CuGenDBv2

Gene ID	IVF0016277
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Ribonuclease H
Genome location	chr07:11746327..11746605
RNA-Seq Expression	IVF0016277
Synteny	IVF0016277
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006310 - DNA recombination (biological process) GO:0015074 - DNA integration (biological process) GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process) GO:0005634 - nucleus (cellular component) GO:0030430 - host cell cytoplasm (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003887 - DNA-directed DNA polymerase activity (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domains	IPR036397 - Ribonuclease H superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0033219.1 Pol polyprotein [Cucumis melo var. makuwa]

1.54e-47

86.96

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Query:  MFVAYRDWHEMLPFALYGYRISVRTSTGATAFSLVYGFETILPIEVEVLSLGVIQEVELDEEKWAQVRYEQLNFIEERRLTALCRGQLYQKK
        M V YRDWHEMLPFAL+GYRISVRTSTG+T FSLVYGFE +LP+EVEV SL VIQE+ELDE KWAQVRYEQLNFIEERRLTALCRGQLYQKK
Subjt:  MFVAYRDWHEMLPFALYGYRISVRTSTGATAFSLVYGFETILPIEVEVLSLGVIQEVELDEEKWAQVRYEQLNFIEERRLTALCRGQLYQKK

KAA0046610.1 Pol polyprotein [Cucumis melo var. makuwa]

2.12e-46

85.39

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Query:  MFVAYRDWHEMLPFALYGYRISVRTSTGATAFSLVYGFETILPIEVEVLSLGVIQEVELDEEKWAQVRYEQLNFIEERRLTALCRGQLY
        M V YRDWHEMLPFAL+GYRISVRTSTG+T FSLVYGFE +LP+EVEV SL VIQE++LDE KWAQVRYEQLNFIEERRLTALCRGQLY
Subjt:  MFVAYRDWHEMLPFALYGYRISVRTSTGATAFSLVYGFETILPIEVEVLSLGVIQEVELDEEKWAQVRYEQLNFIEERRLTALCRGQLY

KAA0053387.1 Pol polyprotein [Cucumis melo var. makuwa]

7.49e-54

97.83

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Query:  MFVAYRDWHEMLPFALYGYRISVRTSTGATAFSLVYGFETILPIEVEVLSLGVIQEVELDEEKWAQVRYEQLNFIEERRLTALCRGQLYQKK
        MFVAYR WHEMLPFALYGYRISVRTSTGATAFS VYGFETILPIEVEVLSLGVIQEVELDEEKWAQVRYEQLNFIEERRLTALCRGQLYQKK
Subjt:  MFVAYRDWHEMLPFALYGYRISVRTSTGATAFSLVYGFETILPIEVEVLSLGVIQEVELDEEKWAQVRYEQLNFIEERRLTALCRGQLYQKK

KAA0060778.1 Pol polyprotein [Cucumis melo var. makuwa]

1.74e-46

83.7

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Query:  MFVAYRDWHEMLPFALYGYRISVRTSTGATAFSLVYGFETILPIEVEVLSLGVIQEVELDEEKWAQVRYEQLNFIEERRLTALCRGQLYQKK
        M V YRDWHEMLPFAL+GYRISVRTSTG+T  SLVYGFE +LP+EVEV SL VIQEVELDE KWAQVRY+QLNFIEER LTALC+GQLYQKK
Subjt:  MFVAYRDWHEMLPFALYGYRISVRTSTGATAFSLVYGFETILPIEVEVLSLGVIQEVELDEEKWAQVRYEQLNFIEERRLTALCRGQLYQKK

TYK15866.1 Pol polyprotein [Cucumis melo var. makuwa]

1.90e-56

100

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Query:  MFVAYRDWHEMLPFALYGYRISVRTSTGATAFSLVYGFETILPIEVEVLSLGVIQEVELDEEKWAQVRYEQLNFIEERRLTALCRGQLYQKK
        MFVAYRDWHEMLPFALYGYRISVRTSTGATAFSLVYGFETILPIEVEVLSLGVIQEVELDEEKWAQVRYEQLNFIEERRLTALCRGQLYQKK
Subjt:  MFVAYRDWHEMLPFALYGYRISVRTSTGATAFSLVYGFETILPIEVEVLSLGVIQEVELDEEKWAQVRYEQLNFIEERRLTALCRGQLYQKK

