CuGenDBv2

Gene ID	IVF0015982
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	AAA domain-containing protein
Genome location	chr06:17330732..17337237
RNA-Seq Expression	IVF0015982
Synteny	IVF0015982
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0005737 - cytoplasm (cellular component) GO:0016020 - membrane (cellular component) GO:0003676 - nucleic acid binding (molecular function) GO:0005524 - ATP binding (molecular function) GO:0008237 - metallopeptidase activity (molecular function) GO:0016887 - ATPase activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0044923.1 putative inactive ATP-dependent zinc metalloprotease FTSHI 1 [Cucumis melo var. makuwa]

1.72e-22

33.72

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Query:  HESIVQSDMDDAVDWHRV--RSSG------GQCRRATTEMGVAITSHLLRRYESAKVECCDRISIIPRGQ------------------------------
        HESI QSDMDDA+D   V  R  G      GQCRRATTE+GVAITSHLLRRYESA+VECCDRISIIPRGQ                              
Subjt:  HESIVQSDMDDAVDWHRV--RSSG------GQCRRATTEMGVAITSHLLRRYESAKVECCDRISIIPRGQ------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  -------------------VLIFHEEIIGEEIDFILDNYPPQTPISVLFQEENPGRLP
                           VLI  EEIIGEEIDFILDNYPPQTPIS+L QEENPG LP
Subjt:  -------------------VLIFHEEIIGEEIDFILDNYPPQTPISVLFQEENPGRLP

KAA0060543.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]

1.20e-33

100

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Query:  ERHESIVQSDMDDAVDWHRVRSSGGQCRRATTEMGVAITSHLLRRYESAKVECCDRISIIPRGQV
        ERHESIVQSDMDDAVDWHRVRSSGGQCRRATTEMGVAITSHLLRRYESAKVECCDRISIIPRGQV
Subjt:  ERHESIVQSDMDDAVDWHRVRSSGGQCRRATTEMGVAITSHLLRRYESAKVECCDRISIIPRGQV

TYK00786.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]

1.20e-33

100

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Query:  ERHESIVQSDMDDAVDWHRVRSSGGQCRRATTEMGVAITSHLLRRYESAKVECCDRISIIPRGQV
        ERHESIVQSDMDDAVDWHRVRSSGGQCRRATTEMGVAITSHLLRRYESAKVECCDRISIIPRGQV
Subjt:  ERHESIVQSDMDDAVDWHRVRSSGGQCRRATTEMGVAITSHLLRRYESAKVECCDRISIIPRGQV

XP_016901157.1 PREDICTED: probable inactive ATP-dependent zinc metalloprotease FTSHI 1, chloroplastic, partial [Cucumis melo]

1.70e-22

33.72

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Query:  HESIVQSDMDDAVDWHRV--RSSG------GQCRRATTEMGVAITSHLLRRYESAKVECCDRISIIPRGQ------------------------------
        HESI QSDMDDA+D   V  R  G      GQCRRATTE+GVAITSHLLRRYESA+VECCDRISIIPRGQ                              
Subjt:  HESIVQSDMDDAVDWHRV--RSSG------GQCRRATTEMGVAITSHLLRRYESAKVECCDRISIIPRGQ------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  -------------------VLIFHEEIIGEEIDFILDNYPPQTPISVLFQEENPGRLP
                           VLI  EEIIGEEIDFILDNYPPQTPIS+L QEENPG LP
Subjt:  -------------------VLIFHEEIIGEEIDFILDNYPPQTPISVLFQEENPGRLP

XP_038877975.1 probable inactive ATP-dependent zinc metalloprotease FTSHI 1, chloroplastic [Benincasa hispida]

1.96e-23

34.88

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Query:  HESIVQSDMDDAVDWHRV--RSSG------GQCRRATTEMGVAITSHLLRRYESAKVECCDRISIIPRGQ------------------------------
        HESIVQSDMDDAVD   V  R  G      GQCRRATTEMGVAITSHLLR+YESAKVECCDRISIIPRGQ                              
Subjt:  HESIVQSDMDDAVDWHRV--RSSG------GQCRRATTEMGVAITSHLLRRYESAKVECCDRISIIPRGQ------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  -------------------VLIFHEEIIGEEIDFILDNYPPQTPISVLFQEENPGRLP
                           VLI  EEI GEEIDFILDNYPPQTPISVL QEENPG LP
Subjt:  -------------------VLIFHEEIIGEEIDFILDNYPPQTPISVLFQEENPGRLP

