; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0016292 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0016292
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr01:8452874..8453227
RNA-Seq ExpressionIVF0016292
SyntenyIVF0016292
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR024752 - Myb/SANT-like domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033487.1 uncharacterized protein E6C27_scaffold261G00210 [Cucumis melo var. makuwa]2.60e-5276.32Show/hide
Query:  MALKNSKVTEYRWTTVEDEILVECLLQLVEEGGWRADNRTFKLGYLVQVQKLMKEKIPGSNIQVIPNLESRVKILKKHYIAIAEMMRPMCSGFGWNEKRK
        MA  NSKVT++ WTT+EDE LVECLLQLVE+G WR DN TFK GYLVQVQKLMKEKI  SNIQV PNLES VKILKK Y  IAEMM P+CSGF WN++RK
Subjt:  MALKNSKVTEYRWTTVEDEILVECLLQLVEEGGWRADNRTFKLGYLVQVQKLMKEKIPGSNIQVIPNLESRVKILKKHYIAIAEMMRPMCSGFGWNEKRK

Query:  CIEAEKSVFDNWVK
        CIEAEKSV ++WVK
Subjt:  CIEAEKSVFDNWVK

KAA0041970.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]2.39e-5477.48Show/hide
Query:  KVTEYRWTTVEDEILVECLLQLVEEGGWRADNRTFKLGYLVQVQKLMKEKIPGSNIQVIPNLESRVKILKKHYIAIAEMMRPMCSGFGWNEKRKCIEAEK
        +  +++WTT+E+E LVECLLQLVEEGGWR DN TFK GYLVQVQKLMKEKIP SNIQV PNLESRVKILKK Y  IA+MM P C+ FGWNE+RKCIEAEK
Subjt:  KVTEYRWTTVEDEILVECLLQLVEEGGWRADNRTFKLGYLVQVQKLMKEKIPGSNIQVIPNLESRVKILKKHYIAIAEMMRPMCSGFGWNEKRKCIEAEK

Query:  SVFDNWVKVRR
        SVFD+WVKV R
Subjt:  SVFDNWVKVRR

KAA0050106.1 retrotransposon protein [Cucumis melo var. makuwa]2.44e-6283.76Show/hide
Query:  MALKNSKVTEYRWTTVEDEILVECLLQLVEEGGWRADNRTFKLGYLVQVQKLMKEKIPGSNIQVIPNLESRVKILKKHYIAIAEMMRPMCSGFGWNEKRK
        MA  NSK T++RWTT+ DE+LVECLLQLVEEGGWRADN TFKLGYLVQVQKLMKEKI GSNIQV PNL+SRVKILKK YIAIAEMM P CSGFGWNE+RK
Subjt:  MALKNSKVTEYRWTTVEDEILVECLLQLVEEGGWRADNRTFKLGYLVQVQKLMKEKIPGSNIQVIPNLESRVKILKKHYIAIAEMMRPMCSGFGWNEKRK

Query:  CIEAEKSVFDNWVKVRR
        CIEAEKSVFD+WVK  R
Subjt:  CIEAEKSVFDNWVKVRR

TYJ96933.1 retrotransposon protein [Cucumis melo var. makuwa]1.37e-5678.07Show/hide
Query:  MALKNSKVTEYRWTTVEDEILVECLLQLVEEGGWRADNRTFKLGYLVQVQKLMKEKIPGSNIQVIPNLESRVKILKKHYIAIAEMMRPMCSGFGWNEKRK
        MA  NSK T++RWTT++D+ LVECLLQLVEEGGWRA+N TFK  YLVQVQKLMKEKIP SNIQV  NLESRVK LKK Y AIA+MM P CS FGWNE+RK
Subjt:  MALKNSKVTEYRWTTVEDEILVECLLQLVEEGGWRADNRTFKLGYLVQVQKLMKEKIPGSNIQVIPNLESRVKILKKHYIAIAEMMRPMCSGFGWNEKRK

