; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0016403 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0016403
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionProtein RDM1
Genome locationtig00000135:1632288..1634234
RNA-Seq ExpressionIVF0016403
SyntenyIVF0016403
Gene Ontology termsGO:0044030 - regulation of DNA methylation (biological process)
GO:0000419 - RNA polymerase V complex (cellular component)
InterPro domainsIPR015270 - Protein RDM1, plant
IPR036319 - RDM1 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0049342.1 protein RDM1 [Cucumis melo var. makuwa]3.54e-123100Show/hide
Query:  MKRPMPWNEQVDVISSGESSSSDSEAAVQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH
        MKRPMPWNEQVDVISSGESSSSDSEAAVQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH
Subjt:  MKRPMPWNEQVDVISSGESSSSDSEAAVQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH

Query:  YMTNILLKQWDQLRLGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
        YMTNILLKQWDQLRLGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
Subjt:  YMTNILLKQWDQLRLGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
XP_004134127.1 protein RDM1 [Cucumis sativus]5.87e-12297.7Show/hide
Query:  MKRPMPWNEQVDVISSGESSSSDSEAAVQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH
        MKRPMPWNEQVD+ISSGESSSSDSEAA+QNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH
Subjt:  MKRPMPWNEQVDVISSGESSSSDSEAAVQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH

Query:  YMTNILLKQWDQLRLGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
        Y+TNILLKQWDQLRLGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMH+AYVDSIFPQL
Subjt:  YMTNILLKQWDQLRLGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
XP_008438640.1 PREDICTED: protein RDM1 [Cucumis melo]1.01e-12299.43Show/hide
Query:  MKRPMPWNEQVDVISSGESSSSDSEAAVQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH
        MKRPMPWNEQVDVISSGESSSSDSEAAVQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH
Subjt:  MKRPMPWNEQVDVISSGESSSSDSEAAVQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH

Query:  YMTNILLKQWDQLRLGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
        Y+TNILLKQWDQLRLGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
Subjt:  YMTNILLKQWDQLRLGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
XP_022979547.1 protein RDM1-like [Cucurbita maxima]1.33e-11895.4Show/hide
Query:  MKRPMPWNEQVDVISSGESSSSDSEAAVQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH
        MKRPMPWNEQVDVISSGESSSSDSE  VQNDG+EFKPSLDDFKIPAKEMT+EGML+KRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH
Subjt:  MKRPMPWNEQVDVISSGESSSSDSEAAVQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH

Query:  YMTNILLKQWDQLRLGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
        Y+TNILLKQWDQLR GS DEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
Subjt:  YMTNILLKQWDQLRLGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
XP_038877941.1 protein RDM1 [Benincasa hispida]4.64e-11995.98Show/hide
Query:  MKRPMPWNEQVDVISSGESSSSDSEAAVQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH
        MKRPMPWNEQVDVISSGESSSSDSE  VQNDG+EFKPSLDDFKIPAKEMTSEGML+KRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH
Subjt:  MKRPMPWNEQVDVISSGESSSSDSEAAVQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH

Query:  YMTNILLKQWDQLRLGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
        Y+TNILLKQWDQLR GS DEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
Subjt:  YMTNILLKQWDQLRLGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
TrEMBL top hitse value%identityAlignment
A0A0A0L8M0 Uncharacterized protein1.6e-9497.7Show/hide
Query:  MKRPMPWNEQVDVISSGESSSSDSEAAVQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH
        MKRPMPWNEQVD+ISSGESSSSDSEAA+QNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH
Subjt:  MKRPMPWNEQVDVISSGESSSSDSEAAVQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH

Query:  YMTNILLKQWDQLRLGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
        Y+TNILLKQWDQLRLGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMH+AYVDSIFPQL
Subjt:  YMTNILLKQWDQLRLGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
A0A1S3AWI8 protein RDM14.3e-9599.43Show/hide
Query:  MKRPMPWNEQVDVISSGESSSSDSEAAVQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH
        MKRPMPWNEQVDVISSGESSSSDSEAAVQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH
Subjt:  MKRPMPWNEQVDVISSGESSSSDSEAAVQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH

Query:  YMTNILLKQWDQLRLGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
        Y+TNILLKQWDQLRLGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
Subjt:  YMTNILLKQWDQLRLGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
A0A5D3D0B3 Protein RDM11.9e-95100Show/hide
Query:  MKRPMPWNEQVDVISSGESSSSDSEAAVQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH
        MKRPMPWNEQVDVISSGESSSSDSEAAVQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH
Subjt:  MKRPMPWNEQVDVISSGESSSSDSEAAVQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH

Query:  YMTNILLKQWDQLRLGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
        YMTNILLKQWDQLRLGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
Subjt:  YMTNILLKQWDQLRLGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
A0A6J1GV10 protein RDM19.8e-9294.83Show/hide
Query:  MKRPMPWNEQVDVISSGESSSSDSEAAVQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH
        MKRPMPWNEQVDVISSGESSSSDSE  VQNDG+EFKPS+DDFKIPAKEMT+EGML+KRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH
Subjt:  MKRPMPWNEQVDVISSGESSSSDSEAAVQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH

Query:  YMTNILLKQWDQLRLGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
        Y+TNILLKQWDQLR GS DEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
Subjt:  YMTNILLKQWDQLRLGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
A0A6J1INZ9 protein RDM1-like5.8e-9295.4Show/hide
Query:  MKRPMPWNEQVDVISSGESSSSDSEAAVQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH
        MKRPMPWNEQVDVISSGESSSSDSE  VQNDG+EFKPSLDDFKIPAKEMT+EGML+KRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH
Subjt:  MKRPMPWNEQVDVISSGESSSSDSEAAVQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH

Query:  YMTNILLKQWDQLRLGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
        Y+TNILLKQWDQLR GS DEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
Subjt:  YMTNILLKQWDQLRLGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
SwissProt top hitse value%identityAlignment
Q9LUJ3 Protein RDM13.2e-4755.7Show/hide
Query:  SGESSSSDSEAAVQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYMTNILLKQWDQLRL
        SG+S SSD +A + +DG+             +++  EG L++RAEMYQ+YMKQ+ IP  RGS+IPFT+W+GL  S+KQLYGQPLHY+TN+LL++WDQ R 
Subjt:  SGESSSSDSEAAVQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYMTNILLKQWDQLRL

Query:  GSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQ
        G+  E + LD++IHP+KAEAT+WLVEEIHR T SH H+A LW SDPM+ +++D IFP+
Subjt:  GSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQ
Arabidopsis top hitse value%identityAlignment
AT3G22680.1 RNA-DIRECTED DNA METHYLATION 12.3e-4855.7Show/hide
Query:  SGESSSSDSEAAVQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYMTNILLKQWDQLRL
        SG+S SSD +A + +DG+             +++  EG L++RAEMYQ+YMKQ+ IP  RGS+IPFT+W+GL  S+KQLYGQPLHY+TN+LL++WDQ R 
Subjt:  SGESSSSDSEAAVQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYMTNILLKQWDQLRL

Query:  GSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQ
        G+  E + LD++IHP+KAEAT+WLVEEIHR T SH H+A LW SDPM+ +++D IFP+
Subjt:  GSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQ

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAGGCCAATGCCCTGGAATGAACAAGTAGATGTTATATCATCAGGTGAATCTTCTTCCTCTGATTCAGAAGCAGCAGTACAAAATGATGGATATGAGTTCAAGCC
TTCCCTAGACGATTTCAAAATCCCTGCCAAAGAAATGACATCTGAAGGTATGTTGATGAAAAGGGCGGAAATGTATCAAGAATACATGAAACAGATCCAAATCCCAGCAC
AACGTGGTTCTGTGATACCATTTACAACTTGGATGGGTTTAGGCAAATCTATAAAGCAACTTTATGGCCAACCTTTGCATTACATGACTAACATTCTACTCAAACAATGG
GATCAATTACGGTTAGGAAGTGCGGATGAATATAAGCCATTGGATACTGTAATTCATCCGAGTAAAGCTGAAGCAACTGTATGGCTGGTTGAAGAGATTCATAGGCGCAC
CTCATCACATCATCATGTTGCTAAACTCTGGTTATCAGACCCGATGCACGAAGCGTACGTTGACTCCATTTTCCCCCAACTATGA
mRNA sequenceShow/hide mRNA sequence
TGCCTTTCGGGAATTATTGAACCGGCCATTTGAACCAATCGTAAACTCTCTCTGATCTCCCCTCGCGCAAAATCAAAACGCCGCAAAACTCAAAACTTTGTGTCTCAAAA
TTCGAACTTGTTGAATTACTGAGCTCCACTGGTTATTCGTCCTGAAACCCACATCGACGAAGAGCTTCGGCTTTACGATTCAACCCTAGAAGAATCACATAATTTACAAA
ATGAAGAGGCCAATGCCCTGGAATGAACAAGTAGATGTTATATCATCAGGTGAATCTTCTTCCTCTGATTCAGAAGCAGCAGTACAAAATGATGGATATGAGTTCAAGCC
TTCCCTAGACGATTTCAAAATCCCTGCCAAAGAAATGACATCTGAAGGTATGTTGATGAAAAGGGCGGAAATGTATCAAGAATACATGAAACAGATCCAAATCCCAGCAC
AACGTGGTTCTGTGATACCATTTACAACTTGGATGGGTTTAGGCAAATCTATAAAGCAACTTTATGGCCAACCTTTGCATTACATGACTAACATTCTACTCAAACAATGG
GATCAATTACGGTTAGGAAGTGCGGATGAATATAAGCCATTGGATACTGTAATTCATCCGAGTAAAGCTGAAGCAACTGTATGGCTGGTTGAAGAGATTCATAGGCGCAC
CTCATCACATCATCATGTTGCTAAACTCTGGTTATCAGACCCGATGCACGAAGCGTACGTTGACTCCATTTTCCCCCAACTATGAAGGCTGCTTTCAGTTTTGTTCTGCT
CTGTGTTGATATTATAACATTTTCTAGAAGGCTAACATGTCAGTGACAATGTGAATTGTAATAGAAACAGCATTCTTCTTTTGTCACACTGCACTTCACTATGAAGAAGC
TCGAGCATTGCTTCTTCTGTCCATTGTTGCCATCTGTCTGTTCACTAGTTGACTGCATTTACTTTTGTAGCAAAGAACGAATGTAAATCAATATTGAAGATGCATATTTA
TCTTA
Protein sequenceShow/hide protein sequence
MKRPMPWNEQVDVISSGESSSSDSEAAVQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYMTNILLKQW
DQLRLGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL