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IVF0016429 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0016429
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr12:4756313..4756789
RNA-Seq ExpressionIVF0016429
SyntenyIVF0016429
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033551.1 retrotransposon protein [Cucumis melo var. makuwa]3.78e-3759.23Show/hide
Query:  VPAEDGLEMELMAMYSLRMNMSSNDMMASRFGQSNYARSSSNGQKRKRDMQPFETYDLNRDAMDAANDQIRIIAKWPDRAIHREDAMVREVITHIEFIPG
        VP +D ++ME  AM S RMNMS  +MM  R G+SN  R  SNGQKRK  MQ FETYDL  + M+AA DQ+R IA+WP++ +  EDAM  +VI  IE IP 
Subjt:  VPAEDGLEMELMAMYSLRMNMSSNDMMASRFGQSNYARSSSNGQKRKRDMQPFETYDLNRDAMDAANDQIRIIAKWPDRAIHREDAMVREVITHIEFIPG

Query:  LSMEDISKCVMIVTEKVLLMRSFIKMPDSM
        L+M + SKCVM+V +KV LMRSFIKMPDSM
Subjt:  LSMEDISKCVMIVTEKVLLMRSFIKMPDSM

KAA0048148.1 retrotransposon protein [Cucumis melo var. makuwa]3.77e-4354.43Show/hide
Query:  MFGKDYTIKAHAEMFRDIGCNMLGPNDGVPAEDGLEMELMAMYSLRMNMSSNDMMASRFGQSNYARSSSNGQKRKRDMQPFETYDLNRDAMDAANDQIRI
        +F KD    AHAE F DI  NM    D VP +DG++ME   M S RMNMS  DMM  R G+S+  R+ S+ QKRK  MQ FETYDL R+ M+AA DQ+R 
Subjt:  MFGKDYTIKAHAEMFRDIGCNMLGPNDGVPAEDGLEMELMAMYSLRMNMSSNDMMASRFGQSNYARSSSNGQKRKRDMQPFETYDLNRDAMDAANDQIRI

Query:  IAKWPDRAIHREDAMVREVITHIEFIPGLSMEDISKCVMIVTEKVLLMRSFIKMPDSM
        IA+WP +A+  ED M  +VI  I+ I  L+M + SKCVM+V +KV LMRSFIKMPD M
Subjt:  IAKWPDRAIHREDAMVREVITHIEFIPGLSMEDISKCVMIVTEKVLLMRSFIKMPDSM

KAA0051928.1 retrotransposon protein [Cucumis melo var. makuwa]2.90e-87100Show/hide
Query:  MLGPNDGVPAEDGLEMELMAMYSLRMNMSSNDMMASRFGQSNYARSSSNGQKRKRDMQPFETYDLNRDAMDAANDQIRIIAKWPDRAIHREDAMVREVIT
        MLGPNDGVPAEDGLEMELMAMYSLRMNMSSNDMMASRFGQSNYARSSSNGQKRKRDMQPFETYDLNRDAMDAANDQIRIIAKWPDRAIHREDAMVREVIT
Subjt:  MLGPNDGVPAEDGLEMELMAMYSLRMNMSSNDMMASRFGQSNYARSSSNGQKRKRDMQPFETYDLNRDAMDAANDQIRIIAKWPDRAIHREDAMVREVIT

Query:  HIEFIPGLSMEDISKCVMIVTEKVLLMRSFIKMPDSM
        HIEFIPGLSMEDISKCVMIVTEKVLLMRSFIKMPDSM
Subjt:  HIEFIPGLSMEDISKCVMIVTEKVLLMRSFIKMPDSM

KAA0064184.1 retrotransposon protein [Cucumis melo var. makuwa]1.33e-3955.06Show/hide
Query:  MFGKDYTIKAHAEMFRDIGCNMLGPNDGVPAEDGLEMELMAMYSLRMNMSSNDMMASRFGQSNYARSSSNGQKRKRDMQPFETYDLNRDAMDAANDQIRI
        +FGKD    A AE F DI  N+   ND VPAEDG+ ME  AM   RMNMS  DMM+ R  QS+ AR  S+ QKRKR MQ  ETYDL R  M+ A DQ+R 
Subjt:  MFGKDYTIKAHAEMFRDIGCNMLGPNDGVPAEDGLEMELMAMYSLRMNMSSNDMMASRFGQSNYARSSSNGQKRKRDMQPFETYDLNRDAMDAANDQIRI

Query:  IAKWPDRAIHREDAMVREVITHIEFIPGLSMEDISKCVMIVTEKVLLMRSFIKMPDSM
        I +WP++A+ RED M  +VI   E IP L++ + SKC+MIV +KV L RSFIKM DSM
Subjt:  IAKWPDRAIHREDAMVREVITHIEFIPGLSMEDISKCVMIVTEKVLLMRSFIKMPDSM