Query:  CIEAEKSVFDNWVK
        CIEAEKSVFD+WVK
Subjt:  CIEAEKSVFDNWVK

XP_008455678.1 PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo]3.54e-5678.07Show/hide
Query:  MALKNSKVTEYRWTTVEDEILVECLLQLVEEGGWRADNRTFKLGYLVQVQKLMKEKIPGSNIQVIPNLESRVKILKKHYIAIAEMMRPMCSGFGWNEKRK
        MA  NSK T++RWTT++D+ LVECLLQLVEEGGWRA+N TFK  YLVQVQKLMKEKIP SNIQV  NLESRVK LKK Y AIA+MM P CS FGWNE+RK
Subjt:  MALKNSKVTEYRWTTVEDEILVECLLQLVEEGGWRADNRTFKLGYLVQVQKLMKEKIPGSNIQVIPNLESRVKILKKHYIAIAEMMRPMCSGFGWNEKRK

Query:  CIEAEKSVFDNWVK
        CIEAEKSVFD+WVK
Subjt:  CIEAEKSVFDNWVK

TrEMBL top hitse value%identityAlignment
A0A1S3C252 uncharacterized protein At2g29880-like6.7e-4478.07Show/hide
Query:  MALKNSKVTEYRWTTVEDEILVECLLQLVEEGGWRADNRTFKLGYLVQVQKLMKEKIPGSNIQVIPNLESRVKILKKHYIAIAEMMRPMCSGFGWNEKRK
        MA  NSK T++RWTT++D+ LVECLLQLVEEGGWRA+N TFK  YLVQVQKLMKEKIP SNIQV  NLESRVK LKK Y AIA+MM P CS FGWNE+RK
Subjt:  MALKNSKVTEYRWTTVEDEILVECLLQLVEEGGWRADNRTFKLGYLVQVQKLMKEKIPGSNIQVIPNLESRVKILKKHYIAIAEMMRPMCSGFGWNEKRK

Query:  CIEAEKSVFDNWVK
        CIEAEKSVFD+WVK
Subjt:  CIEAEKSVFDNWVK

A0A5A7SW62 Myb_DNA-bind_3 domain-containing protein1.8e-4176.32Show/hide
Query:  MALKNSKVTEYRWTTVEDEILVECLLQLVEEGGWRADNRTFKLGYLVQVQKLMKEKIPGSNIQVIPNLESRVKILKKHYIAIAEMMRPMCSGFGWNEKRK
        MA  NSKVT++ WTT+EDE LVECLLQLVE+G WR DN TFK GYLVQVQKLMKEKI  SNIQV PNLES VKILKK Y  IAEMM P+CSGF WN++RK
Subjt:  MALKNSKVTEYRWTTVEDEILVECLLQLVEEGGWRADNRTFKLGYLVQVQKLMKEKIPGSNIQVIPNLESRVKILKKHYIAIAEMMRPMCSGFGWNEKRK

Query:  CIEAEKSVFDNWVK
        CIEAEKSV ++WVK
Subjt:  CIEAEKSVFDNWVK

A0A5A7TF70 Putative nuclease HARBI14.3e-4377.48Show/hide
Query:  KVTEYRWTTVEDEILVECLLQLVEEGGWRADNRTFKLGYLVQVQKLMKEKIPGSNIQVIPNLESRVKILKKHYIAIAEMMRPMCSGFGWNEKRKCIEAEK
        +  +++WTT+E+E LVECLLQLVEEGGWR DN TFK GYLVQVQKLMKEKIP SNIQV PNLESRVKILKK Y  IA+MM P C+ FGWNE+RKCIEAEK
Subjt:  KVTEYRWTTVEDEILVECLLQLVEEGGWRADNRTFKLGYLVQVQKLMKEKIPGSNIQVIPNLESRVKILKKHYIAIAEMMRPMCSGFGWNEKRKCIEAEK

