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IVF0016375 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0016375
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGag/pol protein
Genome locationchr03:15562431..15562685
RNA-Seq ExpressionIVF0016375
SyntenyIVF0016375
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035756.1 gag/pol protein [Cucumis melo var. makuwa]1.71e-4185.37Show/hide
Query:  MSKRKEMEANVATTEKQLVGGSSSKTIVGPSLMKKKRKGKTPKNNKGKKVAKGKCYHCNEDGHWLRNCPKYLAEKKAEKEAQ
        M K KE+EAN+AT EK+LVGGSSSKT VGPS +KKK KGKTPKN+KGKKVAKGKCYHCNE+GHWLRNCPKYLAEKKAEKEAQ
Subjt:  MSKRKEMEANVATTEKQLVGGSSSKTIVGPSLMKKKRKGKTPKNNKGKKVAKGKCYHCNEDGHWLRNCPKYLAEKKAEKEAQ

KAA0045181.1 gag/pol protein [Cucumis melo var. makuwa]1.52e-3984.15Show/hide
Query:  MSKRKEMEANVATTEKQLVGGSSSKTIVGPSLMKKKRKGKTPKNNKGKKVAKGKCYHCNEDGHWLRNCPKYLAEKKAEKEAQ
        M K KE+EANVATTEK+LV GSSSKT VGPS +KKKRKGK PKN+KGKKVAKGKCYHCNED HWL+NC KYLAEKKAEKEAQ
Subjt:  MSKRKEMEANVATTEKQLVGGSSSKTIVGPSLMKKKRKGKTPKNNKGKKVAKGKCYHCNEDGHWLRNCPKYLAEKKAEKEAQ

KAA0046201.1 gag/pol protein [Cucumis melo var. makuwa]6.23e-4286.9Show/hide
Query:  MSKRKEMEANVATTEKQLVGGSSSKTIVGPSLMKKKRKGKTPKNNKGKKVAKGKCYHCNEDGHWLRNCPKYLAEKKAEKEAQRN
        MSK KEME+NVA TEK+LV GSSSKT VGPSLMK KRKGKTP N+KGK VAKGKCYHCNEDGHWLRNCPKYLAEKKAEKEAQ N
Subjt:  MSKRKEMEANVATTEKQLVGGSSSKTIVGPSLMKKKRKGKTPKNNKGKKVAKGKCYHCNEDGHWLRNCPKYLAEKKAEKEAQRN

TYK04285.1 gag/pol protein [Cucumis melo var. makuwa]5.35e-4183.33Show/hide
Query:  MSKRKEMEANVATTEKQLVGGSSSKTIVGPSLMKKKRKGKTPKNNKGKKVAKGKCYHCNEDGHWLRNCPKYLAEKKAEKEAQRN
        M K KE+E NV TTEK+LVGGSSSKT VG   MKKKRKGKTPKN++GKKVAKGKCYHCNEDGHWLRNCPKYL EKKA+KEAQRN
Subjt:  MSKRKEMEANVATTEKQLVGGSSSKTIVGPSLMKKKRKGKTPKNNKGKKVAKGKCYHCNEDGHWLRNCPKYLAEKKAEKEAQRN

TYK29862.1 gag/pol protein [Cucumis melo var. makuwa]2.09e-4286.59Show/hide
Query:  MSKRKEMEANVATTEKQLVGGSSSKTIVGPSLMKKKRKGKTPKNNKGKKVAKGKCYHCNEDGHWLRNCPKYLAEKKAEKEAQ
        M K KE+EAN+ATTEK+LVGGSSSKT VGPS +KKK KGKTPKN+KGKKVAKGKCYHCNEDGHWLRNCP+YLAEKKAEKEAQ
Subjt:  MSKRKEMEANVATTEKQLVGGSSSKTIVGPSLMKKKRKGKTPKNNKGKKVAKGKCYHCNEDGHWLRNCPKYLAEKKAEKEAQ

TrEMBL top hitse value%identityAlignment
A0A5A7T0L9 Gag/pol protein1.4e-3085.37Show/hide
Query:  MSKRKEMEANVATTEKQLVGGSSSKTIVGPSLMKKKRKGKTPKNNKGKKVAKGKCYHCNEDGHWLRNCPKYLAEKKAEKEAQ
        M K KE+EAN+AT EK+LVGGSSSKT VGPS +KKK KGKTPKN+KGKKVAKGKCYHCNE+GHWLRNCPKYLAEKKAEKEAQ
Subjt:  MSKRKEMEANVATTEKQLVGGSSSKTIVGPSLMKKKRKGKTPKNNKGKKVAKGKCYHCNEDGHWLRNCPKYLAEKKAEKEAQ

