CuGenDBv2

Gene ID	IVF0016200
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Pol protein
Genome location	chr04:6404983..6405228
RNA-Seq Expression	IVF0016200
Synteny	IVF0016200
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0045469.1 pol protein [Cucumis melo var. makuwa]

5.01e-42

98.67

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Query:  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEI
        MGPELVQSTNEAIQKIRSR+HTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEI
Subjt:  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEI

KAA0051723.1 pol protein [Cucumis melo var. makuwa]

1.38e-42

97.33

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Query:  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEI
        MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFE+GDKVFLKVAPM+GVLRFERRGKLSPRFVGPFEI
Subjt:  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEI

KAA0055884.1 pol protein [Cucumis melo var. makuwa]

3.75e-42

100

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Query:  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEI
        MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEI
Subjt:  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEI

KAA0056505.1 pol protein [Cucumis melo var. makuwa]

3.75e-42

100

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Query:  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEI
        MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEI
Subjt:  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEI

KAA0065715.1 pol protein [Cucumis melo var. makuwa]

7.10e-42

97.33

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Query:  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEI
        MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFE+GDKVFLKVAPM+GVLRFERRGKLSPRFVGPFEI
Subjt:  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEI

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SZD6 Pol protein

8.2e-33

100

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Query:  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEI
        MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEI
Subjt:  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEI

A0A5A7U7V9 Reverse transcriptase

8.2e-33

100

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Query:  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEI
        MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEI
Subjt:  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEI

A0A5A7UL25 Pol protein

8.2e-33

100

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Query:  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEI
        MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEI
Subjt:  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEI

A0A5A7USM8 Pol protein

8.2e-33

100

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Query:  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEI
        MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEI
Subjt:  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEI

A0A5A7VDP3 Pol protein

8.2e-33

100

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Query:  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEI
        MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEI
Subjt:  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEI

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGGTCCTGAGTTAGTTCAGTCTACTAACGAAGCAATTCAGAAGATTAGATCACGCATGCATACCGCTCAGAGTAGACAGAAGAGTTATGCAGATGTGAGGCGGAAGGA
CCTTGAGTTTGAGATAGGGGATAAGGTGTTCTTAAAGGTAGCACCTATGAAAGGTGTCTTGCGTTTTGAAAGGAGGGGAAAGTTGAGTCCCCGTTTTGTTGGGCCATTTG
AGATCTGGAGCGGATTGGCCCTGTAG

mRNA sequence

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Protein sequence

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MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEIWSGLAL

IVF0016200 (gene) of Melon (IVF77) v1 genome