; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0016130 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0016130
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr01:29072167..29073189
RNA-Seq ExpressionIVF0016130
SyntenyIVF0016130
Gene Ontology termsNA
InterPro domainsIPR000477 - Reverse transcriptase domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045532.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]4.84e-13459.15Show/hide
Query:  MDYLSRLLNHLEKRQAIKGAKINNSYSITHLLFADDILIFVEDDDVSIKNLQTVLMLFELASRLKINLLKSTISLVNISNDRASKVASILGFTQQFLPIN
        MDYLSRLL+HLE + AIKG   NN  +I+HLLFADD+LIFVED++  + NLQ  L LFE AS L  N  KSTIS +NIS  R  ++AS  GF  +FLP+N
Subjt:  MDYLSRLLNHLEKRQAIKGAKINNSYSITHLLFADDILIFVEDDDVSIKNLQTVLMLFELASRLKINLLKSTISLVNISNDRASKVASILGFTQQFLPIN

Query:  YLGVPLGGKPISKVFWSQIIENIHKKLSSWKYNHITKGERLTLIRSSLESNPTYQLSIFKAPNQIYKDIDKIWRNFLWGSISNSNNPHLINWGICTLPKD
        YLGVPLGG P S+ FW Q IE IHKKL+ WKY+ I+KG RLTL+++SL S PTYQLS FKAP  +YK+I+K WR+FLWG   +  N HLINW ICT PK+
Subjt:  YLGVPLGGKPISKVFWSQIIENIHKKLSSWKYNHITKGERLTLIRSSLESNPTYQLSIFKAPNQIYKDIDKIWRNFLWGSISNSNNPHLINWGICTLPKD

Query:  KGGLGITRMKASNFALLTKWLCCYHRELEALWKSIIDAKYSKTFTGGIPYFGKYSSSNAPWRSIIKGKDWFNSKIIWKINSGGSHSFWHSNWANSISLNQ
         GG+GI+++K +N ALL KWL  YH E  +LWK  IDAKY+K   G IP  G+ SS+N+PW +I K KDW+ SKI W  N G S SFWHS W N+I L+ 
Subjt:  KGGLGITRMKASNFALLTKWLCCYHRELEALWKSIIDAKYSKTFTGGIPYFGKYSSSNAPWRSIIKGKDWFNSKIIWKINSGGSHSFWHSNWANSISLNQ

Query:  KAPRLYALSSCKEATVKEVWDPGTNDWD
        + PRLYALS+ + ATVKE+WD G++DW+
Subjt:  KAPRLYALSSCKEATVKEVWDPGTNDWD

KAA0048676.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.77e-253100Show/hide
Query:  MDYLSRLLNHLEKRQAIKGAKINNSYSITHLLFADDILIFVEDDDVSIKNLQTVLMLFELASRLKINLLKSTISLVNISNDRASKVASILGFTQQFLPIN
        MDYLSRLLNHLEKRQAIKGAKINNSYSITHLLFADDILIFVEDDDVSIKNLQTVLMLFELASRLKINLLKSTISLVNISNDRASKVASILGFTQQFLPIN
Subjt:  MDYLSRLLNHLEKRQAIKGAKINNSYSITHLLFADDILIFVEDDDVSIKNLQTVLMLFELASRLKINLLKSTISLVNISNDRASKVASILGFTQQFLPIN

Query:  YLGVPLGGKPISKVFWSQIIENIHKKLSSWKYNHITKGERLTLIRSSLESNPTYQLSIFKAPNQIYKDIDKIWRNFLWGSISNSNNPHLINWGICTLPKD
        YLGVPLGGKPISKVFWSQIIENIHKKLSSWKYNHITKGERLTLIRSSLESNPTYQLSIFKAPNQIYKDIDKIWRNFLWGSISNSNNPHLINWGICTLPKD
Subjt:  YLGVPLGGKPISKVFWSQIIENIHKKLSSWKYNHITKGERLTLIRSSLESNPTYQLSIFKAPNQIYKDIDKIWRNFLWGSISNSNNPHLINWGICTLPKD

Query:  KGGLGITRMKASNFALLTKWLCCYHRELEALWKSIIDAKYSKTFTGGIPYFGKYSSSNAPWRSIIKGKDWFNSKIIWKINSGGSHSFWHSNWANSISLNQ
        KGGLGITRMKASNFALLTKWLCCYHRELEALWKSIIDAKYSKTFTGGIPYFGKYSSSNAPWRSIIKGKDWFNSKIIWKINSGGSHSFWHSNWANSISLNQ
Subjt:  KGGLGITRMKASNFALLTKWLCCYHRELEALWKSIIDAKYSKTFTGGIPYFGKYSSSNAPWRSIIKGKDWFNSKIIWKINSGGSHSFWHSNWANSISLNQ

