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IVF0016226 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0016226
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionDNA/RNA polymerases superfamily protein
Genome locationchr01:21715089..21715505
RNA-Seq ExpressionIVF0016226
SyntenyIVF0016226
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042193.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]4.00e-7583.33Show/hide
Query:  MDLMNRVFHSYLDQFVIVFIDDILAYSGSKEKHAEHLRIVLQTLRDRELYAKFSKCDFWLDRVVFLGHVVSVEGICVDPQKTEVVDKWKRPTSVTEIRSF
        M+LM++VFH +LDQFVIVFIDDIL YSGSKEKH EHLRI LQTLR RELYAKFSKC+FWLD +VFL HVVS EGICVDP+KT+ VDKW+RPT +T+IRSF
Subjt:  MDLMNRVFHSYLDQFVIVFIDDILAYSGSKEKHAEHLRIVLQTLRDRELYAKFSKCDFWLDRVVFLGHVVSVEGICVDPQKTEVVDKWKRPTSVTEIRSF

Query:  LGLAGYYRRFVEGFSKLALPLTNLTRKNVKFEWTDACE
        LGL GYY RFVEGFSKLALPLTNLTRKNVKFEWTDACE
Subjt:  LGLAGYYRRFVEGFSKLALPLTNLTRKNVKFEWTDACE

KAA0047618.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]4.68e-7886.23Show/hide
Query:  MDLMNRVFHSYLDQFVIVFIDDILAYSGSKEKHAEHLRIVLQTLRDRELYAKFSKCDFWLDRVVFLGHVVSVEGICVDPQKTEVVDKWKRPTSVTEIRSF
        MDLMN VFH YLDQFVI+FIDDIL YS SKEKHAEHLRIV QTLRDRELYAKFSKC+FWLDRV++LGHVVSVEGICVDPQK E V+KW+RPTS+ EIRSF
Subjt:  MDLMNRVFHSYLDQFVIVFIDDILAYSGSKEKHAEHLRIVLQTLRDRELYAKFSKCDFWLDRVVFLGHVVSVEGICVDPQKTEVVDKWKRPTSVTEIRSF

Query:  LGLAGYYRRFVEGFSKLALPLTNLTRKNVKFEWTDACE
        L LA YYRRFVEGFSKLAL LTNLT+KNVKFEWTDACE
Subjt:  LGLAGYYRRFVEGFSKLALPLTNLTRKNVKFEWTDACE

TYK08274.1 retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa]2.73e-7786.23Show/hide
Query:  MDLMNRVFHSYLDQFVIVFIDDILAYSGSKEKHAEHLRIVLQTLRDRELYAKFSKCDFWLDRVVFLGHVVSVEGICVDPQKTEVVDKWKRPTSVTEIRSF
        MDLMN VFH YLDQFVI+FIDDIL YS SKEKHAEHLRIV QTLRDRELYAKFSKC+FWLDRV++LGHVVSVEGICVDPQK E V+KW+RPTS+ EIRSF
Subjt:  MDLMNRVFHSYLDQFVIVFIDDILAYSGSKEKHAEHLRIVLQTLRDRELYAKFSKCDFWLDRVVFLGHVVSVEGICVDPQKTEVVDKWKRPTSVTEIRSF

Query:  LGLAGYYRRFVEGFSKLALPLTNLTRKNVKFEWTDACE
        L LA YYRRFVEGFSKLAL LTNLT+KNVKFEWTDACE
Subjt:  LGLAGYYRRFVEGFSKLALPLTNLTRKNVKFEWTDACE

TYK13961.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.40e-7285.4Show/hide
Query:  MDLMNRVFHSYLDQFVIVFIDDILAYSGSKEKHAEHLRIVLQTLRDRELYAKFSKCDFWLDRVVFLGHVVSVEGICVDPQKTEVVDKWKRPTSVTEIRSF
        MDLMNRVFHSYLDQFVIVFIDDIL YS SKEKH EHLRIVLQTL DRELYAKFSKC+FWLDRVV LGH+VS+EGICVDP+K E  DK +RPTS+TEI+SF
Subjt:  MDLMNRVFHSYLDQFVIVFIDDILAYSGSKEKHAEHLRIVLQTLRDRELYAKFSKCDFWLDRVVFLGHVVSVEGICVDPQKTEVVDKWKRPTSVTEIRSF

Query:  LGLAGYYRRFVEGFSKLALPLTNLTRKNVKFEWTDAC
        LGL+ YYR+ VEGFSKLALPLTNLTRKNVKFEWTDAC
Subjt:  LGLAGYYRRFVEGFSKLALPLTNLTRKNVKFEWTDAC

TYK26763.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]5.64e-7583.33Show/hide
Query:  MDLMNRVFHSYLDQFVIVFIDDILAYSGSKEKHAEHLRIVLQTLRDRELYAKFSKCDFWLDRVVFLGHVVSVEGICVDPQKTEVVDKWKRPTSVTEIRSF
        M+LM++VFH +LDQFVIVFIDDIL YSGSKEKH EHLRI LQTLR RELYAKFSKC+FWLD +VFL HVVS EGICVDP+KT+ VDKW+RPT +T+IRSF
Subjt:  MDLMNRVFHSYLDQFVIVFIDDILAYSGSKEKHAEHLRIVLQTLRDRELYAKFSKCDFWLDRVVFLGHVVSVEGICVDPQKTEVVDKWKRPTSVTEIRSF

Query:  LGLAGYYRRFVEGFSKLALPLTNLTRKNVKFEWTDACE
        LGL GYY RFVEGFSKLALPLTNLTRKNVKFEWTDACE
Subjt:  LGLAGYYRRFVEGFSKLALPLTNLTRKNVKFEWTDACE

TrEMBL top hitse value%identityAlignment
A0A5A7T0V4 Putative DNA/RNA polymerases superfamily protein8.4e-6285.4Show/hide
Query:  MDLMNRVFHSYLDQFVIVFIDDILAYSGSKEKHAEHLRIVLQTLRDRELYAKFSKCDFWLDRVVFLGHVVSVEGICVDPQKTEVVDKWKRPTSVTEIRSF
        MDLMNRVFHSYLDQFVIVFIDDIL YS SKEKH EHLRIVLQTL DRELYAKFSKC+FWLDRVV LGH+VS+EGICVDP+K E  DK +RPTS+TEI+SF
Subjt:  MDLMNRVFHSYLDQFVIVFIDDILAYSGSKEKHAEHLRIVLQTLRDRELYAKFSKCDFWLDRVVFLGHVVSVEGICVDPQKTEVVDKWKRPTSVTEIRSF

Query:  LGLAGYYRRFVEGFSKLALPLTNLTRKNVKFEWTDAC
        LGL+ YYR+ VEGFSKLALPLTNLTRKNVKFEWTDAC
Subjt:  LGLAGYYRRFVEGFSKLALPLTNLTRKNVKFEWTDAC

A0A5A7TG44 DNA/RNA polymerases superfamily protein1.4e-6183.33Show/hide
Query:  MDLMNRVFHSYLDQFVIVFIDDILAYSGSKEKHAEHLRIVLQTLRDRELYAKFSKCDFWLDRVVFLGHVVSVEGICVDPQKTEVVDKWKRPTSVTEIRSF
        M+LM++VFH +LDQFVIVFIDDIL YSGSKEKH EHLRI LQTLR RELYAKFSKC+FWLD +VFL HVVS EGICVDP+KT+ VDKW+RPT +T+IRSF
Subjt:  MDLMNRVFHSYLDQFVIVFIDDILAYSGSKEKHAEHLRIVLQTLRDRELYAKFSKCDFWLDRVVFLGHVVSVEGICVDPQKTEVVDKWKRPTSVTEIRSF

