CuGenDBv2

Gene ID	IVF0016327
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Gag protease polyprotein
Genome location	chr10:23824768..23825010
RNA-Seq Expression	IVF0016327
Synteny	IVF0016327
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006508 - proteolysis (biological process) GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0004519 - endonuclease activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0032474.1 gag-protease polyprotein [Cucumis melo var. makuwa]

3.11e-42

96.25

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Query:  MTVEQYDAEFDMLSRFAPEMIATKVARADKFVRGLRLDIQGLVRAFRPATHADALRLAVDLSLQERANSSKVAGRGSTSG
        MTVEQYDAEFDMLSRFAPEMIAT+ ARADKFVRGLRLDIQGLVRAFRPATHADALRLAVDLSLQERANSSK AGRGSTSG
Subjt:  MTVEQYDAEFDMLSRFAPEMIATKVARADKFVRGLRLDIQGLVRAFRPATHADALRLAVDLSLQERANSSKVAGRGSTSG

KAA0035392.1 gag-protease polyprotein [Cucumis melo var. makuwa]

3.28e-42

96.25

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Query:  MTVEQYDAEFDMLSRFAPEMIATKVARADKFVRGLRLDIQGLVRAFRPATHADALRLAVDLSLQERANSSKVAGRGSTSG
        MTVEQYDAEFDMLSRFAPEMIAT+ ARADKFVRGLRLDIQGLVRAFRPATHADALRLAVDLSLQERANSSK AGRGSTSG
Subjt:  MTVEQYDAEFDMLSRFAPEMIATKVARADKFVRGLRLDIQGLVRAFRPATHADALRLAVDLSLQERANSSKVAGRGSTSG

KAA0035501.1 gag-protease polyprotein [Cucumis melo var. makuwa]

1.10e-41

92.5

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Query:  MTVEQYDAEFDMLSRFAPEMIATKVARADKFVRGLRLDIQGLVRAFRPATHADALRLAVDLSLQERANSSKVAGRGSTSG
        MTVEQYDA+FDMLSRFAPEMI T+ ARADKFVRGLRLDIQGLVRAFRPATHADALRLAVDLSLQERANSSKV GRGS+SG
Subjt:  MTVEQYDAEFDMLSRFAPEMIATKVARADKFVRGLRLDIQGLVRAFRPATHADALRLAVDLSLQERANSSKVAGRGSTSG

KAA0041026.1 gag-protease polyprotein [Cucumis melo var. makuwa]

1.35e-43

96.25

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Query:  MTVEQYDAEFDMLSRFAPEMIATKVARADKFVRGLRLDIQGLVRAFRPATHADALRLAVDLSLQERANSSKVAGRGSTSG
        MTVEQYDAEFDMLSRFAPEMIAT+ ARADKFVRGLRLDIQGLVRAFRPATHADALRLAVDLSLQERANSSK AGRGSTSG
Subjt:  MTVEQYDAEFDMLSRFAPEMIATKVARADKFVRGLRLDIQGLVRAFRPATHADALRLAVDLSLQERANSSKVAGRGSTSG

TYK13745.1 gag-protease polyprotein [Cucumis melo var. makuwa]

2.53e-42

93.75

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Query:  MTVEQYDAEFDMLSRFAPEMIATKVARADKFVRGLRLDIQGLVRAFRPATHADALRLAVDLSLQERANSSKVAGRGSTSG
        MTV+QYDAEFDMLSRFAPEMIAT+ ARADKFVRGLRLDIQGLVRAFRP THADALRLAVDLSLQERANSSK AGRGSTSG
Subjt:  MTVEQYDAEFDMLSRFAPEMIATKVARADKFVRGLRLDIQGLVRAFRPATHADALRLAVDLSLQERANSSKVAGRGSTSG

