; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0016113 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0016113
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionDNA-directed RNA polymerases I, II, and III subunit RPABC5
Genome locationtig00000281:33234..34741
RNA-Seq ExpressionIVF0016113
SyntenyIVF0016113
Gene Ontology termsGO:0006360 - transcription by RNA polymerase I (biological process)
GO:0006366 - transcription by RNA polymerase II (biological process)
GO:0042797 - tRNA transcription by RNA polymerase III (biological process)
GO:0005665 - RNA polymerase II, core complex (cellular component)
GO:0005666 - RNA polymerase III complex (cellular component)
GO:0005736 - RNA polymerase I complex (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR000268 - DNA-directed RNA polymerase, subunit N/Rpb10
IPR020789 - RNA polymerases, subunit N, zinc binding site
IPR023580 - RNA polymerase subunit RPB10


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AFK37774.1 unknown [Lotus japonicus]8.67e-4697.18Show/hide
Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS
        MIIPVRCFTCGKVIGNKWD YLDLLQ+DYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS

XP_004138685.1 DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Cucumis sativus]8.98e-48100Show/hide
Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS
        MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS

XP_010696273.1 PREDICTED: DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Beta vulgaris subsp. vulgaris]8.67e-4697.18Show/hide
Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS
        MIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS

XP_022961651.1 DNA-directed RNA polymerase subunit 10-like protein [Cucurbita moschata]7.40e-4798.59Show/hide
Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS
        MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSD S
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS

XP_023536875.1 DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Cucurbita pepo subsp. pepo]1.50e-4698.59Show/hide
Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS
        MIIPVRCFTCGKVIGNKWD YLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS

TrEMBL top hitse value%identityAlignment
A0A0A0LPW4 Uncharacterized protein1.3e-34100Show/hide
Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS
        MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS

A0A1S3C3L9 DNA-directed RNA polymerases I, II, and III subunit RPABC51.3e-34100Show/hide
Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS
        MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS

A0A6J1BRM3 DNA-directed RNA polymerases I, II, and III subunit RPABC51.3e-34100Show/hide
Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS
        MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS

A0A6J1GGE0 DNA-directed RNA polymerases I, II, and III subunit RPABC51.3e-34100Show/hide
Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS
        MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS

A0A6J1KRF4 DNA-directed RNA polymerases I, II, and III subunit RPABC51.3e-34100Show/hide
Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS
        MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS

SwissProt top hitse value%identityAlignment
Q32P78 DNA-directed RNA polymerases I, II, and III subunit RPABC56.7e-2880.6Show/hide
Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDK
        MIIPVRCFTCGK++GNKW+ YL LLQA+Y+EGDALDALGL RYCCRRML+ HVDLIEKLLNY  L+K
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDK

Q39290 DNA-directed RNA polymerases I, II, and III subunit RPABC52.4e-3391.55Show/hide
Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS
        MIIPVRCFTCGKVIGNKWD YLDLLQ DY+EGDALDAL LVRYCCRRMLMTHVDLIEKLLNYNTL+KSD S
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS

Q6QN04 DNA-directed RNA polymerases I, II, and III subunit RPABC56.7e-2880.6Show/hide
Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDK
        MIIPVRCFTCGK++GNKW+ YL LLQA+Y+EGDALDALGL RYCCRRML+ HVDLIEKLLNY  L+K
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDK

Q8LFJ6 DNA-directed RNA polymerases II, IV and V subunit 102.4e-3391.55Show/hide
Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS
        MIIPVRCFTCGKVIGNKWD YLDLLQ DY+EGDALDAL LVRYCCRRMLMTHVDLIEKLLNYNTL+KSD S
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS

Q9SYA6 DNA-directed RNA polymerase subunit 10-like protein1.8e-3391.3Show/hide
Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSD
        MI+PVRCFTCGKVIGNKWD YL+LLQADY+EGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNT++KSD
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSD

Arabidopsis top hitse value%identityAlignment
AT1G11475.1 RNA polymerases N / 8 kDa subunit1.7e-3491.55Show/hide
Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS
        MIIPVRCFTCGKVIGNKWD YLDLLQ DY+EGDALDAL LVRYCCRRMLMTHVDLIEKLLNYNTL+KSD S
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS

AT1G61700.1 RNA polymerases N / 8 kDa subunit1.3e-3491.3Show/hide
Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSD
        MI+PVRCFTCGKVIGNKWD YL+LLQADY+EGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNT++KSD
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCATTCCAGTTCGTTGCTTCACTTGCGGAAAGGTGATTGGAAACAAATGGGATCATTACCTTGATCTTCTGCAGGCAGATTATTCAGAAGGTGATGCACTTGATGC
TTTGGGTTTGGTTCGCTACTGCTGTAGGCGAATGCTCATGACTCATGTCGACCTTATTGAGAAGCTTCTTAATTACAACACTCTGGATAAGTCTGATACCAGTTAG
mRNA sequenceShow/hide mRNA sequence
AAAAGAATAGGGATATATATTGCCGCTGAGGTAGCGTCGCGCGTCGGATATCAGAAAGGGGTTTGGGCAAAACCTCTCGGAACCCTAGAAGGCGAAGTTGGAGGCATCGT
CGGTCGGCGACAGAAGAGAGTGAAGATGATCATTCCAGTTCGTTGCTTCACTTGCGGAAAGGTGATTGGAAACAAATGGGATCATTACCTTGATCTTCTGCAGGCAGATT
ATTCAGAAGGTGATGCACTTGATGCTTTGGGTTTGGTTCGCTACTGCTGTAGGCGAATGCTCATGACTCATGTCGACCTTATTGAGAAGCTTCTTAATTACAACACTCTG
GATAAGTCTGATACCAGTTAGCCAAGCGACGAGTTTTCTGATTTTTCACGTGCAGCCGTATTGGCTTTATGATGGTGTTTGTGTTCAGTTATGAGAAAAGAAAAACTACC
GGAGGGCTCGAGTTAAGCTATGTCTTGGCATTCTAGTTTGTTTAATTATGGATTCATACGGACTCGAGTACTTAATCTTCTACGTGTTTATTAGTATTTAGGAGTTGTAT
ATTAGAGCCGTGTAGCATTTTCCATAGGATGCAGTTACTCATTGATTTTAGTTCTCTGACGTTTTTGTGGTGTTTACATCCAGTTAAGAGAACAAAATTTATAGGATCAT
GTAGTGCAAGATTTGATTTAAGCTATATCTTGGTGTCCTGGTTTGTTTGCTTATTGATACATACGAACCCAGGTATTTAATCTTCTATGTGTTCATTAGTATTTAGGAGA
TATATGAGAGTTGTGTAGCATTATCCATATGCAGTCATTCTGTCAGTATTGACGTTTTTGTGGTGTTTGCATCTAGTTAAGAGAAAACAGAACTATGGGAATATTCAGTT
CAGAACTTGAGTTAAG
Protein sequenceShow/hide protein sequence
MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS