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IVF0016320 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0016320
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr03:17845164..17845466
RNA-Seq ExpressionIVF0016320
SyntenyIVF0016320
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051922.1 retrotransposon protein [Cucumis melo var. makuwa]1.05e-1446.39Show/hide
Query:  GRFSETFADIGSNKPLSMSGLTCRMRTISYLCVAKE-LTCSRRMYTHHKLLVRQSGR--SSELKRKRGSQREGKIEVIHMTLECTNDQLMTIAEWSA
        GRF ETF D+GSN+P    G         +  V  + +  S+      +  +   GR  SSELK KRG+Q+EG++EVIHM LECTND L TIAEW A
Subjt:  GRFSETFADIGSNKPLSMSGLTCRMRTISYLCVAKE-LTCSRRMYTHHKLLVRQSGR--SSELKRKRGSQREGKIEVIHMTLECTNDQLMTIAEWSA

KAA0051964.1 retrotransposon protein [Cucumis melo var. makuwa]1.75e-65100Show/hide
Query:  MGRFSETFADIGSNKPLSMSGLTCRMRTISYLCVAKELTCSRRMYTHHKLLVRQSGRSSELKRKRGSQREGKIEVIHMTLECTNDQLMTIAEWSAQRPCQ
        MGRFSETFADIGSNKPLSMSGLTCRMRTISYLCVAKELTCSRRMYTHHKLLVRQSGRSSELKRKRGSQREGKIEVIHMTLECTNDQLMTIAEWSAQRPCQ
Subjt:  MGRFSETFADIGSNKPLSMSGLTCRMRTISYLCVAKELTCSRRMYTHHKLLVRQSGRSSELKRKRGSQREGKIEVIHMTLECTNDQLMTIAEWSAQRPCQ

KAA0058317.1 retrotransposon protein [Cucumis melo var. makuwa]9.80e-1345.74Show/hide
Query:  GRFSETFADIGSNKPLSMSGLTCRMRTISY---LCVAKELTCSRRMYTHHKLLVRQSGRSSELKRKRGSQREGKIEVIHMTLECTNDQLMTIAE
        G F ETFAD+GSN+ +             Y   + +++E  C+ R       ++    RS+  KRKRGSQREGK++VIHMTLECTNDQL TI E
Subjt:  GRFSETFADIGSNKPLSMSGLTCRMRTISY---LCVAKELTCSRRMYTHHKLLVRQSGRSSELKRKRGSQREGKIEVIHMTLECTNDQLMTIAE

KAA0066074.1 retrotransposon protein [Cucumis melo var. makuwa]1.41e-1347.31Show/hide
Query:  MGRFSETFADIGSNKPLSMSGLTCRMRTISYLCVAKE-LTCSRRMYTHHKLLVRQSGRSSELKRKRGSQREGKIEVIHMTLECTNDQLMTIAE
        MGRF+ETF D+GSN+P+   G         +  V  + +  S++     +      GR    KRKRGSQ+EG+IEVIHM LECTN+QLMTIAE
Subjt:  MGRFSETFADIGSNKPLSMSGLTCRMRTISYLCVAKE-LTCSRRMYTHHKLLVRQSGRSSELKRKRGSQREGKIEVIHMTLECTNDQLMTIAE

TYK09490.1 retrotransposon protein [Cucumis melo var. makuwa]9.80e-1345.74Show/hide
Query:  GRFSETFADIGSNKPLSMSGLTCRMRTISY---LCVAKELTCSRRMYTHHKLLVRQSGRSSELKRKRGSQREGKIEVIHMTLECTNDQLMTIAE
        G F ETFAD+GSN+ +             Y   + +++E  C+ R     +  +R    S+  KRKRGSQREGK++VIHMTLECTNDQL TI E
Subjt:  GRFSETFADIGSNKPLSMSGLTCRMRTISY---LCVAKELTCSRRMYTHHKLLVRQSGRSSELKRKRGSQREGKIEVIHMTLECTNDQLMTIAE

TrEMBL top hitse value%identityAlignment
A0A5A7VFJ2 Retrotransposon protein3.2e-1047.31Show/hide
Query:  MGRFSETFADIGSNKPLSMSGLTCRMRTISYLCV-AKELTCSRRMYTHHKLLVRQSGRSSELKRKRGSQREGKIEVIHMTLECTNDQLMTIAE
        MGRF+ETF D+GSN+P+   G         +  V ++ +  S++     +      GR    KRKRGSQ+EG+IEVIHM LECTN+QLMTIAE
Subjt:  MGRFSETFADIGSNKPLSMSGLTCRMRTISYLCV-AKELTCSRRMYTHHKLLVRQSGRSSELKRKRGSQREGKIEVIHMTLECTNDQLMTIAE