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TXM6 Reverse transcriptase

1.4e-32

96.25

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Query:  MTVEQYDAEFDMLSRFAPEMIATKVARADKFVRGLRLDIQGLVRAFRPATHADALRLAVDLSLQERANSSKVAGRGSTSG
        MTVEQYDAEFDMLSRFAPEMIAT+ ARADKFVRGLRLDIQGLVRAFRPATHADALRLAVDLSLQERANSSK AGRGSTSG
Subjt:  MTVEQYDAEFDMLSRFAPEMIATKVARADKFVRGLRLDIQGLVRAFRPATHADALRLAVDLSLQERANSSKVAGRGSTSG

A0A5A7UZ62 Reverse transcriptase

1.4e-32

96.25

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Query:  MTVEQYDAEFDMLSRFAPEMIATKVARADKFVRGLRLDIQGLVRAFRPATHADALRLAVDLSLQERANSSKVAGRGSTSG
        MTVEQYDAEFDMLSRFAPEMIAT+ ARADKFVRGLRLDIQGLVRAFRPATHADALRLAVDLSLQERANSSK AGRGSTSG
Subjt:  MTVEQYDAEFDMLSRFAPEMIATKVARADKFVRGLRLDIQGLVRAFRPATHADALRLAVDLSLQERANSSKVAGRGSTSG

A0A5A7V003 Reverse transcriptase

1.4e-32

96.25

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Query:  MTVEQYDAEFDMLSRFAPEMIATKVARADKFVRGLRLDIQGLVRAFRPATHADALRLAVDLSLQERANSSKVAGRGSTSG
        MTVEQYDAEFDMLSRFAPEMIAT+ ARADKFVRGLRLDIQGLVRAFRPATHADALRLAVDLSLQERANSSK AGRGSTSG
Subjt:  MTVEQYDAEFDMLSRFAPEMIATKVARADKFVRGLRLDIQGLVRAFRPATHADALRLAVDLSLQERANSSKVAGRGSTSG

A0A5A7V810 Reverse transcriptase

4.8e-33

97.5

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Query:  MTVEQYDAEFDMLSRFAPEMIATKVARADKFVRGLRLDIQGLVRAFRPATHADALRLAVDLSLQERANSSKVAGRGSTSG
        MTVEQYDAEFDMLSRFAPEMIAT+ ARADKFVRGLRLDIQGLVRAFRPATHADALRLAVDLSLQERANSSKVAGRGSTSG
Subjt:  MTVEQYDAEFDMLSRFAPEMIATKVARADKFVRGLRLDIQGLVRAFRPATHADALRLAVDLSLQERANSSKVAGRGSTSG

A0A5D3BU69 Gag protease polyprotein

1.6e-33

98.75

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Query:  MTVEQYDAEFDMLSRFAPEMIATKVARADKFVRGLRLDIQGLVRAFRPATHADALRLAVDLSLQERANSSKVAGRGSTSG
        MTVEQYDAEFDMLSRFAPEMIAT+VARADKFVRGLRLDIQGLVRAFRPATHADALRLAVDLSLQERANSSKVAGRGSTSG
Subjt:  MTVEQYDAEFDMLSRFAPEMIATKVARADKFVRGLRLDIQGLVRAFRPATHADALRLAVDLSLQERANSSKVAGRGSTSG

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGACAGTAGAACAGTATGATGCGGAGTTTGACATGTTATCCCGCTTCGCTCCCGAGATGATAGCGACTAAGGTGGCCAGAGCTGATAAGTTTGTTAGAGGCCTCAGACT
GGACATCCAGGGTTTGGTTCGAGCCTTTCGACCCGCCACTCATGCCGATGCACTGCGCCTGGCAGTGGATCTCAGTTTACAGGAGAGGGCTAACTCGTCCAAGGTTGCAG
GTAGAGGTTCGACCTCAGGATAG

mRNA sequence

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Protein sequence

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MTVEQYDAEFDMLSRFAPEMIATKVARADKFVRGLRLDIQGLVRAFRPATHADALRLAVDLSLQERANSSKVAGRGSTSG

IVF0016327 (gene) of Melon (IVF77) v1 genome