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IVF0016031 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0016031
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionDNA/RNA polymerases superfamily protein
Genome locationchr05:18662041..18663880
RNA-Seq ExpressionIVF0016031
SyntenyIVF0016031
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003824 - catalytic activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035225.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]6.72e-3465.18Show/hide
Query:  MHQNRPGKGRSGRFRSSGFSHPISSTKGSYVARSDRVVSESCKSSVCYNCGQPGHYRRDCPHLI----------------LPRTTRTSGEGSSKGKQRGP
        MH+NR G+G     RSSG SHPISS  GSY+A+SDRVVS+S KSSVCYNCGQPGHYRRDCP+LI                 PRT RTSGEGSS GKQ+GP
Subjt:  MHQNRPGKGRSGRFRSSGFSHPISSTKGSYVARSDRVVSESCKSSVCYNCGQPGHYRRDCPHLI----------------LPRTTRTSGEGSSKGKQRGP

Query:  VGRSLQEGKVLS
        VGRS QEGKV +
Subjt:  VGRSLQEGKVLS

KAA0042144.1 putative polyprotein, identical [Cucumis melo var. makuwa]9.54e-3655.48Show/hide
Query:  MHQNRPGKGRSGRF-----------------------------RSSGFSHPISSTKGSYVARSDRVVSESCKSSVCYNCGQPGHYRRDCPHLI-------
        MHQNR GK RSGRF                             RSSG SHPISS  GS++ARSDRVVSES KSSVCYNCGQP HYRR+CPHLI       
Subjt:  MHQNRPGKGRSGRF-----------------------------RSSGFSHPISSTKGSYVARSDRVVSESCKSSVCYNCGQPGHYRRDCPHLI-------

Query:  ---------LPRTTRTSGEGSSKGKQRGPVGRSLQEGKVLSSICGR
                  PRTTRTSGEGSS GKQ+GP GRS QEGKV + I  R
Subjt:  ---------LPRTTRTSGEGSSKGKQRGPVGRSLQEGKVLSSICGR

KAA0042457.1 reverse transcriptase [Cucumis melo var. makuwa]2.72e-3566.96Show/hide
Query:  MHQNRPGKGRSGRFRSSGFSHPISSTKGSYVARSDRVVSESCKSSVCYNCGQPGHYRRDCPHLI----------------LPRTTRTSGEGSSKGKQRGP
        MH+NR G+G     RSSG SHPISST GS++ARSDRVVSES KSSVCYNC QPGHYRRDCPHLI                 PRTTRTSGEGSS GKQ+GP
Subjt:  MHQNRPGKGRSGRFRSSGFSHPISSTKGSYVARSDRVVSESCKSSVCYNCGQPGHYRRDCPHLI----------------LPRTTRTSGEGSSKGKQRGP

Query:  VGRSLQEGKVLS
        VGRS  EGKV +
Subjt:  VGRSLQEGKVLS

KAA0060484.1 Gag protease polyprotein-like protein [Cucumis melo var. makuwa]9.20e-3556.74Show/hide
Query:  MHQNRPGKGRSGRF-----------------------------RSSGFSHPISSTKGSYVARSDRVVSESCKSSVCYNCGQPGHYRRDCPHLI-------
        MH+NR GK RSGRF                             RSSG SHPISST GS++ARSDRVVSES KSSVCYNCGQPGHYRRDCPHLI       
Subjt:  MHQNRPGKGRSGRF-----------------------------RSSGFSHPISSTKGSYVARSDRVVSESCKSSVCYNCGQPGHYRRDCPHLI-------

Query:  ---------LPRTTRTSGEGSSKGKQRGPVGRSLQEGKVLS
                  PR T TSGEGSS GKQ+GPVGRS QEGKV +
Subjt:  ---------LPRTTRTSGEGSSKGKQRGPVGRSLQEGKVLS

TYK22919.1 reverse transcriptase [Cucumis melo var. makuwa]2.72e-3566.96Show/hide
Query:  MHQNRPGKGRSGRFRSSGFSHPISSTKGSYVARSDRVVSESCKSSVCYNCGQPGHYRRDCPHLI----------------LPRTTRTSGEGSSKGKQRGP
        MH+NR G+G     RSSG SHPISST GS++ARSDRVVSES KSSVCYNC QPGHYRRDCPHLI                 PRTTRTSGEGSS GKQ+GP
Subjt:  MHQNRPGKGRSGRFRSSGFSHPISSTKGSYVARSDRVVSESCKSSVCYNCGQPGHYRRDCPHLI----------------LPRTTRTSGEGSSKGKQRGP

Query:  VGRSLQEGKVLS
        VGRS  EGKV +
Subjt:  VGRSLQEGKVLS

TrEMBL top hitse value%identityAlignment
A0A5A7TFE2 Putative polyprotein, identical6.2e-2955.48Show/hide
Query:  MHQNRPGKGRSGRF-----------------------------RSSGFSHPISSTKGSYVARSDRVVSESCKSSVCYNCGQPGHYRRDCPHLI-------
        MHQNR GK RSGRF                             RSSG SHPISS  GS++ARSDRVVSES KSSVCYNCGQP HYRR+CPHLI       
Subjt:  MHQNRPGKGRSGRF-----------------------------RSSGFSHPISSTKGSYVARSDRVVSESCKSSVCYNCGQPGHYRRDCPHLI-------

Query:  ---------LPRTTRTSGEGSSKGKQRGPVGRSLQEGKVLSSICGR
                  PRTTRTSGEGSS GKQ+GP GRS QEGKV + I  R
Subjt:  ---------LPRTTRTSGEGSSKGKQRGPVGRSLQEGKVLSSICGR

A0A5A7TL70 Reverse transcriptase1.6e-2966.96Show/hide
Query:  MHQNRPGKGRSGRFRSSGFSHPISSTKGSYVARSDRVVSESCKSSVCYNCGQPGHYRRDCPHLI----------------LPRTTRTSGEGSSKGKQRGP
        MH+NR G+G     RSSG SHPISST GS++ARSDRVVSES KSSVCYNC QPGHYRRDCPHLI                 PRTTRTSGEGSS GKQ+GP
Subjt:  MHQNRPGKGRSGRFRSSGFSHPISSTKGSYVARSDRVVSESCKSSVCYNCGQPGHYRRDCPHLI----------------LPRTTRTSGEGSSKGKQRGP

Query:  VGRSLQEGKVLS
        VGRS  EGKV +
Subjt:  VGRSLQEGKVLS

A0A5A7UZM6 Gag protease polyprotein-like protein4.7e-2956.74Show/hide
Query:  MHQNRPGKGRSGRF-----------------------------RSSGFSHPISSTKGSYVARSDRVVSESCKSSVCYNCGQPGHYRRDCPHLI-------
        MH+NR GK RSGRF                             RSSG SHPISST GS++ARSDRVVSES KSSVCYNCGQPGHYRRDCPHLI       
Subjt:  MHQNRPGKGRSGRF-----------------------------RSSGFSHPISSTKGSYVARSDRVVSESCKSSVCYNCGQPGHYRRDCPHLI-------

Query:  ---------LPRTTRTSGEGSSKGKQRGPVGRSLQEGKVLS
                  PR T TSGEGSS GKQ+GPVGRS QEGKV +
Subjt:  ---------LPRTTRTSGEGSSKGKQRGPVGRSLQEGKVLS

A0A5D3DES5 DNA/RNA polymerases superfamily protein1.8e-2865.18Show/hide
Query:  MHQNRPGKGRSGRFRSSGFSHPISSTKGSYVARSDRVVSESCKSSVCYNCGQPGHYRRDCPHLI----------------LPRTTRTSGEGSSKGKQRGP
        MH+NR G+G     RSSG SHPISS  GSY+A+SDRVVS+S KSSVCYNCGQPGHYRRDCP+LI                 PRT RTSGEGSS GKQ+GP
Subjt:  MHQNRPGKGRSGRFRSSGFSHPISSTKGSYVARSDRVVSESCKSSVCYNCGQPGHYRRDCPHLI----------------LPRTTRTSGEGSSKGKQRGP

Query:  VGRSLQEGKVLS
        VGRS QEGKV +
Subjt:  VGRSLQEGKVLS

A0A5D3DI38 Reverse transcriptase1.6e-2966.96Show/hide
Query:  MHQNRPGKGRSGRFRSSGFSHPISSTKGSYVARSDRVVSESCKSSVCYNCGQPGHYRRDCPHLI----------------LPRTTRTSGEGSSKGKQRGP
        MH+NR G+G     RSSG SHPISST GS++ARSDRVVSES KSSVCYNC QPGHYRRDCPHLI                 PRTTRTSGEGSS GKQ+GP
Subjt:  MHQNRPGKGRSGRFRSSGFSHPISSTKGSYVARSDRVVSESCKSSVCYNCGQPGHYRRDCPHLI----------------LPRTTRTSGEGSSKGKQRGP

Query:  VGRSLQEGKVLS
        VGRS  EGKV +
Subjt:  VGRSLQEGKVLS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATCAAAATCGACCAGGTAAAGGAAGAAGTGGAAGATTTAGATCTAGCGGTTTTAGTCATCCTATATCTTCTACAAAAGGTTCTTATGTTGCTCGATCAGATAGGGT
TGTATCAGAGTCTTGCAAGAGCAGTGTATGTTATAACTGTGGTCAGCCAGGACATTATCGTAGAGACTGTCCACATTTGATACTGCCAAGAACCACAAGAACAAGTGGTG
AAGGCTCTAGTAAAGGAAAACAGAGAGGACCAGTAGGTCGCTCTCTTCAAGAAGGGAAAGTATTATCGTCGATTTGTGGAAGGGTTTTCGAAATTGGCACTTTCGTTAAC
CAACCTAACCAAGAAGAATGTAAAGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCATCAAAATCGACCAGGTAAAGGAAGAAGTGGAAGATTTAGATCTAGCGGTTTTAGTCATCCTATATCTTCTACAAAAGGTTCTTATGTTGCTCGATCAGATAGGGT
TGTATCAGAGTCTTGCAAGAGCAGTGTATGTTATAACTGTGGTCAGCCAGGACATTATCGTAGAGACTGTCCACATTTGATACTGCCAAGAACCACAAGAACAAGTGGTG
AAGGCTCTAGTAAAGGAAAACAGAGAGGACCAGTAGGTCGCTCTCTTCAAGAAGGGAAAGTATTATCGTCGATTTGTGGAAGGGTTTTCGAAATTGGCACTTTCGTTAAC
CAACCTAACCAAGAAGAATGTAAAGTTTGA
Protein sequenceShow/hide protein sequence
MHQNRPGKGRSGRFRSSGFSHPISSTKGSYVARSDRVVSESCKSSVCYNCGQPGHYRRDCPHLILPRTTRTSGEGSSKGKQRGPVGRSLQEGKVLSSICGRVFEIGTFVN
QPNQEECKV