TYK02844.1 retrotransposon protein [Cucumis melo var. makuwa]7.39e-4155.06Show/hide
Query:  MFGKDYTIKAHAEMFRDIGCNMLGPNDGVPAEDGLEMELMAMYSLRMNMSSNDMMASRFGQSNYARSSSNGQKRKRDMQPFETYDLNRDAMDAANDQIRI
        +FGKD    A AE F DI  N+   ND VPAEDG+ ME  AM   RMNMS  DMM+ R  QS+ AR  S+ QKRKR MQ  ETYDL R  M+ A DQ+R 
Subjt:  MFGKDYTIKAHAEMFRDIGCNMLGPNDGVPAEDGLEMELMAMYSLRMNMSSNDMMASRFGQSNYARSSSNGQKRKRDMQPFETYDLNRDAMDAANDQIRI

Query:  IAKWPDRAIHREDAMVREVITHIEFIPGLSMEDISKCVMIVTEKVLLMRSFIKMPDSM
        I +WP++A+ RED M  +VI   E IP L++ + SKC+MIV +KV L RSFIKM DSM
Subjt:  IAKWPDRAIHREDAMVREVITHIEFIPGLSMEDISKCVMIVTEKVLLMRSFIKMPDSM

TrEMBL top hitse value%identityAlignment
A0A5A7TYU4 Retrotransposon protein6.9e-3654.43Show/hide
Query:  MFGKDYTIKAHAEMFRDIGCNMLGPNDGVPAEDGLEMELMAMYSLRMNMSSNDMMASRFGQSNYARSSSNGQKRKRDMQPFETYDLNRDAMDAANDQIRI
        +F KD    AHAE F DI  NM    D VP +DG++ME   M S RMNMS  DMM  R G+S+  R+ S+ QKRK  MQ FETYDL R+ M+AA DQ+R 
Subjt:  MFGKDYTIKAHAEMFRDIGCNMLGPNDGVPAEDGLEMELMAMYSLRMNMSSNDMMASRFGQSNYARSSSNGQKRKRDMQPFETYDLNRDAMDAANDQIRI

Query:  IAKWPDRAIHREDAMVREVITHIEFIPGLSMEDISKCVMIVTEKVLLMRSFIKMPDSM
        IA+WP +A+  ED M  +VI  I+ I  L+M + SKCVM+V +KV LMRSFIKMPD M
Subjt:  IAKWPDRAIHREDAMVREVITHIEFIPGLSMEDISKCVMIVTEKVLLMRSFIKMPDSM

A0A5A7VAC3 Retrotransposon protein2.2e-3455.06Show/hide
Query:  MFGKDYTIKAHAEMFRDIGCNMLGPNDGVPAEDGLEMELMAMYSLRMNMSSNDMMASRFGQSNYARSSSNGQKRKRDMQPFETYDLNRDAMDAANDQIRI
        +FGKD    A AE F DI  N+   ND VPAEDG+ ME  AM   RMNMS  DMM+ R  QS+ AR  S+ QKRKR MQ  ETYDL R  M+ A DQ+R 
Subjt:  MFGKDYTIKAHAEMFRDIGCNMLGPNDGVPAEDGLEMELMAMYSLRMNMSSNDMMASRFGQSNYARSSSNGQKRKRDMQPFETYDLNRDAMDAANDQIRI

Query:  IAKWPDRAIHREDAMVREVITHIEFIPGLSMEDISKCVMIVTEKVLLMRSFIKMPDSM
        I +WP++A+ RED M  +VI   E IP L++ + SKC+MIV +KV L RSFIKM DSM
Subjt:  IAKWPDRAIHREDAMVREVITHIEFIPGLSMEDISKCVMIVTEKVLLMRSFIKMPDSM

A0A5D3B9T0 Retrotransposon protein6.7e-3159.23Show/hide
Query:  VPAEDGLEMELMAMYSLRMNMSSNDMMASRFGQSNYARSSSNGQKRKRDMQPFETYDLNRDAMDAANDQIRIIAKWPDRAIHREDAMVREVITHIEFIPG
        VP +D ++ME  AM S RMNMS  +MM  R G+SN  R  SNGQKRK  MQ FETYDL  + M+AA DQ+R IA+WP++ +  EDAM  +VI  IE IP 
Subjt:  VPAEDGLEMELMAMYSLRMNMSSNDMMASRFGQSNYARSSSNGQKRKRDMQPFETYDLNRDAMDAANDQIRIIAKWPDRAIHREDAMVREVITHIEFIPG