A0A5A7VKA9 Retrotransposon protein2.4e-1046.39Show/hide
Query:  RFSETFADIGSNKPLSMSGLTCRMRTISYLCVAKE-LTCSRRMYTHHKLLVRQSGR--SSELKRKRGSQREGKIEVIHMTLECTNDQLMTIAEWSAQ
        RF ETF D+ SN+P+   G         +  +  + +  S++     +      GR  SS LKRKRGSQREGKIEVIHM LEC NDQ  TIAEW A+
Subjt:  RFSETFADIGSNKPLSMSGLTCRMRTISYLCVAKE-LTCSRRMYTHHKLLVRQSGR--SSELKRKRGSQREGKIEVIHMTLECTNDQLMTIAEWSAQ

A0A5D3C2G6 Retrotransposon protein2.7e-49100Show/hide
Query:  MGRFSETFADIGSNKPLSMSGLTCRMRTISYLCVAKELTCSRRMYTHHKLLVRQSGRSSELKRKRGSQREGKIEVIHMTLECTNDQLMTIAEWSAQRPCQ
        MGRFSETFADIGSNKPLSMSGLTCRMRTISYLCVAKELTCSRRMYTHHKLLVRQSGRSSELKRKRGSQREGKIEVIHMTLECTNDQLMTIAEWSAQRPCQ
Subjt:  MGRFSETFADIGSNKPLSMSGLTCRMRTISYLCVAKELTCSRRMYTHHKLLVRQSGRSSELKRKRGSQREGKIEVIHMTLECTNDQLMTIAEWSAQRPCQ

A0A5D3CLE8 Retrotransposon protein3.7e-1146.39Show/hide
Query:  GRFSETFADIGSNKPLSMSGLTCRMRTISYLCVAKE-LTCSRRMYTHHKLLVRQSGR--SSELKRKRGSQREGKIEVIHMTLECTNDQLMTIAEWSA
        GRF ETF D+GSN+P    G         +  V  + +  S+      +  +   GR  SSELK KRG+Q+EG++EVIHM LECTND L TIAEW A
Subjt:  GRFSETFADIGSNKPLSMSGLTCRMRTISYLCVAKE-LTCSRRMYTHHKLLVRQSGR--SSELKRKRGSQREGKIEVIHMTLECTNDQLMTIAEWSA

A0A5D3CUK6 Retrotransposon protein2.4e-1046.39Show/hide
Query:  RFSETFADIGSNKPLSMSGLTCRMRTISYLCVAKE-LTCSRRMYTHHKLLVRQSGR--SSELKRKRGSQREGKIEVIHMTLECTNDQLMTIAEWSAQ
        RF ETF D+ SN+P+   G         +  +  + +  S++     +      GR  SS LKRKRGSQREGKIEVIHM LEC NDQ  TIAEW A+
Subjt:  RFSETFADIGSNKPLSMSGLTCRMRTISYLCVAKE-LTCSRRMYTHHKLLVRQSGR--SSELKRKRGSQREGKIEVIHMTLECTNDQLMTIAEWSAQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTCGCTTCTCTGAGACATTCGCCGATATTGGATCTAACAAGCCATTGAGTATGAGTGGTTTGACATGCCGGATGAGAACGATTTCCTATCTATGTGTAGCTAAGGA
ATTGACATGTTCTAGGAGGATGTACACACATCACAAACTTCTCGTACGTCAGAGTGGCCGATCGAGCGAATTGAAGAGGAAGAGGGGAAGCCAGCGAGAGGGCAAGATTG
AAGTCATACATATGACCCTCGAGTGTACCAATGACCAACTCATGACGATTGCCGAGTGGTCTGCACAACGCCCTTGCCAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGGTCGCTTCTCTGAGACATTCGCCGATATTGGATCTAACAAGCCATTGAGTATGAGTGGTTTGACATGCCGGATGAGAACGATTTCCTATCTATGTGTAGCTAAGGA
ATTGACATGTTCTAGGAGGATGTACACACATCACAAACTTCTCGTACGTCAGAGTGGCCGATCGAGCGAATTGAAGAGGAAGAGGGGAAGCCAGCGAGAGGGCAAGATTG
AAGTCATACATATGACCCTCGAGTGTACCAATGACCAACTCATGACGATTGCCGAGTGGTCTGCACAACGCCCTTGCCAATGA
Protein sequenceShow/hide protein sequence
MGRFSETFADIGSNKPLSMSGLTCRMRTISYLCVAKELTCSRRMYTHHKLLVRQSGRSSELKRKRGSQREGKIEVIHMTLECTNDQLMTIAEWSAQRPCQ