TrEMBL top hits

e value

%identity

Alignment

A0A1S4DYV7 probable inactive ATP-dependent zinc metalloprotease FTSHI 1, chloroplastic

3.1e-19

33.72

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Query:  HESIVQSDMDDAVDWHRV--RSSG------GQCRRATTEMGVAITSHLLRRYESAKVECCDRISIIPRGQ------------------------------
        HESI QSDMDDA+D   V  R  G      GQCRRATTE+GVAITSHLLRRYESA+VECCDRISIIPRGQ                              
Subjt:  HESIVQSDMDDAVDWHRV--RSSG------GQCRRATTEMGVAITSHLLRRYESAKVECCDRISIIPRGQ------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  -------------------VLIFHEEIIGEEIDFILDNYPPQTPISVLFQEENPGRLP
                           VLI  EEIIGEEIDFILDNYPPQTPIS+L QEENPG LP
Subjt:  -------------------VLIFHEEIIGEEIDFILDNYPPQTPISVLFQEENPGRLP

A0A5A7UX59 Ty3/gypsy retrotransposon protein

1.3e-28

100

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Query:  ERHESIVQSDMDDAVDWHRVRSSGGQCRRATTEMGVAITSHLLRRYESAKVECCDRISIIPRGQV
        ERHESIVQSDMDDAVDWHRVRSSGGQCRRATTEMGVAITSHLLRRYESAKVECCDRISIIPRGQV
Subjt:  ERHESIVQSDMDDAVDWHRVRSSGGQCRRATTEMGVAITSHLLRRYESAKVECCDRISIIPRGQV

A0A5A7UX59 Ty3/gypsy retrotransposon protein

3.4e-26

100

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Query:  QVLIFHEEIIGEEIDFILDNYPPQTPISVLFQEENPGRLPSHGSVEPGKDAKPVCEIGN
        QVLIFHEEIIGEEIDFILDNYPPQTPISVLFQEENPGRLPSHGSVEPGKDAKPVCEIGN
Subjt:  QVLIFHEEIIGEEIDFILDNYPPQTPISVLFQEENPGRLPSHGSVEPGKDAKPVCEIGN

A0A5A7UX59 Ty3/gypsy retrotransposon protein

1.3e-28

100

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Query:  ERHESIVQSDMDDAVDWHRVRSSGGQCRRATTEMGVAITSHLLRRYESAKVECCDRISIIPRGQV
        ERHESIVQSDMDDAVDWHRVRSSGGQCRRATTEMGVAITSHLLRRYESAKVECCDRISIIPRGQV
Subjt:  ERHESIVQSDMDDAVDWHRVRSSGGQCRRATTEMGVAITSHLLRRYESAKVECCDRISIIPRGQV

A0A5D3BRA0 Ty3/gypsy retrotransposon protein

3.4e-26

100

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Query:  QVLIFHEEIIGEEIDFILDNYPPQTPISVLFQEENPGRLPSHGSVEPGKDAKPVCEIGN
        QVLIFHEEIIGEEIDFILDNYPPQTPISVLFQEENPGRLPSHGSVEPGKDAKPVCEIGN
Subjt:  QVLIFHEEIIGEEIDFILDNYPPQTPISVLFQEENPGRLPSHGSVEPGKDAKPVCEIGN

A0A5D3BRA0 Ty3/gypsy retrotransposon protein

3.1e-19

33.72

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Query:  HESIVQSDMDDAVDWHRV--RSSG------GQCRRATTEMGVAITSHLLRRYESAKVECCDRISIIPRGQ------------------------------
        HESI QSDMDDA+D   V  R  G      GQCRRATTE+GVAITSHLLRRYESA+VECCDRISIIPRGQ                              
Subjt:  HESIVQSDMDDAVDWHRV--RSSG------GQCRRATTEMGVAITSHLLRRYESAKVECCDRISIIPRGQ------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  -------------------VLIFHEEIIGEEIDFILDNYPPQTPISVLFQEENPGRLP
                           VLI  EEIIGEEIDFILDNYPPQTPIS+L QEENPG LP
Subjt:  -------------------VLIFHEEIIGEEIDFILDNYPPQTPISVLFQEENPGRLP