Query:  KAPRLYALSSCKEATVKEVWDPGTNDWDKRLELQTKKASQ
        KAPRLYALSSCKEATVKEVWDPGTNDWDKRLELQTKKASQ
Subjt:  KAPRLYALSSCKEATVKEVWDPGTNDWDKRLELQTKKASQ

KAA0056839.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]7.51e-13459.76Show/hide
Query:  MDYLSRLLNHLEKRQAIKGAKINNSYSITHLLFADDILIFVEDDDVSIKNLQTVLMLFELASRLKINLLKSTISLVNISNDRASKVASILGFTQQFLPIN
        MDYLSRLL+HLE + AIKG   NN  +I+HLLFADD+LIFVED++  + NLQ  L LFE AS L  N  KSTIS +NIS  R  ++AS  GF  +FLP+N
Subjt:  MDYLSRLLNHLEKRQAIKGAKINNSYSITHLLFADDILIFVEDDDVSIKNLQTVLMLFELASRLKINLLKSTISLVNISNDRASKVASILGFTQQFLPIN

Query:  YLGVPLGGKPISKVFWSQIIENIHKKLSSWKYNHITKGERLTLIRSSLESNPTYQLSIFKAPNQIYKDIDKIWRNFLWGSISNSNNPHLINWGICTLPKD
        YLGVPLGG P S+ FWSQ IE IHKKL+ WKY+ I+KG RLTL+++SL S PTYQLS FKAP  +YK+I+K WR+FLWG   +  N HLINW ICT PK+
Subjt:  YLGVPLGGKPISKVFWSQIIENIHKKLSSWKYNHITKGERLTLIRSSLESNPTYQLSIFKAPNQIYKDIDKIWRNFLWGSISNSNNPHLINWGICTLPKD

Query:  KGGLGITRMKASNFALLTKWLCCYHRELEALWKSIIDAKYSKTFTGGIPYFGKYSSSNAPWRSIIKGKDWFNSKIIWKINSGGSHSFWHSNWANSISLNQ
         GGLGI+++K +N ALL KWL  YH E  +LWK  IDAKY+K   G IP  G+ SS+N+PW +I K KDW+ SKI W  N G S SFWHS W N+I L+ 
Subjt:  KGGLGITRMKASNFALLTKWLCCYHRELEALWKSIIDAKYSKTFTGGIPYFGKYSSSNAPWRSIIKGKDWFNSKIIWKINSGGSHSFWHSNWANSISLNQ

Query:  KAPRLYALSSCKEATVKEVWDPGTNDWD
        + PRLYALS+ + ATVKE+WD G++DW+
Subjt:  KAPRLYALSSCKEATVKEVWDPGTNDWD

TYK10887.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.10e-13159.56Show/hide
Query:  MDYLSRLLNHLEKRQAIKGAKINNSYSITHLLFADDILIFVEDDDVSIKNLQTVLMLFELASRLKINLLKSTISLVNISNDRASKVASILGFTQQFLPIN
        MDYLSRLL+HLE + AIKG   NN  +I+HLLFADD+LIFVED++  + NLQ  L LFE AS L  NLLKSTI+ +NIS DR  ++A + GF  +FLP+N
Subjt:  MDYLSRLLNHLEKRQAIKGAKINNSYSITHLLFADDILIFVEDDDVSIKNLQTVLMLFELASRLKINLLKSTISLVNISNDRASKVASILGFTQQFLPIN

Query:  YLGVPLGGKPISKVFWSQIIENIHKKLSSWKYNHITKGERLTLIRSSLESNPTYQLSIFKAPNQIYKDIDKIWRNFLWGSISNSNNPHLINWGICTLPKD
        YLGVPLGG P S+ FW Q IE IHKKL+ WKY+ I KG RLTL+++SL S PTYQLS FKA   +YK+I+K WR+FLWG   +  N HLINW ICT PK+
Subjt:  YLGVPLGGKPISKVFWSQIIENIHKKLSSWKYNHITKGERLTLIRSSLESNPTYQLSIFKAPNQIYKDIDKIWRNFLWGSISNSNNPHLINWGICTLPKD

