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IVF0016249 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0016249
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr09:5720112..5720276
RNA-Seq ExpressionIVF0016249
SyntenyIVF0016249
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036983.1 retrotransposon protein [Cucumis melo var. makuwa]1.18e-1874.55Show/hide
Query:  MTNCDDIDDVD-GDFAYATTTALKDIQYIETTNESSQCRNELAEVMFTEWKLRNA
        MTNCDDIDDVD GD AY TTTA++DIQYIET N+ SQ R ELAE MF +W+LRNA
Subjt:  MTNCDDIDDVD-GDFAYATTTALKDIQYIETTNESSQCRNELAEVMFTEWKLRNA

KAA0054051.1 retrotransposon protein [Cucumis melo var. makuwa]2.90e-1978.18Show/hide
Query:  MTNCDDIDDVD-GDFAYATTTALKDIQYIETTNESSQCRNELAEVMFTEWKLRNA
        MT CDDIDDVD GD AYATTTA +DI YIETTNE SQ R+ELAE MFT+W+LRNA
Subjt:  MTNCDDIDDVD-GDFAYATTTALKDIQYIETTNESSQCRNELAEVMFTEWKLRNA

KAA0062284.1 retrotransposon protein [Cucumis melo var. makuwa]6.57e-1876.36Show/hide
Query:  MTNCDDIDDVD-GDFAYATTTALKDIQYIETTNESSQCRNELAEVMFTEWKLRNA
        MT CDDIDD D GD  YATTTA +DIQYIETTNE SQ R++LAE MFTEW+LRNA
Subjt:  MTNCDDIDDVD-GDFAYATTTALKDIQYIETTNESSQCRNELAEVMFTEWKLRNA

TYJ97711.1 retrotransposon protein [Cucumis melo var. makuwa]1.39e-1772.73Show/hide
Query:  MTNCDDIDDV-DGDFAYATTTALKDIQYIETTNESSQCRNELAEVMFTEWKLRNA
        MTNCDDID+V + D AYATTTA +DIQYI+TT E S  R+ELAE MFTEW+LRNA
Subjt:  MTNCDDIDDV-DGDFAYATTTALKDIQYIETTNESSQCRNELAEVMFTEWKLRNA

TYK11987.1 retrotransposon protein [Cucumis melo var. makuwa]9.33e-1874.55Show/hide
Query:  MTNCDDIDDVD-GDFAYATTTALKDIQYIETTNESSQCRNELAEVMFTEWKLRNA
        MT C+D+DD D GD  YATTTA +DIQYIETTNE SQ RN+LAE MFTEW+LRNA
Subjt:  MTNCDDIDDVD-GDFAYATTTALKDIQYIETTNESSQCRNELAEVMFTEWKLRNA

TrEMBL top hitse value%identityAlignment
A0A5A7TKK3 Retrotransposon protein8.2e-1374.55Show/hide
Query:  MTNCDDIDDVD-GDFAYATTTALKDIQYIETTNESSQCRNELAEVMFTEWKLRNA
        MT CDD+DD D GD  YATTTAL+DI+YIETTNE SQ R++LAE+MFTEW+LRNA
Subjt:  MTNCDDIDDVD-GDFAYATTTALKDIQYIETTNESSQCRNELAEVMFTEWKLRNA

A0A5A7V4Q8 Retrotransposon protein2.4e-1276.36Show/hide
Query:  MTNCDDIDDVD-GDFAYATTTALKDIQYIETTNESSQCRNELAEVMFTEWKLRNA
        MT CDDIDD D GD  YATTTA +DIQYIETTNE SQ R++LAE MFTEW+LRNA
Subjt:  MTNCDDIDDVD-GDFAYATTTALKDIQYIETTNESSQCRNELAEVMFTEWKLRNA

A0A5D3BDZ0 Retrotransposon protein6.3e-1378.18Show/hide
Query:  MTNCDDIDDVD-GDFAYATTTALKDIQYIETTNESSQCRNELAEVMFTEWKLRNA
        MT CDDIDDVD GD AYATTTA +DI YIETTNE SQ R+ELAE MFT+W+LRNA
Subjt:  MTNCDDIDDVD-GDFAYATTTALKDIQYIETTNESSQCRNELAEVMFTEWKLRNA

A0A5D3BUL1 Retrotransposon protein8.2e-1374.55Show/hide
Query:  MTNCDDIDDVD-GDFAYATTTALKDIQYIETTNESSQCRNELAEVMFTEWKLRNA
        MT CDD+DD D GD  YATTTAL+DI+YIETTNE SQ R++LAE+MFTEW+LRNA
Subjt:  MTNCDDIDDVD-GDFAYATTTALKDIQYIETTNESSQCRNELAEVMFTEWKLRNA

A0A5D3DCC0 Retrotransposon protein1.8e-1274.55Show/hide
Query:  MTNCDDIDDVD-GDFAYATTTALKDIQYIETTNESSQCRNELAEVMFTEWKLRNA
        MTNCDDIDDVD GD AY TTTA++DIQYIET N+ SQ R ELAE MF +W+LRNA
Subjt:  MTNCDDIDDVD-GDFAYATTTALKDIQYIETTNESSQCRNELAEVMFTEWKLRNA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAAATTGCGACGACATTGACGACGTGGACGGGGACTTCGCATATGCCACGACCACCGCTTTAAAAGACATTCAGTATATTGAGACCACAAATGAGTCGTCTCAGTG
TCGCAACGAATTAGCTGAAGTGATGTTCACAGAATGGAAGTTGCGTAACGCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGACAAATTGCGACGACATTGACGACGTGGACGGGGACTTCGCATATGCCACGACCACCGCTTTAAAAGACATTCAGTATATTGAGACCACAAATGAGTCGTCTCAGTG
TCGCAACGAATTAGCTGAAGTGATGTTCACAGAATGGAAGTTGCGTAACGCTTAG
Protein sequenceShow/hide protein sequence
MTNCDDIDDVDGDFAYATTTALKDIQYIETTNESSQCRNELAEVMFTEWKLRNA