGAAGATTTGGTGGCGGCGGTG
GCGGTGGCTCAAACACTTGCTTCAATTGTGGGAAATCGGGGCATTTTGCTAGGGAGTGTCCTGATGCATCTTGATAAGGAGGGGGAAAGAGTAATAGTATATAATTTTTC
CTTTAACCTCAATATTGTCCTTTAATTATGTTCTTCTTTTGGTGTGGATGGTGGCTATACGTAGCTTTACTTGAGAGGTTTTTATTAATTTTGATACTTTCCATGGTTGT
TTAGCTCTTTAGGGGCAAATTTTTCTGGTTCACACATGATGTGGTAATTCGGTTAAATGAGGCATTTTTATCTTCTGTTCTTGTTTTGTTACATTTTTATATCTCGAGTT
CATGTTGTGCGATGTCTGATTCAATTGTAATTATCCATGTTGATATTTAATAACACATGGAATGCAG
Protein sequenceShow/hide protein sequence
MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGGGGGRGGRGGGGGGGYGFGGWR
GGDRRNGNSGGGGGGCYQCGEQGHLARDCTRPSNRSGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGSGGGACYNCGGFGHLARDCNRGGAGGGSGGGGGGGCFNC
GEYGHIARDCQNESRGSGGGGGRFGGGGGGGSNTCFNCGKSGHFARECPDAS