Query:  KGGLGITRMKASNFALLTKWLCCYHRELEALWKSIIDAKYSKTFTGGIPYFGKYSSSNAPWRSIIKGKDWFNSKIIWKINSGGSHSFWHSNWANSISLNQ
          GLGI+++K +N ALL KWL  YH E  +LWK  IDAKY+K   G IP  G+ SS+ +PW +I K KDWF SKI W  N G S SFWHS W N+I L+ 
Subjt:  KGGLGITRMKASNFALLTKWLCCYHRELEALWKSIIDAKYSKTFTGGIPYFGKYSSSNAPWRSIIKGKDWFNSKIIWKINSGGSHSFWHSNWANSISLNQ

Query:  KAPRLYALSSCKEATVKEV
        + PRLYALS+ + ATVKEV
Subjt:  KAPRLYALSSCKEATVKEV

TYK28859.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]6.85e-13459.15Show/hide
Query:  MDYLSRLLNHLEKRQAIKGAKINNSYSITHLLFADDILIFVEDDDVSIKNLQTVLMLFELASRLKINLLKSTISLVNISNDRASKVASILGFTQQFLPIN
        MDYLSRLL+HLE + AIKG   NN  +I+HLLFADD+LIFVED++  + NLQ  L LFE AS L  N  KSTIS +NIS  R  ++AS  GF  +FLP+N
Subjt:  MDYLSRLLNHLEKRQAIKGAKINNSYSITHLLFADDILIFVEDDDVSIKNLQTVLMLFELASRLKINLLKSTISLVNISNDRASKVASILGFTQQFLPIN

Query:  YLGVPLGGKPISKVFWSQIIENIHKKLSSWKYNHITKGERLTLIRSSLESNPTYQLSIFKAPNQIYKDIDKIWRNFLWGSISNSNNPHLINWGICTLPKD
        YLGVPLGG P S+ FW Q IE IHKKL+ WKY+ I+KG RLTL+++SL S PTYQLS FKAP  +YK+I+K WR+FLWG   +  N HLINW ICT PK+
Subjt:  YLGVPLGGKPISKVFWSQIIENIHKKLSSWKYNHITKGERLTLIRSSLESNPTYQLSIFKAPNQIYKDIDKIWRNFLWGSISNSNNPHLINWGICTLPKD

Query:  KGGLGITRMKASNFALLTKWLCCYHRELEALWKSIIDAKYSKTFTGGIPYFGKYSSSNAPWRSIIKGKDWFNSKIIWKINSGGSHSFWHSNWANSISLNQ
         GG+GI+++K +N ALL KWL  YH E  +LWK  IDAKY+K   G IP  G+ SS+N+PW +I K KDW+ SKI W  N G S SFWHS W N+I L+ 
Subjt:  KGGLGITRMKASNFALLTKWLCCYHRELEALWKSIIDAKYSKTFTGGIPYFGKYSSSNAPWRSIIKGKDWFNSKIIWKINSGGSHSFWHSNWANSISLNQ

Query:  KAPRLYALSSCKEATVKEVWDPGTNDWD
        + PRLYALS+ + ATVKE+WD G++DW+
Subjt:  KAPRLYALSSCKEATVKEVWDPGTNDWD

TrEMBL top hitse value%identityAlignment
A0A5A7TQA8 LINE-1 retrotransposable element ORF2 protein1.4e-11058.79Show/hide
Query:  MDYLSRLLNHLEKRQAIKGAKINNSYSITHLLFADDILIFVEDDDVSIKNLQTVLMLFELASRLKINLLKSTISLVNISNDRASKVASILGFTQQFLPIN
        MDYLSRLL+HLE + AIKG   NN  +I+HLLFADD+LIFVED++  + NLQ  L LFE AS L  N  KSTIS +NIS  R  ++AS  GF  +FLP+N
Subjt:  MDYLSRLLNHLEKRQAIKGAKINNSYSITHLLFADDILIFVEDDDVSIKNLQTVLMLFELASRLKINLLKSTISLVNISNDRASKVASILGFTQQFLPIN

Query:  YLGVPLGGKPISKVFWSQIIENIHKKLSSWKYNHITKGERLTLIRSSLESNPTYQLSIFKAPNQIYKDIDKIWRNFLWGSISNSNNPHLINWGICTLPKD
        YLGVPLGG P S+ FW Q IE IHKKL+ WKY+ I+KG RLTL+++SL S PTYQLS FKAP  +YK+I+K WR+FLWG   +  N HLINW ICT PK+
Subjt:  YLGVPLGGKPISKVFWSQIIENIHKKLSSWKYNHITKGERLTLIRSSLESNPTYQLSIFKAPNQIYKDIDKIWRNFLWGSISNSNNPHLINWGICTLPKD

Query:  KGGLGITRMKASNFALLTKWLCCYHRELEALWKSIIDAKYSKTFTGGIPYFGKYSSSNAPWRSIIKGKDWFNSKIIWKINSGGSHSFWHSNWANSISLNQ
         GG+GI+++K +N ALL KWL  YH E  +LWK  IDAKY+K   G IP  G+ SS+N+PW +I K KDW+ SKI W  N G S SFWHS W N+I L+ 
Subjt:  KGGLGITRMKASNFALLTKWLCCYHRELEALWKSIIDAKYSKTFTGGIPYFGKYSSSNAPWRSIIKGKDWFNSKIIWKINSGGSHSFWHSNWANSISLNQ

Query:  KAPRLYALSSCKEATVKEVWDPGTNDWDKR
        + PRLYALS+ + ATVKE+WD G++DW+ +
Subjt:  KAPRLYALSSCKEATVKEVWDPGTNDWDKR

A0A5A7U366 LINE-1 retrotransposable element ORF2 protein1.2e-197100Show/hide
Query:  MDYLSRLLNHLEKRQAIKGAKINNSYSITHLLFADDILIFVEDDDVSIKNLQTVLMLFELASRLKINLLKSTISLVNISNDRASKVASILGFTQQFLPIN
        MDYLSRLLNHLEKRQAIKGAKINNSYSITHLLFADDILIFVEDDDVSIKNLQTVLMLFELASRLKINLLKSTISLVNISNDRASKVASILGFTQQFLPIN
Subjt:  MDYLSRLLNHLEKRQAIKGAKINNSYSITHLLFADDILIFVEDDDVSIKNLQTVLMLFELASRLKINLLKSTISLVNISNDRASKVASILGFTQQFLPIN

Query:  YLGVPLGGKPISKVFWSQIIENIHKKLSSWKYNHITKGERLTLIRSSLESNPTYQLSIFKAPNQIYKDIDKIWRNFLWGSISNSNNPHLINWGICTLPKD
        YLGVPLGGKPISKVFWSQIIENIHKKLSSWKYNHITKGERLTLIRSSLESNPTYQLSIFKAPNQIYKDIDKIWRNFLWGSISNSNNPHLINWGICTLPKD
Subjt:  YLGVPLGGKPISKVFWSQIIENIHKKLSSWKYNHITKGERLTLIRSSLESNPTYQLSIFKAPNQIYKDIDKIWRNFLWGSISNSNNPHLINWGICTLPKD

Query:  KGGLGITRMKASNFALLTKWLCCYHRELEALWKSIIDAKYSKTFTGGIPYFGKYSSSNAPWRSIIKGKDWFNSKIIWKINSGGSHSFWHSNWANSISLNQ
        KGGLGITRMKASNFALLTKWLCCYHRELEALWKSIIDAKYSKTFTGGIPYFGKYSSSNAPWRSIIKGKDWFNSKIIWKINSGGSHSFWHSNWANSISLNQ
Subjt:  KGGLGITRMKASNFALLTKWLCCYHRELEALWKSIIDAKYSKTFTGGIPYFGKYSSSNAPWRSIIKGKDWFNSKIIWKINSGGSHSFWHSNWANSISLNQ

Query:  KAPRLYALSSCKEATVKEVWDPGTNDWDKRLELQTKKASQ
        KAPRLYALSSCKEATVKEVWDPGTNDWDKRLELQTKKASQ
Subjt:  KAPRLYALSSCKEATVKEVWDPGTNDWDKRLELQTKKASQ

A0A5A7US62 LINE-1 retrotransposable element ORF2 protein6.3e-11159.09Show/hide
Query:  MDYLSRLLNHLEKRQAIKGAKINNSYSITHLLFADDILIFVEDDDVSIKNLQTVLMLFELASRLKINLLKSTISLVNISNDRASKVASILGFTQQFLPIN
        MDYLSRLL+HLE + AIKG   NN  +I+HLLFADD+LIFVED++  + NLQ  L LFE AS L  N  KSTIS +NIS  R  ++AS  GF  +FLP+N
Subjt:  MDYLSRLLNHLEKRQAIKGAKINNSYSITHLLFADDILIFVEDDDVSIKNLQTVLMLFELASRLKINLLKSTISLVNISNDRASKVASILGFTQQFLPIN