Query:  LSMEDISKCVMIVTEKVLLMRSFIKMPDSM
        L+M + SKCVM+V +KV LMRSFIKMPDSM
Subjt:  LSMEDISKCVMIVTEKVLLMRSFIKMPDSM

A0A5D3BUJ4 Retrotransposon protein2.2e-3455.06Show/hide
Query:  MFGKDYTIKAHAEMFRDIGCNMLGPNDGVPAEDGLEMELMAMYSLRMNMSSNDMMASRFGQSNYARSSSNGQKRKRDMQPFETYDLNRDAMDAANDQIRI
        +FGKD    A AE F DI  N+   ND VPAEDG+ ME  AM   RMNMS  DMM+ R  QS+ AR  S+ QKRKR MQ  ETYDL R  M+ A DQ+R 
Subjt:  MFGKDYTIKAHAEMFRDIGCNMLGPNDGVPAEDGLEMELMAMYSLRMNMSSNDMMASRFGQSNYARSSSNGQKRKRDMQPFETYDLNRDAMDAANDQIRI

Query:  IAKWPDRAIHREDAMVREVITHIEFIPGLSMEDISKCVMIVTEKVLLMRSFIKMPDSM
        I +WP++A+ RED M  +VI   E IP L++ + SKC+MIV +KV L RSFIKM DSM
Subjt:  IAKWPDRAIHREDAMVREVITHIEFIPGLSMEDISKCVMIVTEKVLLMRSFIKMPDSM

A0A5D3CM76 Retrotransposon protein1.8e-68100Show/hide
Query:  MLGPNDGVPAEDGLEMELMAMYSLRMNMSSNDMMASRFGQSNYARSSSNGQKRKRDMQPFETYDLNRDAMDAANDQIRIIAKWPDRAIHREDAMVREVIT
        MLGPNDGVPAEDGLEMELMAMYSLRMNMSSNDMMASRFGQSNYARSSSNGQKRKRDMQPFETYDLNRDAMDAANDQIRIIAKWPDRAIHREDAMVREVIT
Subjt:  MLGPNDGVPAEDGLEMELMAMYSLRMNMSSNDMMASRFGQSNYARSSSNGQKRKRDMQPFETYDLNRDAMDAANDQIRIIAKWPDRAIHREDAMVREVIT

Query:  HIEFIPGLSMEDISKCVMIVTEKVLLMRSFIKMPDSM
        HIEFIPGLSMEDISKCVMIVTEKVLLMRSFIKMPDSM
Subjt:  HIEFIPGLSMEDISKCVMIVTEKVLLMRSFIKMPDSM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTGGAAAAGACTACACGATAAAGGCCCATGCGGAGATGTTTAGAGACATCGGGTGCAACATGTTAGGACCCAACGACGGTGTCCCCGCAGAGGATGGCTTAGAGAT
GGAGTTAATGGCTATGTACAGTCTGAGGATGAACATGTCATCAAACGACATGATGGCCAGTCGTTTTGGTCAGTCCAACTATGCTAGGTCGAGCTCTAATGGTCAGAAAA
GGAAGCGCGACATGCAGCCGTTTGAGACTTATGATCTTAATCGGGATGCCATGGACGCTGCAAATGATCAGATTAGAATCATTGCTAAATGGCCTGATAGAGCTATCCAT
CGAGAGGATGCGATGGTGCGGGAAGTCATTACGCATATAGAGTTTATTCCGGGCCTTAGTATGGAGGACATCAGTAAATGCGTGATGATAGTGACAGAGAAGGTATTGCT
AATGAGAAGCTTCATCAAGATGCCCGATTCGATGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTTGGAAAAGACTACACGATAAAGGCCCATGCGGAGATGTTTAGAGACATCGGGTGCAACATGTTAGGACCCAACGACGGTGTCCCCGCAGAGGATGGCTTAGAGAT
GGAGTTAATGGCTATGTACAGTCTGAGGATGAACATGTCATCAAACGACATGATGGCCAGTCGTTTTGGTCAGTCCAACTATGCTAGGTCGAGCTCTAATGGTCAGAAAA
GGAAGCGCGACATGCAGCCGTTTGAGACTTATGATCTTAATCGGGATGCCATGGACGCTGCAAATGATCAGATTAGAATCATTGCTAAATGGCCTGATAGAGCTATCCAT
CGAGAGGATGCGATGGTGCGGGAAGTCATTACGCATATAGAGTTTATTCCGGGCCTTAGTATGGAGGACATCAGTAAATGCGTGATGATAGTGACAGAGAAGGTATTGCT
AATGAGAAGCTTCATCAAGATGCCCGATTCGATGTAG
Protein sequenceShow/hide protein sequence
MFGKDYTIKAHAEMFRDIGCNMLGPNDGVPAEDGLEMELMAMYSLRMNMSSNDMMASRFGQSNYARSSSNGQKRKRDMQPFETYDLNRDAMDAANDQIRIIAKWPDRAIH
REDAMVREVITHIEFIPGLSMEDISKCVMIVTEKVLLMRSFIKMPDSM