Query:  LGLAGYYRRFVEGFSKLALPLTNLTRKNVKFEWTDACE
        LGL GYY RFVEGFSKLALPLTNLTRKNVKFEWTDACE
Subjt:  LGLAGYYRRFVEGFSKLALPLTNLTRKNVKFEWTDACE

A0A5A7TXH8 DNA/RNA polymerases superfamily protein9.0e-6486.23Show/hide
Query:  MDLMNRVFHSYLDQFVIVFIDDILAYSGSKEKHAEHLRIVLQTLRDRELYAKFSKCDFWLDRVVFLGHVVSVEGICVDPQKTEVVDKWKRPTSVTEIRSF
        MDLMN VFH YLDQFVI+FIDDIL YS SKEKHAEHLRIV QTLRDRELYAKFSKC+FWLDRV++LGHVVSVEGICVDPQK E V+KW+RPTS+ EIRSF
Subjt:  MDLMNRVFHSYLDQFVIVFIDDILAYSGSKEKHAEHLRIVLQTLRDRELYAKFSKCDFWLDRVVFLGHVVSVEGICVDPQKTEVVDKWKRPTSVTEIRSF

Query:  LGLAGYYRRFVEGFSKLALPLTNLTRKNVKFEWTDACE
        L LA YYRRFVEGFSKLAL LTNLT+KNVKFEWTDACE
Subjt:  LGLAGYYRRFVEGFSKLALPLTNLTRKNVKFEWTDACE

A0A5D3CAQ2 Retrotransposon protein, putative, Ty3-gypsy subclass9.0e-6486.23Show/hide
Query:  MDLMNRVFHSYLDQFVIVFIDDILAYSGSKEKHAEHLRIVLQTLRDRELYAKFSKCDFWLDRVVFLGHVVSVEGICVDPQKTEVVDKWKRPTSVTEIRSF
        MDLMN VFH YLDQFVI+FIDDIL YS SKEKHAEHLRIV QTLRDRELYAKFSKC+FWLDRV++LGHVVSVEGICVDPQK E V+KW+RPTS+ EIRSF
Subjt:  MDLMNRVFHSYLDQFVIVFIDDILAYSGSKEKHAEHLRIVLQTLRDRELYAKFSKCDFWLDRVVFLGHVVSVEGICVDPQKTEVVDKWKRPTSVTEIRSF

Query:  LGLAGYYRRFVEGFSKLALPLTNLTRKNVKFEWTDACE
        L LA YYRRFVEGFSKLAL LTNLT+KNVKFEWTDACE
Subjt:  LGLAGYYRRFVEGFSKLALPLTNLTRKNVKFEWTDACE

A0A5D3CQ91 Putative DNA/RNA polymerases superfamily protein8.4e-6285.4Show/hide
Query:  MDLMNRVFHSYLDQFVIVFIDDILAYSGSKEKHAEHLRIVLQTLRDRELYAKFSKCDFWLDRVVFLGHVVSVEGICVDPQKTEVVDKWKRPTSVTEIRSF
        MDLMNRVFHSYLDQFVIVFIDDIL YS SKEKH EHLRIVLQTL DRELYAKFSKC+FWLDRVV LGH+VS+EGICVDP+K E  DK +RPTS+TEI+SF
Subjt:  MDLMNRVFHSYLDQFVIVFIDDILAYSGSKEKHAEHLRIVLQTLRDRELYAKFSKCDFWLDRVVFLGHVVSVEGICVDPQKTEVVDKWKRPTSVTEIRSF

Query:  LGLAGYYRRFVEGFSKLALPLTNLTRKNVKFEWTDAC
        LGL+ YYR+ VEGFSKLALPLTNLTRKNVKFEWTDAC
Subjt:  LGLAGYYRRFVEGFSKLALPLTNLTRKNVKFEWTDAC

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.61.8e-2437.12Show/hide
Query:  MNRVFHSYLDQFVIVFIDDILAYSGSKEKHAEHLRIVLQTLRDRELYAKFSKCDFWLDRVVFLGHVVSVEGICVDPQKTEVVDKWKRPTSVTEIRSFLGL
        MN +    L++  +V++DDI+ +S S ++H + L +V + L    L  +  KC+F      FLGHV++ +GI  +P+K E + K+  PT   EI++FLGL
Subjt:  MNRVFHSYLDQFVIVFIDDILAYSGSKEKHAEHLRIVLQTLRDRELYAKFSKCDFWLDRVVFLGHVVSVEGICVDPQKTEVVDKWKRPTSVTEIRSFLGL

Query:  AGYYRRFVEGFSKLALPLTNLTRKNVKFEWTD
         GYYR+F+  F+ +A P+T   +KN+K + T+
Subjt:  AGYYRRFVEGFSKLALPLTNLTRKNVKFEWTD

P0CT34 Transposon Tf2-1 polyprotein2.0e-2034.35Show/hide
Query:  MNRVFHSYLDQFVIVFIDDILAYSGSKEKHAEHLRIVLQTLRDRELYAKFSKCDFWLDRVVFLGHVVSVEGICVDPQKTEVVDKWKRPTSVTEIRSFLGL
        +N +     +  V+ ++DDIL +S S+ +H +H++ VLQ L++  L    +KC+F   +V F+G+ +S +G     +  + V +WK+P +  E+R FLG 
Subjt:  MNRVFHSYLDQFVIVFIDDILAYSGSKEKHAEHLRIVLQTLRDRELYAKFSKCDFWLDRVVFLGHVVSVEGICVDPQKTEVVDKWKRPTSVTEIRSFLGL

Query:  AGYYRRFVEGFSKLALPLTNLTRKNVKFEWT
          Y R+F+   S+L  PL NL +K+V+++WT
Subjt:  AGYYRRFVEGFSKLALPLTNLTRKNVKFEWT

P0CT41 Transposon Tf2-12 polyprotein2.0e-2034.35Show/hide
Query:  MNRVFHSYLDQFVIVFIDDILAYSGSKEKHAEHLRIVLQTLRDRELYAKFSKCDFWLDRVVFLGHVVSVEGICVDPQKTEVVDKWKRPTSVTEIRSFLGL
        +N +     +  V+ ++DDIL +S S+ +H +H++ VLQ L++  L    +KC+F   +V F+G+ +S +G     +  + V +WK+P +  E+R FLG 
Subjt:  MNRVFHSYLDQFVIVFIDDILAYSGSKEKHAEHLRIVLQTLRDRELYAKFSKCDFWLDRVVFLGHVVSVEGICVDPQKTEVVDKWKRPTSVTEIRSFLGL

Query:  AGYYRRFVEGFSKLALPLTNLTRKNVKFEWT
          Y R+F+   S+L  PL NL +K+V+++WT
Subjt:  AGYYRRFVEGFSKLALPLTNLTRKNVKFEWT

P20825 Retrovirus-related Pol polyprotein from transposon 2974.1e-2134.88Show/hide
Query:  MNRVFHSYLDQFVIVFIDDILAYSGSKEKHAEHLRIVLQTLRDRELYAKFSKCDFWLDRVVFLGHVVSVEGICVDPQKTEVVDKWKRPTSVTEIRSFLGL
        MN +    L++  +V++DDI+ +S S  +H   +++V   L D  L  +  KC+F      FLGH+V+ +GI  +P K + +  +  PT   EIR+FLGL
Subjt:  MNRVFHSYLDQFVIVFIDDILAYSGSKEKHAEHLRIVLQTLRDRELYAKFSKCDFWLDRVVFLGHVVSVEGICVDPQKTEVVDKWKRPTSVTEIRSFLGL