Query:  YLGVPLGGKPISKVFWSQIIENIHKKLSSWKYNHITKGERLTLIRSSLESNPTYQLSIFKAPNQIYKDIDKIWRNFLWGSISNSNNPHLINWGICTLPKD
        YLGVPLGG P S+ FW Q IE IHKKL+ WKY+ I+KG RLTL+++SL S PTYQLS FKAP  +YK+I+K WR+FLWG   +  N HLINW ICT PK+
Subjt:  YLGVPLGGKPISKVFWSQIIENIHKKLSSWKYNHITKGERLTLIRSSLESNPTYQLSIFKAPNQIYKDIDKIWRNFLWGSISNSNNPHLINWGICTLPKD

Query:  KGGLGITRMKASNFALLTKWLCCYHRELEALWKSIIDAKYSKTFTGGIPYFGKYSSSNAPWRSIIKGKDWFNSKIIWKINSGGSHSFWHSNWANSISLNQ
         GGLGI+++K +N ALL KWL  YH E  +LWK  IDAKY+K   G IP  G+ SS+N+PW +I K KDW+ SKI W  N G S SFWHS W N+I L+ 
Subjt:  KGGLGITRMKASNFALLTKWLCCYHRELEALWKSIIDAKYSKTFTGGIPYFGKYSSSNAPWRSIIKGKDWFNSKIIWKINSGGSHSFWHSNWANSISLNQ

Query:  KAPRLYALSSCKEATVKEVWDPGTNDWDKR
        + PRLYALS+ + ATVKE+WD G++DW+ +
Subjt:  KAPRLYALSSCKEATVKEVWDPGTNDWDKR

A0A5A7UTI6 LINE-1 retrotransposable element ORF2 protein2.8e-11159.76Show/hide
Query:  MDYLSRLLNHLEKRQAIKGAKINNSYSITHLLFADDILIFVEDDDVSIKNLQTVLMLFELASRLKINLLKSTISLVNISNDRASKVASILGFTQQFLPIN
        MDYLSRLL+HLE + AIKG   NN  +I+HLLFADD+LIFVED++  + NLQ  L LFE AS L  N  KSTIS +NIS  R  ++AS  GF  +FLP+N
Subjt:  MDYLSRLLNHLEKRQAIKGAKINNSYSITHLLFADDILIFVEDDDVSIKNLQTVLMLFELASRLKINLLKSTISLVNISNDRASKVASILGFTQQFLPIN

Query:  YLGVPLGGKPISKVFWSQIIENIHKKLSSWKYNHITKGERLTLIRSSLESNPTYQLSIFKAPNQIYKDIDKIWRNFLWGSISNSNNPHLINWGICTLPKD
        YLGVPLGG P S+ FWSQ IE IHKKL+ WKY+ I+KG RLTL+++SL S PTYQLS FKAP  +YK+I+K WR+FLWG   +  N HLINW ICT PK+
Subjt:  YLGVPLGGKPISKVFWSQIIENIHKKLSSWKYNHITKGERLTLIRSSLESNPTYQLSIFKAPNQIYKDIDKIWRNFLWGSISNSNNPHLINWGICTLPKD

Query:  KGGLGITRMKASNFALLTKWLCCYHRELEALWKSIIDAKYSKTFTGGIPYFGKYSSSNAPWRSIIKGKDWFNSKIIWKINSGGSHSFWHSNWANSISLNQ
         GGLGI+++K +N ALL KWL  YH E  +LWK  IDAKY+K   G IP  G+ SS+N+PW +I K KDW+ SKI W  N G S SFWHS W N+I L+ 
Subjt:  KGGLGITRMKASNFALLTKWLCCYHRELEALWKSIIDAKYSKTFTGGIPYFGKYSSSNAPWRSIIKGKDWFNSKIIWKINSGGSHSFWHSNWANSISLNQ

Query:  KAPRLYALSSCKEATVKEVWDPGTNDWD
        + PRLYALS+ + ATVKE+WD G++DW+
Subjt:  KAPRLYALSSCKEATVKEVWDPGTNDWD

A0A5D3CA17 LINE-1 retrotransposable element ORF2 protein8.3e-11159.09Show/hide
Query:  MDYLSRLLNHLEKRQAIKGAKINNSYSITHLLFADDILIFVEDDDVSIKNLQTVLMLFELASRLKINLLKSTISLVNISNDRASKVASILGFTQQFLPIN
        MDYLSRLL+HLE + AIKG   NN  +I+HLLFADD+LIFVED++  + NLQ  L LFE AS L  N  KSTIS +NIS  R  ++AS  GF  +FLP+N
Subjt:  MDYLSRLLNHLEKRQAIKGAKINNSYSITHLLFADDILIFVEDDDVSIKNLQTVLMLFELASRLKINLLKSTISLVNISNDRASKVASILGFTQQFLPIN