A0A6N2M4S7 PHD-type domain-containing protein

4.0e-19

69.33

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Query:  GDSERHESIVQSDMDDAVDWHRVRSSGGQCRRATTEMGVAITSHLLRRYESAKVECCDRISIIPRGQV---LIFH
        G  + H +I+QSDMDDAVD   V    GQCRRATTE+GVA+TSHLLRRYE+AKVECCDRISI+PRGQ    L+FH
Subjt:  GDSERHESIVQSDMDDAVDWHRVRSSGGQCRRATTEMGVAITSHLLRRYESAKVECCDRISIIPRGQV---LIFH

SwissProt top hits

e value

%identity

Alignment

O22993 Probable inactive ATP-dependent zinc metalloprotease FTSHI 1, chloroplastic

7.3e-18

64.1

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Query:  HESIVQSDMDDAVDWHRVRSS--------GGQCRRATTEMGVAITSHLLRRYESAKVECCDRISIIPRGQVL---IFH
        H SI+QSDMDDAVD   V  +         GQCRRATTE+GVAITSHLL RYE+AK+E CDR+SIIPRGQ L   +FH
Subjt:  HESIVQSDMDDAVDWHRVRSS--------GGQCRRATTEMGVAITSHLLRRYESAKVECCDRISIIPRGQVL---IFH

O22993 Probable inactive ATP-dependent zinc metalloprotease FTSHI 1, chloroplastic

1.8e-08

53.06

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Query:  DRISIIPRGQVLIFHEEIIGEEIDFILDNYPPQTPISVLFQEENPGRLP
        ++ +++   +VL+  +EI GE IDFILD+YPPQTP++ L QE+NPG LP
Subjt:  DRISIIPRGQVLIFHEEIIGEEIDFILDNYPPQTPISVLFQEENPGRLP

Arabidopsis top hits

e value

%identity

Alignment

AT4G23940.1 FtsH extracellular protease family

5.2e-19

64.1

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Query:  HESIVQSDMDDAVDWHRVRSS--------GGQCRRATTEMGVAITSHLLRRYESAKVECCDRISIIPRGQVL---IFH
        H SI+QSDMDDAVD   V  +         GQCRRATTE+GVAITSHLL RYE+AK+E CDR+SIIPRGQ L   +FH
Subjt:  HESIVQSDMDDAVDWHRVRSS--------GGQCRRATTEMGVAITSHLLRRYESAKVECCDRISIIPRGQVL---IFH

AT4G23940.1 FtsH extracellular protease family

1.3e-09

53.06

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Query:  DRISIIPRGQVLIFHEEIIGEEIDFILDNYPPQTPISVLFQEENPGRLP
        ++ +++   +VL+  +EI GE IDFILD+YPPQTP++ L QE+NPG LP
Subjt:  DRISIIPRGQVLIFHEEIIGEEIDFILDNYPPQTPISVLFQEENPGRLP

Sequences

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CDS sequence

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ATGGGGCATTCTGTGCAGACAAAAATTCGTCCCCGGGCGCAAAAGGGAGACTCGGAAAGGCATGAATCTATTGTCCAGTCAGACATGGATGATGCAGTTGACTGGCATAG
AGTTAGGTCATCAGGGGGACAATGCCGTAGAGCTACCACAGAAATGGGTGTTGCTATAACTTCACATTTGCTTAGGAGATATGAGAGTGCAAAAGTTGAATGCTGCGATC
GCATTTCAATCATTCCTCGTGGTCAAGTTCTCATCTTCCATGAGGAAATAATTGGAGAAGAAATCGACTTCATTCTAGACAATTACCCTCCACAAACACCTATTAGTGTT
CTTTTTCAAGAGGAAAACCCTGGAAGACTACCTAGCCATGGATCAGTGGAGCCTGGGAAGGATGCAAAACCTGTATGTGAAATTGGAAACTGGTGA

mRNA sequence

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Protein sequence

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MGHSVQTKIRPRAQKGDSERHESIVQSDMDDAVDWHRVRSSGGQCRRATTEMGVAITSHLLRRYESAKVECCDRISIIPRGQVLIFHEEIIGEEIDFILDNYPPQTPISV
LFQEENPGRLPSHGSVEPGKDAKPVCEIGNW

IVF0015982 (gene) of Melon (IVF77) v1 genome