Query:  SVFDNWVKVRR
        SVFD+WVKV R
Subjt:  SVFDNWVKVRR

A0A5A7U7F7 Retrotransposon protein1.5e-4883.76Show/hide
Query:  MALKNSKVTEYRWTTVEDEILVECLLQLVEEGGWRADNRTFKLGYLVQVQKLMKEKIPGSNIQVIPNLESRVKILKKHYIAIAEMMRPMCSGFGWNEKRK
        MA  NSK T++RWTT+ DE+LVECLLQLVEEGGWRADN TFKLGYLVQVQKLMKEKI GSNIQV PNL+SRVKILKK YIAIAEMM P CSGFGWNE+RK
Subjt:  MALKNSKVTEYRWTTVEDEILVECLLQLVEEGGWRADNRTFKLGYLVQVQKLMKEKIPGSNIQVIPNLESRVKILKKHYIAIAEMMRPMCSGFGWNEKRK

Query:  CIEAEKSVFDNWVKVRR
        CIEAEKSVFD+WVK  R
Subjt:  CIEAEKSVFDNWVKVRR

A0A5D3BC95 Retrotransposon protein6.7e-4478.07Show/hide
Query:  MALKNSKVTEYRWTTVEDEILVECLLQLVEEGGWRADNRTFKLGYLVQVQKLMKEKIPGSNIQVIPNLESRVKILKKHYIAIAEMMRPMCSGFGWNEKRK
        MA  NSK T++RWTT++D+ LVECLLQLVEEGGWRA+N TFK  YLVQVQKLMKEKIP SNIQV  NLESRVK LKK Y AIA+MM P CS FGWNE+RK
Subjt:  MALKNSKVTEYRWTTVEDEILVECLLQLVEEGGWRADNRTFKLGYLVQVQKLMKEKIPGSNIQVIPNLESRVKILKKHYIAIAEMMRPMCSGFGWNEKRK

Query:  CIEAEKSVFDNWVK
        CIEAEKSVFD+WVK
Subjt:  CIEAEKSVFDNWVK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATTGAAAAATTCAAAAGTCACTGAGTATCGATGGACAACCGTTGAGGATGAGATATTAGTTGAGTGCTTACTACAACTAGTGGAGGAAGGTGGCTGGAGGGCTGA
TAATAGAACATTCAAACTGGGATATTTGGTACAAGTACAAAAACTAATGAAAGAAAAAATTCCTGGAAGCAACATACAAGTGATTCCAAATCTAGAGTCGAGAGTAAAAA
TTTTAAAGAAGCACTACATTGCCATAGCAGAGATGATGAGACCAATGTGTAGTGGGTTTGGCTGGAATGAGAAACGAAAGTGCATTGAGGCAGAGAAATCTGTGTTCGAT
AACTGGGTTAAGGTAAGAAGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCATTGAAAAATTCAAAAGTCACTGAGTATCGATGGACAACCGTTGAGGATGAGATATTAGTTGAGTGCTTACTACAACTAGTGGAGGAAGGTGGCTGGAGGGCTGA
TAATAGAACATTCAAACTGGGATATTTGGTACAAGTACAAAAACTAATGAAAGAAAAAATTCCTGGAAGCAACATACAAGTGATTCCAAATCTAGAGTCGAGAGTAAAAA
TTTTAAAGAAGCACTACATTGCCATAGCAGAGATGATGAGACCAATGTGTAGTGGGTTTGGCTGGAATGAGAAACGAAAGTGCATTGAGGCAGAGAAATCTGTGTTCGAT
AACTGGGTTAAGGTAAGAAGATGA
Protein sequenceShow/hide protein sequence
MALKNSKVTEYRWTTVEDEILVECLLQLVEEGGWRADNRTFKLGYLVQVQKLMKEKIPGSNIQVIPNLESRVKILKKHYIAIAEMMRPMCSGFGWNEKRKCIEAEKSVFD
NWVKVRR