Query:  YLGVPLGGKPISKVFWSQIIENIHKKLSSWKYNHITKGERLTLIRSSLESNPTYQLSIFKAPNQIYKDIDKIWRNFLWGSISNSNNPHLINWGICTLPKD
        YLGVPLGG P S+ FW Q IE IHKKL+ WKY+ I+KG RLTL+++SL S PTYQLS FKAP  +YK+I+K WR+FLWG   +  N HLINW ICT PK+
Subjt:  YLGVPLGGKPISKVFWSQIIENIHKKLSSWKYNHITKGERLTLIRSSLESNPTYQLSIFKAPNQIYKDIDKIWRNFLWGSISNSNNPHLINWGICTLPKD

Query:  KGGLGITRMKASNFALLTKWLCCYHRELEALWKSIIDAKYSKTFTGGIPYFGKYSSSNAPWRSIIKGKDWFNSKIIWKINSGGSHSFWHSNWANSISLNQ
         GGLGI+++K +N ALL KWL  YH E  +LWK  IDAKY+K   G IP  G+ SS+N+PW +I K KDW+ SKI W  N G S SFWHS W N+I L+ 
Subjt:  KGGLGITRMKASNFALLTKWLCCYHRELEALWKSIIDAKYSKTFTGGIPYFGKYSSSNAPWRSIIKGKDWFNSKIIWKINSGGSHSFWHSNWANSISLNQ

Query:  KAPRLYALSSCKEATVKEVWDPGTNDWDKR
        + PRLYALS+ + ATVKE+WD G++DW+ +
Subjt:  KAPRLYALSSCKEATVKEVWDPGTNDWDKR

SwissProt top hitse value%identityAlignment
O00370 LINE-1 retrotransposable element ORF2 protein7.2e-1123.05Show/hide
Query:  LSRLLNHLEKRQAIKGAKINNSYSITHLLFADDILIFVEDDDVSIKNLQTVLMLFELASRLKINLLKSTISLVNISNDRASKVASILGFTQQFLPINYLG
        L  L   + + + IKG ++     +   LFADD+++++E+  VS +NL  ++  F   S  KIN+ KS   L N +    S++   L FT     I YLG
Subjt:  LSRLLNHLEKRQAIKGAKINNSYSITHLLFADDILIFVEDDDVSIKNLQTVLMLFELASRLKINLLKSTISLVNISNDRASKVASILGFTQQFLPINYLG

Query:  VPL--GGKPISKVFWSQIIENIHKKLSSWKYNHITKGERLTLIRSSLESNPTYQLSI--FKAPNQIYKDIDKIWRNFLWGSISNSNNPHLINWGICTLPK
        + L    K + K  +  +++ I +  + WK    +   R+ +++ ++     Y+ +    K P   + +++K    F+W    N     +    I +   
Subjt:  VPL--GGKPISKVFWSQIIENIHKKLSSWKYNHITKGERLTLIRSSLESNPTYQLSI--FKAPNQIYKDIDKIWRNFLWGSISNSNNPHLINWGICTLPK

Query:  DKGGLGITRMKASNFALLTK--WLCCYHRELEALWKSIIDAKYSKTFTGGI-PYFGKYSSSNAPWRSIIKGKDWFNSKIIWK
          GG+ +   K    A +TK  W    +R+++         ++++T    I P+   Y   + P ++   GKD   +K  W+
Subjt:  DKGGLGITRMKASNFALLTK--WLCCYHRELEALWKSIIDAKYSKTFTGGI-PYFGKYSSSNAPWRSIIKGKDWFNSKIIWK

P08548 LINE-1 reverse transcriptase homolog2.5e-1126.18Show/hide
Query:  LEKRQAIKGAKINNSYSITHLLFADDILIFVEDDDVSIKNLQTVLMLFELASRLKINLLKSTISLVNISNDRASKVASILGFTQQFLPINYLGVPL--GG
        + + +AIKG  I  S  I   LFADD+++++E+   S   L  V+  +   S  KIN  KS   +   +N     V   + FT     + YLGV L    
Subjt:  LEKRQAIKGAKINNSYSITHLLFADDILIFVEDDDVSIKNLQTVLMLFELASRLKINLLKSTISLVNISNDRASKVASILGFTQQFLPINYLGVPL--GG

Query:  KPISKVFWSQIIENIHKKLSSWKYNHITKGERLTLIRSSLESNPTYQLSI--FKAPNQIYKDIDKIWRNFLWGSISNSNNPHLINWGICTLPKDKGGLGI
        K + K  +  + + I + ++ WK    +   R+ +++ S+     Y  +    KAP   +KD++KI  +F+W    N   P +    +    K+K G GI
Subjt:  KPISKVFWSQIIENIHKKLSSWKYNHITKGERLTLIRSSLESNPTYQLSI--FKAPNQIYKDIDKIWRNFLWGSISNSNNPHLINWGICTLPKDKGGLGI