A0A5A7TXW7 Gag/pol protein1.6e-3186.9Show/hide
Query:  MSKRKEMEANVATTEKQLVGGSSSKTIVGPSLMKKKRKGKTPKNNKGKKVAKGKCYHCNEDGHWLRNCPKYLAEKKAEKEAQRN
        MSK KEME+NVA TEK+LV GSSSKT VGPSLMK KRKGKTP N+KGK VAKGKCYHCNEDGHWLRNCPKYLAEKKAEKEAQ N
Subjt:  MSKRKEMEANVATTEKQLVGGSSSKTIVGPSLMKKKRKGKTPKNNKGKKVAKGKCYHCNEDGHWLRNCPKYLAEKKAEKEAQRN

A0A5D3BYQ2 Gag/pol protein2.3e-3083.33Show/hide
Query:  MSKRKEMEANVATTEKQLVGGSSSKTIVGPSLMKKKRKGKTPKNNKGKKVAKGKCYHCNEDGHWLRNCPKYLAEKKAEKEAQRN
        M K KE+E NV TTEK+LVGGSSSKT VG   MKKKRKGKTPKN++GKKVAKGKCYHCNEDGHWLRNCPKYL EKKA+KEAQRN
Subjt:  MSKRKEMEANVATTEKQLVGGSSSKTIVGPSLMKKKRKGKTPKNNKGKKVAKGKCYHCNEDGHWLRNCPKYLAEKKAEKEAQRN

A0A5D3CUK8 Gag/pol protein7.5e-2986.08Show/hide
Query:  KRKEMEANVATTEKQLVGGSSSKTIVGPSLMKKKRKGKTPKNNKGKKVAKGKCYHCNEDGHWLRNCPKYLAEKKAEKEA
        K KE+E NVATTEK+LVGGSSSKT VG   MKKKRKGKTPKN+KGKKVAK KCYHCNEDGHWLRNCPKYLAEKKAEK+A
Subjt:  KRKEMEANVATTEKQLVGGSSSKTIVGPSLMKKKRKGKTPKNNKGKKVAKGKCYHCNEDGHWLRNCPKYLAEKKAEKEA

A0A5D3E1U5 Gag/pol protein2.7e-3186.59Show/hide
Query:  MSKRKEMEANVATTEKQLVGGSSSKTIVGPSLMKKKRKGKTPKNNKGKKVAKGKCYHCNEDGHWLRNCPKYLAEKKAEKEAQ
        M K KE+EAN+ATTEK+LVGGSSSKT VGPS +KKK KGKTPKN+KGKKVAKGKCYHCNEDGHWLRNCP+YLAEKKAEKEAQ
Subjt:  MSKRKEMEANVATTEKQLVGGSSSKTIVGPSLMKKKRKGKTPKNNKGKKVAKGKCYHCNEDGHWLRNCPKYLAEKKAEKEAQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTAAGAGGAAGGAAATGGAAGCAAATGTTGCTACCACAGAGAAACAATTAGTAGGAGGATCGTCCTCTAAGACTATAGTTGGACCTTCACTTATGAAGAAGAAGAG
AAAGGGAAAGACTCCTAAGAATAATAAGGGAAAGAAAGTTGCTAAAGGTAAATGTTACCACTGCAACGAGGATGGACATTGGTTAAGAAATTGTCCAAAGTACCTTGCTG
AGAAGAAAGCTGAGAAGGAAGCACAAAGAAACTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGTAAGAGGAAGGAAATGGAAGCAAATGTTGCTACCACAGAGAAACAATTAGTAGGAGGATCGTCCTCTAAGACTATAGTTGGACCTTCACTTATGAAGAAGAAGAG
AAAGGGAAAGACTCCTAAGAATAATAAGGGAAAGAAAGTTGCTAAAGGTAAATGTTACCACTGCAACGAGGATGGACATTGGTTAAGAAATTGTCCAAAGTACCTTGCTG
AGAAGAAAGCTGAGAAGGAAGCACAAAGAAACTAG
Protein sequenceShow/hide protein sequence
MSKRKEMEANVATTEKQLVGGSSSKTIVGPSLMKKKRKGKTPKNNKGKKVAKGKCYHCNEDGHWLRNCPKYLAEKKAEKEAQRN