Query:  AGYYRRFVEGFSKLALPLTNLTRKNVKFE
         GYYR+F+  ++ +A P+T+  +K  K +
Subjt:  AGYYRRFVEGFSKLALPLTNLTRKNVKFE

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus1.1e-2137.1Show/hide
Query:  LMNRVFHSYLDQFVIVFIDDILAYSGSKEKHAEHLRIVLQTLRDRELYAKFSKCDFWLDRVVFLGHVVSVEGICVDPQKTEVVDKWKRPTSVTEIRSFLG
        +++ +   ++ +   V+IDDI+ +S   + H ++LR+VL +L    L     K  F   +V FLG++V+ +GI  DP+K   + +   PTSV E++ FLG
Subjt:  LMNRVFHSYLDQFVIVFIDDILAYSGSKEKHAEHLRIVLQTLRDRELYAKFSKCDFWLDRVVFLGHVVSVEGICVDPQKTEVVDKWKRPTSVTEIRSFLG

Query:  LAGYYRRFVEGFSKLALPLTNLTR
        +  YYR+F++ ++K+A PLTNLTR
Subjt:  LAGYYRRFVEGFSKLALPLTNLTR

Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein4.2e-2144.12Show/hide
Query:  HLRIVLQTLRDRELYAKFSKCDFWLDRVVFLG--HVVSVEGICVDPQKTEVVDKWKRPTSVTEIRSFLGLAGYYRRFVEGFSKLALPLTNLTRKNVKFEW
        HL +VLQ     + YA   KC F   ++ +LG  H++S EG+  DP K E +  W  P + TE+R FLGL GYYRRFV+ + K+  PLT L +KN   +W
Subjt:  HLRIVLQTLRDRELYAKFSKCDFWLDRVVFLG--HVVSVEGICVDPQKTEVVDKWKRPTSVTEIRSFLGLAGYYRRFVEGFSKLALPLTNLTRKNVKFEW

Query:  TD
        T+
Subjt:  TD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACTTGATGAATCGGGTGTTTCATTCATACCTGGATCAGTTTGTTATTGTGTTCATAGACGATATATTGGCTTATTCAGGGAGTAAAGAAAAGCATGCTGAACACCT
TAGAATAGTATTGCAGACACTGCGGGATCGAGAGTTGTATGCTAAATTCAGTAAGTGCGATTTCTGGCTGGATCGGGTAGTATTTTTGGGTCATGTGGTTTCAGTGGAAG
GCATTTGTGTTGATCCTCAGAAAACTGAAGTAGTAGACAAGTGGAAAAGACCCACCTCTGTCACTGAGATCCGAAGTTTTCTTGGTTTAGCGGGGTATTATCGTCGATTT
GTGGAAGGTTTTTCTAAATTGGCACTTCCATTAACCAACCTAACCAGGAAAAATGTAAAGTTTGAATGGACAGATGCTTGTGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGACTTGATGAATCGGGTGTTTCATTCATACCTGGATCAGTTTGTTATTGTGTTCATAGACGATATATTGGCTTATTCAGGGAGTAAAGAAAAGCATGCTGAACACCT
TAGAATAGTATTGCAGACACTGCGGGATCGAGAGTTGTATGCTAAATTCAGTAAGTGCGATTTCTGGCTGGATCGGGTAGTATTTTTGGGTCATGTGGTTTCAGTGGAAG
GCATTTGTGTTGATCCTCAGAAAACTGAAGTAGTAGACAAGTGGAAAAGACCCACCTCTGTCACTGAGATCCGAAGTTTTCTTGGTTTAGCGGGGTATTATCGTCGATTT
GTGGAAGGTTTTTCTAAATTGGCACTTCCATTAACCAACCTAACCAGGAAAAATGTAAAGTTTGAATGGACAGATGCTTGTGAATGA
Protein sequenceShow/hide protein sequence
MDLMNRVFHSYLDQFVIVFIDDILAYSGSKEKHAEHLRIVLQTLRDRELYAKFSKCDFWLDRVVFLGHVVSVEGICVDPQKTEVVDKWKRPTSVTEIRSFLGLAGYYRRF
VEGFSKLALPLTNLTRKNVKFEWTDACE