Query:  T----RMKASNFALLTKWLCCYHRELEALWKSIIDAKYSKTFTGGIPYFGKYSSSNAPWRSIIKGKDWFNSKIIW
        T    R+   +  + T W    +RE++ +W  I + +         P    Y   + P ++I  GKD   +K  W
Subjt:  T----RMKASNFALLTKWLCCYHRELEALWKSIIDAKYSKTFTGGIPYFGKYSSSNAPWRSIIKGKDWFNSKIIW

P0C2F6 Putative ribonuclease H protein At1g657501.7e-2328.7Show/hide
Query:  VPLGGKPISKVFWSQIIENIHKKLSSWKYNHITKGERLTLIRSSLESNPTYQLSIFKAPNQIYKDIDKIWRNFLWGSISNSNNPHLINWGICTLPKDKGG
        +P+  K I+K  + +I+E +  ++S W+   ++   RLTL ++ L S P + +S    P  I   +D++ R FLWGS +     HL+ W     PK +GG
Subjt:  VPLGGKPISKVFWSQIIENIHKKLSSWKYNHITKGERLTLIRSSLESNPTYQLSIFKAPNQIYKDIDKIWRNFLWGSISNSNNPHLINWGICTLPKDKGG

Query:  LGITRMKASNFALLTKWLCCYHRELEALWKSIIDAKYSKTFTGGIPYFGKYSSSNAPWRSIIKG-KDWFNSKIIWKINSGGSHSFWHSNWANSISL----
        LG+   K+ N AL++K      +E  +LW  ++  KY         +     S ++ WRSI  G +D  +  + W    G    FW   W +   L    
Subjt:  LGITRMKASNFALLTKWLCCYHRELEALWKSIIDAKYSKTFTGGIPYFGKYSSSNAPWRSIIKG-KDWFNSKIIWKINSGGSHSFWHSNWANSISL----

Query:  NQKAPRLYALSSCKEATVKEVWDPGTNDWD
        N + P     + C     K++W PG   WD
Subjt:  NQKAPRLYALSSCKEATVKEVWDPGTNDWD

Arabidopsis top hitse value%identityAlignment
AT3G24255.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein1.3e-1826.17Show/hide
Query:  NDRASKVASILGFTQQFLPINYLGVPLGGKPISKVFWSQIIENIHKKLSSWKYNHITKGERLTLIRSSLESNPTYQLSIFKAPNQIYKDIDKIWRNFLWG
        ND+A  + S   F    LP+ YLG+PL  K ++   +  ++E I  ++  W   H++   RL LI S + S   + +S F+ P+   K+ID I  +FLW 
Subjt:  NDRASKVASILGFTQQFLPINYLGVPLGGKPISKVFWSQIIENIHKKLSSWKYNHITKGERLTLIRSSLESNPTYQLSIFKAPNQIYKDIDKIWRNFLWG

Query:  SISNSNNPHLINWGICTLPKDKGGLGITRMKASNFALLTKWLCCYHRELEALWKSIIDAKYSKTFTGGIPYFGKYSSSNAPWRSIIKGKDWFNSKIIWKI
            +     + W     PKD+GGLGI  +K +N                + W                   G  +  +  W+ I+K +   +  +   I
Subjt:  SISNSNNPHLINWGICTLPKDKGGLGITRMKASNFALLTKWLCCYHRELEALWKSIIDAKYSKTFTGGIPYFGKYSSSNAPWRSIIKGKDWFNSKIIWKI

