CuGenDBv2

Gene ID	IVF0015997
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	50S ribosomal protein L23, chloroplastic
Genome location	chr12:8676851..8677131
RNA-Seq Expression	IVF0015997
Synteny	IVF0015997
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005739 - mitochondrion (cellular component) GO:0005840 - ribosome (cellular component) GO:0009507 - chloroplast (cellular component) GO:0003729 - mRNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function) GO:0019843 - rRNA binding (molecular function)
InterPro domains	IPR001014 - Ribosomal protein L23/L25, conserved site IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily IPR012678 - Ribosomal protein L23/L15e core domain superfamily IPR013025 - Ribosomal protein L25/L23

Homology

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GenBank top hits

e value

%identity

Alignment

AQR56736.1 ribosomal protein L23 [Adenostoma fasciculatum]

5.02e-46

81.72

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Query:  MDGIKYAVFTDKSIR-----------------TEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLIKKRT
        MDGIKYAVFTDKSIR                 TEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLIKKRT
Subjt:  MDGIKYAVFTDKSIR-----------------TEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLIKKRT

YP_002836133.1 ribosomal protein L23 [Megaleranthis saniculifolia]

5.87e-45

80.65

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Query:  MDGIKYAVFTDKSIR-----------------TEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLIKKRT
        MDGIKYAVFTDKSIR                 TEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPL KKRT
Subjt:  MDGIKYAVFTDKSIR-----------------TEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLIKKRT

YP_009269533.1 ribosomal protein L23 [Aphyllorchis montana]

4.13e-45

79.57

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Query:  MDGIKYAVFTDKSIR-----------------TEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLIKKRT
        MDGIKYAVFT+KS+R                 TEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLIKKRT
Subjt:  MDGIKYAVFTDKSIR-----------------TEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLIKKRT

YP_009342805.1 ribosomal protein L23 [Lucuma campechiana]

5.87e-45

80.65

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Query:  MDGIKYAVFTDKSIR-----------------TEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLIKKRT
        MDGIKYAVFTDKSIR                 TEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPL KKRT
Subjt:  MDGIKYAVFTDKSIR-----------------TEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLIKKRT

YP_009872479.1 ribosomal protein L23 [Paederia scandens]

5.87e-45

80.65

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Query:  MDGIKYAVFTDKSIR-----------------TEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLIKKRT
        MDGIKYAVFTDKSIR                 TEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPL KKRT
Subjt:  MDGIKYAVFTDKSIR-----------------TEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLIKKRT

TrEMBL top hits

e value

%identity

Alignment

A0A1S6EHU6 50S ribosomal protein L23, chloroplastic

1.6e-33

81.72

Show/hide

Query:  MDGIKYAVFTDKSI-----------------RTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLIKKRT
        MDGIKYAVFTDKSI                 RTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLIKKRT
Subjt:  MDGIKYAVFTDKSI-----------------RTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLIKKRT

A0A1V0IJF5 50S ribosomal protein L23, chloroplastic

1.6e-33

81.72

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Query:  MDGIKYAVFTDKSI-----------------RTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLIKKRT
        MDGIKYAVFTDKSI                 RTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLIKKRT
Subjt:  MDGIKYAVFTDKSI-----------------RTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLIKKRT

A0A1V0J454 50S ribosomal protein L23, chloroplastic

1.6e-33

81.72

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Query:  MDGIKYAVFTDKSI-----------------RTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLIKKRT
        MDGIKYAVFTDKSI                 RTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLIKKRT
Subjt:  MDGIKYAVFTDKSI-----------------RTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLIKKRT

A0A411GT17 50S ribosomal protein L23, chloroplastic

7.7e-33

79.57

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Query:  MDGIKYAVFTDKSI-----------------RTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLIKKRT
        MDGIKYAVFT+KS+                 RTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLIKKRT
Subjt:  MDGIKYAVFTDKSI-----------------RTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLIKKRT

A0A411GT83 50S ribosomal protein L23, chloroplastic

7.7e-33

79.57

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Query:  MDGIKYAVFTDKSI-----------------RTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLIKKRT
        MDGIKYAVFT+KS+                 RTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLIKKRT
Subjt:  MDGIKYAVFTDKSI-----------------RTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLIKKRT

SwissProt top hits

e value

%identity

Alignment

A0A378 50S ribosomal protein L23, chloroplastic

2.7e-35

80.65

Show/hide

Query:  MDGIKYAVFTDKSI-----------------RTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLIKKRT
        MDGIKYAVFTDKSI                 RTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPL KKRT
Subjt:  MDGIKYAVFTDKSI-----------------RTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLIKKRT

Q06GT3 50S ribosomal protein L23, chloroplastic

3.6e-35

79.57

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Query:  MDGIKYAVFTDKSI-----------------RTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLIKKRT
        MDGIKYAVFT+KSI                 RTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLI+KRT
Subjt:  MDGIKYAVFTDKSI-----------------RTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLIKKRT

Q09FP7 50S ribosomal protein L23, chloroplastic

2.7e-35

80.65

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Query:  MDGIKYAVFTDKSI-----------------RTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLIKKRT
        MDGIKYAVFTDKSI                 RTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPL KKRT
Subjt:  MDGIKYAVFTDKSI-----------------RTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLIKKRT

Q0ZIV5 50S ribosomal protein L23, chloroplastic

2.7e-35

80.65

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Query:  MDGIKYAVFTDKSI-----------------RTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLIKKRT
        MDGIKYAVFTDKSI                 RTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPL KKRT
Subjt:  MDGIKYAVFTDKSI-----------------RTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLIKKRT

Q4VZK6 50S ribosomal protein L23, chloroplastic

2.7e-35

80.65

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Query:  MDGIKYAVFTDKSI-----------------RTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLIKKRT
        MDGIKYAVFTDKSI                 RTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPL KKRT
Subjt:  MDGIKYAVFTDKSI-----------------RTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLIKKRT

Arabidopsis top hits

e value

%identity

Alignment

ATCG00840.1 ribosomal protein L23.1

1.1e-34

77.42

Show/hide

Query:  MDGIKYAVFTDKSI-----------------RTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLIKKRT
        MDGIKYAVFTDKSI                 RTEIKHWVELFFGVKVIAMNSHRLPGK +RMGPI+GHTMHYRRMIITLQPGYSIPPL KKRT
Subjt:  MDGIKYAVFTDKSI-----------------RTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLIKKRT

ATCG01300.1 ribosomal protein L23

1.1e-34

77.42

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Query:  MDGIKYAVFTDKSI-----------------RTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLIKKRT
        MDGIKYAVFTDKSI                 RTEIKHWVELFFGVKVIAMNSHRLPGK +RMGPI+GHTMHYRRMIITLQPGYSIPPL KKRT
Subjt:  MDGIKYAVFTDKSI-----------------RTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLIKKRT

Sequences

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CDS sequence

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ATGGATGGAATCAAATATGCAGTATTTACAGACAAAAGTATTCGGACAGAAATAAAGCATTGGGTCGAACTCTTCTTTGGTGTCAAGGTAATAGCTATGAATAGTCATCG
ACTCCCGGGAAAGGGTAGAAGAATGGGACCTATTATGGGACATACAATGCATTACAGACGTATGATCATTACGCTTCAACCGGGTTATTCTATTCCACCTCTTATAAAGA
AAAGAACTTAA

mRNA sequence

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Protein sequence

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MDGIKYAVFTDKSIRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLIKKRT

IVF0015997 (gene) of Melon (IVF77) v1 genome