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SVL0 Pol polyprotein

1.1e-36

86.96

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Query:  MFVAYRDWHEMLPFALYGYRISVRTSTGATAFSLVYGFETILPIEVEVLSLGVIQEVELDEEKWAQVRYEQLNFIEERRLTALCRGQLYQKK
        M V YRDWHEMLPFAL+GYRISVRTSTG+T FSLVYGFE +LP+EVEV SL VIQE+ELDE KWAQVRYEQLNFIEERRLTALCRGQLYQKK
Subjt:  MFVAYRDWHEMLPFALYGYRISVRTSTGATAFSLVYGFETILPIEVEVLSLGVIQEVELDEEKWAQVRYEQLNFIEERRLTALCRGQLYQKK

A0A5A7UFV7 Pol polyprotein

2.4e-41

97.83

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Query:  MFVAYRDWHEMLPFALYGYRISVRTSTGATAFSLVYGFETILPIEVEVLSLGVIQEVELDEEKWAQVRYEQLNFIEERRLTALCRGQLYQKK
        MFVAYR WHEMLPFALYGYRISVRTSTGATAFS VYGFETILPIEVEVLSLGVIQEVELDEEKWAQVRYEQLNFIEERRLTALCRGQLYQKK
Subjt:  MFVAYRDWHEMLPFALYGYRISVRTSTGATAFSLVYGFETILPIEVEVLSLGVIQEVELDEEKWAQVRYEQLNFIEERRLTALCRGQLYQKK

A0A5A7UZT9 Pol polyprotein

1.0e-34

83.7

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Query:  MFVAYRDWHEMLPFALYGYRISVRTSTGATAFSLVYGFETILPIEVEVLSLGVIQEVELDEEKWAQVRYEQLNFIEERRLTALCRGQLYQKK
        M V YRDWHEMLPFAL+GYRISVRTSTG+T  SLVYGFE +LP+EVEV SL VIQEVELDE KWAQVRY+QLNFIEER LTALC+GQLYQKK
Subjt:  MFVAYRDWHEMLPFALYGYRISVRTSTGATAFSLVYGFETILPIEVEVLSLGVIQEVELDEEKWAQVRYEQLNFIEERRLTALCRGQLYQKK

A0A5A7VAF2 RNA-directed DNA polymerase

3.1e-36

86.96

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Query:  MFVAYRDWHEMLPFALYGYRISVRTSTGATAFSLVYGFETILPIEVEVLSLGVIQEVELDEEKWAQVRYEQLNFIEERRLTALCRGQLYQKK
        M V YRDWHEMLPFAL GYRISVRTSTG+T FSLVYGFE +LP+EVEV SL VIQE+ELDE KWAQVRYEQLNFIEERRLTALCRGQLYQKK
Subjt:  MFVAYRDWHEMLPFALYGYRISVRTSTGATAFSLVYGFETILPIEVEVLSLGVIQEVELDEEKWAQVRYEQLNFIEERRLTALCRGQLYQKK

A0A5D3CZI6 Pol polyprotein

3.4e-43

100

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Query:  MFVAYRDWHEMLPFALYGYRISVRTSTGATAFSLVYGFETILPIEVEVLSLGVIQEVELDEEKWAQVRYEQLNFIEERRLTALCRGQLYQKK
        MFVAYRDWHEMLPFALYGYRISVRTSTGATAFSLVYGFETILPIEVEVLSLGVIQEVELDEEKWAQVRYEQLNFIEERRLTALCRGQLYQKK
Subjt:  MFVAYRDWHEMLPFALYGYRISVRTSTGATAFSLVYGFETILPIEVEVLSLGVIQEVELDEEKWAQVRYEQLNFIEERRLTALCRGQLYQKK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGTTTGTCGCTTATAGAGATTGGCATGAAATGCTGCCTTTCGCATTGTATGGATATAGAATATCAGTTCGCACGTCAACAGGGGCAACCGCTTTTTCACTGGTGTATGG
TTTCGAAACAATTTTACCTATTGAAGTTGAGGTGCTATCCCTTGGGGTAATCCAAGAGGTAGAACTAGATGAAGAAAAGTGGGCTCAAGTAAGGTACGAGCAATTGAATT
TCATAGAAGAAAGGAGACTGACTGCACTATGTAGAGGACAGTTGTACCAAAAGAAATAG

mRNA sequence

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Protein sequence

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MFVAYRDWHEMLPFALYGYRISVRTSTGATAFSLVYGFETILPIEVEVLSLGVIQEVELDEEKWAQVRYEQLNFIEERRLTALCRGQLYQKK

IVF0016277 (gene) of Melon (IVF77) v1 genome