Query:  NSGGSHSFWHSNWA
        ++G + SFW  NW+
Subjt:  NSGGSHSFWHSNWA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTATCTTAGCAGACTACTAAATCACCTAGAAAAGAGGCAAGCTATCAAAGGAGCTAAAATAAACAACAGCTACAGTATAACACACCTCCTCTTCGCAGATGACAT
TCTGATATTCGTGGAGGATGATGATGTTTCAATCAAAAACCTTCAAACAGTTCTCATGCTATTTGAATTGGCATCCAGATTGAAGATAAACCTTCTCAAATCAACTATAA
GTCTGGTAAACATTTCAAATGATAGAGCTTCCAAAGTTGCAAGTATACTTGGCTTTACTCAACAATTCCTCCCCATCAATTACTTGGGAGTTCCCTTAGGAGGCAAACCT
ATCTCAAAAGTTTTCTGGTCTCAAATTATTGAAAACATCCATAAAAAATTGAGCAGTTGGAAATACAACCATATCACCAAAGGAGAAAGACTGACCTTAATCAGATCATC
TCTCGAAAGTAATCCAACTTATCAGCTTTCGATCTTCAAAGCTCCAAATCAGATCTATAAAGACATTGACAAAATATGGAGGAATTTCCTCTGGGGAAGCATCTCAAATT
CAAATAACCCTCACCTGATTAACTGGGGTATTTGCACATTGCCAAAAGACAAAGGTGGCCTGGGTATCACAAGGATGAAAGCCTCAAACTTTGCCCTCTTAACAAAGTGG
CTTTGTTGCTACCATAGGGAACTAGAAGCTCTTTGGAAGTCGATAATCGATGCCAAATACAGTAAAACATTCACTGGAGGTATCCCATATTTTGGAAAGTACTCAAGCTC
AAATGCTCCTTGGCGCTCCATCATAAAAGGAAAAGACTGGTTCAATTCAAAAATTATCTGGAAAATAAACAGTGGAGGCTCTCATTCTTTTTGGCACAGCAACTGGGCAA
ACAGTATATCTCTAAACCAAAAAGCCCCAAGACTTTACGCATTATCAAGCTGTAAAGAAGCTACTGTCAAAGAAGTTTGGGACCCTGGGACAAACGATTGGGACAAACGA
TTGGAACTTCAAACCAAGAAGGCCTCTCAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGATTATCTTAGCAGACTACTAAATCACCTAGAAAAGAGGCAAGCTATCAAAGGAGCTAAAATAAACAACAGCTACAGTATAACACACCTCCTCTTCGCAGATGACAT
TCTGATATTCGTGGAGGATGATGATGTTTCAATCAAAAACCTTCAAACAGTTCTCATGCTATTTGAATTGGCATCCAGATTGAAGATAAACCTTCTCAAATCAACTATAA
GTCTGGTAAACATTTCAAATGATAGAGCTTCCAAAGTTGCAAGTATACTTGGCTTTACTCAACAATTCCTCCCCATCAATTACTTGGGAGTTCCCTTAGGAGGCAAACCT
ATCTCAAAAGTTTTCTGGTCTCAAATTATTGAAAACATCCATAAAAAATTGAGCAGTTGGAAATACAACCATATCACCAAAGGAGAAAGACTGACCTTAATCAGATCATC
TCTCGAAAGTAATCCAACTTATCAGCTTTCGATCTTCAAAGCTCCAAATCAGATCTATAAAGACATTGACAAAATATGGAGGAATTTCCTCTGGGGAAGCATCTCAAATT
CAAATAACCCTCACCTGATTAACTGGGGTATTTGCACATTGCCAAAAGACAAAGGTGGCCTGGGTATCACAAGGATGAAAGCCTCAAACTTTGCCCTCTTAACAAAGTGG
CTTTGTTGCTACCATAGGGAACTAGAAGCTCTTTGGAAGTCGATAATCGATGCCAAATACAGTAAAACATTCACTGGAGGTATCCCATATTTTGGAAAGTACTCAAGCTC
AAATGCTCCTTGGCGCTCCATCATAAAAGGAAAAGACTGGTTCAATTCAAAAATTATCTGGAAAATAAACAGTGGAGGCTCTCATTCTTTTTGGCACAGCAACTGGGCAA
ACAGTATATCTCTAAACCAAAAAGCCCCAAGACTTTACGCATTATCAAGCTGTAAAGAAGCTACTGTCAAAGAAGTTTGGGACCCTGGGACAAACGATTGGGACAAACGA
TTGGAACTTCAAACCAAGAAGGCCTCTCAATGA
Protein sequenceShow/hide protein sequence
MDYLSRLLNHLEKRQAIKGAKINNSYSITHLLFADDILIFVEDDDVSIKNLQTVLMLFELASRLKINLLKSTISLVNISNDRASKVASILGFTQQFLPINYLGVPLGGKP
ISKVFWSQIIENIHKKLSSWKYNHITKGERLTLIRSSLESNPTYQLSIFKAPNQIYKDIDKIWRNFLWGSISNSNNPHLINWGICTLPKDKGGLGITRMKASNFALLTKW
LCCYHRELEALWKSIIDAKYSKTFTGGIPYFGKYSSSNAPWRSIIKGKDWFNSKIIWKINSGGSHSFWHSNWANSISLNQKAPRLYALSSCKEATVKEVWDPGTNDWDKR
LELQTKKASQ